CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29870 | C29870G | noncoding | C | G | 348 | 348 | 1 | 29870-29870 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29870 | C29870G | C | G | 348 | 348 | All | 0.000067 |
noncoding | 29870 | C29870G | C | G | 108 | 108 | B.1.1.7 | 0.000097 |
noncoding | 29870 | C29870G | C | G | 22 | 22 | B.1.619.1 | 0.014112 |
noncoding | 29870 | C29870G | C | G | 20 | 20 | B.1.497 | 0.006295 |
noncoding | 29870 | C29870G | C | G | 16 | 16 | B.1 | 0.000147 |
noncoding | 29870 | C29870G | C | G | 13 | 13 | AY.69 | 0.002427 |
noncoding | 29870 | C29870G | C | G | 13 | 13 | B.1.617.2 | 0.000049 |
noncoding | 29870 | C29870G | C | G | 12 | 12 | AY.30 | 0.004749 |
noncoding | 29870 | C29870G | C | G | 12 | 12 | AY.43 | 0.000053 |
noncoding | 29870 | C29870G | C | G | 11 | 11 | AY.4 | 0.000017 |
noncoding | 29870 | C29870G | C | G | 8 | 8 | B.1.1 | 0.000145 |
noncoding | 29870 | C29870G | C | G | 7 | 7 | B.1.351 | 0.000208 |
noncoding | 29870 | C29870G | C | G | 6 | 6 | AY.102 | 0.000159 |
noncoding | 29870 | C29870G | C | G | 4 | 4 | AY.39 | 0.000099 |
noncoding | 29870 | C29870G | C | G | 4 | 4 | B.1.177 | 0.000053 |
noncoding | 29870 | C29870G | C | G | 3 | 3 | B.1.1.317 | 0.001235 |
noncoding | 29870 | C29870G | C | G | 3 | 3 | B.1.177.83 | 0.004444 |
noncoding | 29870 | C29870G | C | G | 3 | 3 | B.1.234 | 0.000396 |
noncoding | 29870 | C29870G | C | G | 3 | 3 | B.1.36 | 0.000438 |
noncoding | 29870 | C29870G | C | G | 3 | 3 | B.1.427 | 0.000151 |
noncoding | 29870 | C29870G | C | G | 3 | 3 | B.1.524 | 0.004219 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | 0.111111 | |
noncoding | 29870 | C29870G | C | G | 2 | 2 | AY.26 | 0.000057 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | AY.4.5 | 0.000215 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | AY.46 | 0.000208 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | AY.59 | 0.001059 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | B.1.1.207 | 0.002364 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | B.1.177.76 | 0.004988 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | B.1.509 | 0.001732 |
noncoding | 29870 | C29870G | C | G | 2 | 2 | B.6 | 0.00182 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | A | 0.000387 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | A.2.2 | 0.001689 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | A.2.5 | 0.000499 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.103 | 0.000006 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.118 | 0.000063 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.24 | 0.000431 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.25 | 0.000006 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.57 | 0.000656 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.65 | 0.000533 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.79 | 0.001211 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | AY.92 | 0.000287 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.1 | 0.000327 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.113 | 0.006993 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.220 | 0.001859 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.253 | 0.002506 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.44 | 0.00241 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.519 | 0.00004 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.1.89 | 0.006061 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.157 | 0.002985 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.177.17 | 0.000821 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.177.58 | 0.001332 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.201 | 0.005682 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.214.3 | 0.007143 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.258 | 0.000067 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.340 | 0.004292 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.351.3 | 0.000876 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.36.16 | 0.001425 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.36.18 | 0.00042 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.439 | 0.005917 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.609 | 0.000479 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29870 | C29870G | C | G | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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