CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29838 | C29838T | noncoding | C | T | 2253 | 2253 | 1 | 29838-29838 | |
noncoding | 29838 | C29838- | noncoding | C | - | 1177 | 1177 | 1 | 29838-29838 | |
noncoding | 29838 | C29838A | noncoding | C | A | 365 | 365 | 1 | 29838-29838 | |
noncoding | 29838 | C29838G | noncoding | C | G | 91 | 91 | 1 | 29838-29838 | |
noncoding | 29838 | C29838W | noncoding | C | W | 46 | 46 | 1 | 29838-29838 | |
noncoding | 29838 | C29838H | noncoding | C | H | 13 | 13 | 1 | 29838-29838 | |
noncoding | 29838 | C29838D | noncoding | C | D | 4 | 4 | 1 | 29838-29838 | |
noncoding | 29838 | C29838V | noncoding | C | V | 1 | 1 | 1 | 29838-29838 | |
noncoding | 29838 | C29838K | noncoding | C | K | 1 | 1 | 1 | 29838-29838 | |
noncoding | 29838 | C29838R | noncoding | C | R | 1 | 1 | 1 | 29838-29838 | |
noncoding | 29838 | C29838B | noncoding | C | B | 1 | 1 | 1 | 29838-29838 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29838 | C29838T | C | T | 2253 | 2253 | All | 0.000431 |
noncoding | 29838 | C29838- | C | - | 1177 | 1177 | All | 0.000225 |
noncoding | 29838 | C29838- | C | - | 747 | 747 | B.1.1.7 | 0.000669 |
noncoding | 29838 | C29838T | C | T | 635 | 635 | B.1.1.333 | 0.683531 |
noncoding | 29838 | C29838A | C | A | 365 | 365 | All | 0.00007 |
noncoding | 29838 | C29838T | C | T | 253 | 253 | B.1.1.7 | 0.000226 |
noncoding | 29838 | C29838T | C | T | 168 | 168 | B.1.177 | 0.002212 |
noncoding | 29838 | C29838T | C | T | 123 | 123 | AY.103 | 0.000764 |
noncoding | 29838 | C29838G | C | G | 91 | 91 | All | 0.000017 |
noncoding | 29838 | C29838T | C | T | 89 | 89 | B.1 | 0.000815 |
noncoding | 29838 | C29838T | C | T | 86 | 86 | B.1.617.2 | 0.000324 |
noncoding | 29838 | C29838A | C | A | 82 | 82 | B.1.1.7 | 0.000073 |
noncoding | 29838 | C29838T | C | T | 78 | 78 | B.1.2 | 0.000687 |
noncoding | 29838 | C29838T | C | T | 70 | 70 | P.1 | 0.001103 |
noncoding | 29838 | C29838T | C | T | 69 | 69 | AY.4 | 0.000107 |
noncoding | 29838 | C29838T | C | T | 64 | 64 | AY.44 | 0.00039 |
noncoding | 29838 | C29838T | C | T | 54 | 54 | AY.58 | 0.049002 |
noncoding | 29838 | C29838A | C | A | 52 | 52 | B.1 | 0.000476 |
noncoding | 29838 | C29838W | C | W | 46 | 46 | All | 0.000009 |
noncoding | 29838 | C29838T | C | T | 44 | 44 | AY.43 | 0.000195 |
noncoding | 29838 | C29838T | C | T | 40 | 40 | AY.25 | 0.000241 |
noncoding | 29838 | C29838G | C | G | 40 | 40 | B.1.1.7 | 0.000036 |
noncoding | 29838 | C29838W | C | W | 39 | 39 | B.1.1.7 | 0.000035 |
noncoding | 29838 | C29838- | C | - | 34 | 34 | AZ.2 | 0.027915 |
noncoding | 29838 | C29838- | C | - | 30 | 30 | B.1.2 | 0.000264 |
noncoding | 29838 | C29838T | C | T | 23 | 23 | B.1.1 | 0.000417 |
noncoding | 29838 | C29838- | C | - | 23 | 23 | B.1.177 | 0.000303 |
noncoding | 29838 | C29838A | C | A | 22 | 22 | AY.4 | 0.000034 |
noncoding | 29838 | C29838- | C | - | 22 | 22 | B.1 | 0.000202 |
noncoding | 29838 | C29838- | C | - | 21 | 21 | B.1.617.2 | 0.000079 |
noncoding | 29838 | C29838- | C | - | 20 | 20 | B.1.1 | 0.000363 |
noncoding | 29838 | C29838T | C | T | 19 | 19 | B.1.36 | 0.002772 |
noncoding | 29838 | C29838A | C | A | 15 | 15 | AY.25 | 0.00009 |
noncoding | 29838 | C29838- | C | - | 14 | 14 | AY.9 | 0.000946 |
noncoding | 29838 | C29838- | C | - | 14 | 14 | P.1 | 0.000221 |
noncoding | 29838 | C29838H | C | H | 13 | 13 | All | 0.000002 |
noncoding | 29838 | C29838A | C | A | 13 | 13 | B.1.1 | 0.000236 |
noncoding | 29838 | C29838T | C | T | 13 | 13 | B.1.36.29 | 0.006725 |
noncoding | 29838 | C29838T | C | T | 13 | 13 | B.1.526 | 0.000306 |
noncoding | 29838 | C29838A | C | A | 13 | 13 | B.1.617.1 | 0.001677 |
noncoding | 29838 | C29838T | C | T | 12 | 12 | AY.47 | 0.000373 |
noncoding | 29838 | C29838- | C | - | 12 | 12 | B.1.221 | 0.000852 |
noncoding | 29838 | C29838A | C | A | 12 | 12 | B.1.36 | 0.001751 |
noncoding | 29838 | C29838T | C | T | 11 | 11 | AY.105 | 0.007074 |
noncoding | 29838 | C29838T | C | T | 11 | 11 | AY.3 | 0.000109 |
noncoding | 29838 | C29838T | C | T | 11 | 11 | AY.39 | 0.000272 |
noncoding | 29838 | C29838- | C | - | 11 | 11 | AY.43 | 0.000049 |
noncoding | 29838 | C29838T | C | T | 11 | 11 | AY.5 | 0.000227 |
noncoding | 29838 | C29838A | C | A | 11 | 11 | B.1.617.2 | 0.000041 |
noncoding | 29838 | C29838- | C | - | 10 | 10 | AY.4 | 0.000016 |
noncoding | 29838 | C29838G | C | G | 10 | 10 | B.1 | 0.000092 |
noncoding | 29838 | C29838- | C | - | 10 | 10 | B.1.1.519 | 0.000397 |
noncoding | 29838 | C29838- | C | - | 9 | 9 | AD.2 | 0.001971 |
noncoding | 29838 | C29838T | C | T | 9 | 9 | AY.102 | 0.000239 |
noncoding | 29838 | C29838T | C | T | 9 | 9 | AY.64 | 0.005357 |
noncoding | 29838 | C29838T | C | T | 9 | 9 | B.1.1.519 | 0.000357 |
noncoding | 29838 | C29838T | C | T | 9 | 9 | B.1.160 | 0.000281 |
noncoding | 29838 | C29838- | C | - | 9 | 9 | B.1.258 | 0.000599 |
noncoding | 29838 | C29838T | C | T | 9 | 9 | B.1.351 | 0.000268 |
noncoding | 29838 | C29838T | C | T | 9 | 9 | B.1.429 | 0.000212 |
noncoding | 29838 | C29838T | C | T | 8 | 8 | AY.75 | 0.000448 |
noncoding | 29838 | C29838T | C | T | 8 | 8 | B.1.617.1 | 0.001032 |
noncoding | 29838 | C29838T | C | T | 8 | 8 | B.1.637 | 0.000585 |
noncoding | 29838 | C29838T | C | T | 7 | 7 | AY.100 | 0.000322 |
noncoding | 29838 | C29838A | C | A | 7 | 7 | AY.43 | 0.000031 |
noncoding | 29838 | C29838T | C | T | 7 | 7 | B.1.1.28 | 0.002179 |
noncoding | 29838 | C29838A | C | A | 7 | 7 | D.2 | 0.000525 |
noncoding | 29838 | C29838T | C | T | 6 | 6 | AY.118 | 0.000376 |
noncoding | 29838 | C29838T | C | T | 6 | 6 | AY.20 | 0.000233 |
noncoding | 29838 | C29838- | C | - | 6 | 6 | AY.44 | 0.000037 |
noncoding | 29838 | C29838T | C | T | 6 | 6 | AY.9 | 0.000406 |
noncoding | 29838 | C29838T | C | T | 6 | 6 | B.1.110 | 0.027149 |
noncoding | 29838 | C29838A | C | A | 6 | 6 | B.1.2 | 0.000053 |
noncoding | 29838 | C29838T | C | T | 6 | 6 | B.1.3 | 0.015707 |
noncoding | 29838 | C29838- | C | - | 6 | 6 | B.1.577 | 0.004124 |
noncoding | 29838 | C29838- | C | - | 5 | 5 | AY.102 | 0.000133 |
noncoding | 29838 | C29838- | C | - | 5 | 5 | AY.103 | 0.000031 |
noncoding | 29838 | C29838T | C | T | 5 | 5 | AY.54 | 0.000477 |
noncoding | 29838 | C29838T | C | T | 5 | 5 | B.1.1.121 | 0.012136 |
noncoding | 29838 | C29838- | C | - | 5 | 5 | B.1.1.218 | 0.038462 |
noncoding | 29838 | C29838A | C | A | 5 | 5 | B.1.1.28 | 0.001556 |
noncoding | 29838 | C29838H | C | H | 5 | 5 | B.1.1.7 | 0.000004 |
noncoding | 29838 | C29838T | C | T | 5 | 5 | B.1.243 | 0.000348 |
noncoding | 29838 | C29838T | C | T | 5 | 5 | B.1.258 | 0.000333 |
noncoding | 29838 | C29838A | C | A | 5 | 5 | B.1.36.29 | 0.002587 |
noncoding | 29838 | C29838- | C | - | 5 | 5 | B.1.429 | 0.000118 |
noncoding | 29838 | C29838T | C | T | 5 | 5 | B.1.469 | 0.018051 |
noncoding | 29838 | C29838T | C | T | 5 | 5 | B.1.551 | 0.006452 |
noncoding | 29838 | C29838T | C | T | 5 | 5 | B.1.560 | 0.023148 |
noncoding | 29838 | C29838G | C | G | 5 | 5 | B.1.617.1 | 0.000645 |
noncoding | 29838 | C29838- | C | - | 5 | 5 | C.1 | 0.011962 |
noncoding | 29838 | C29838D | C | D | 4 | 4 | All | 0.000001 |
noncoding | 29838 | C29838A | C | A | 4 | 4 | AY.102 | 0.000106 |
noncoding | 29838 | C29838T | C | T | 4 | 4 | AY.120 | 0.000149 |
noncoding | 29838 | C29838- | C | - | 4 | 4 | AY.25 | 0.000024 |
noncoding | 29838 | C29838G | C | G | 4 | 4 | AY.43 | 0.000018 |
noncoding | 29838 | C29838- | C | - | 4 | 4 | AY.99.2 | 0.000369 |
noncoding | 29838 | C29838T | C | T | 4 | 4 | B.1.1.37 | 0.000771 |
noncoding | 29838 | C29838- | C | - | 4 | 4 | B.1.160 | 0.000125 |
noncoding | 29838 | C29838T | C | T | 4 | 4 | B.1.177.53 | 0.009569 |
noncoding | 29838 | C29838- | C | - | 4 | 4 | B.1.234 | 0.000528 |
noncoding | 29838 | C29838- | C | - | 4 | 4 | B.1.351 | 0.000119 |
noncoding | 29838 | C29838G | C | G | 4 | 4 | B.1.36 | 0.000584 |
noncoding | 29838 | C29838A | C | A | 4 | 4 | B.1.36.17 | 0.001976 |
noncoding | 29838 | C29838T | C | T | 4 | 4 | B.1.427 | 0.000202 |
noncoding | 29838 | C29838- | C | - | 4 | 4 | B.1.574 | 0.008602 |
noncoding | 29838 | C29838T | C | T | 4 | 4 | C.35 | 0.003096 |
noncoding | 29838 | C29838T | C | T | 4 | 4 | P.1.17 | 0.000647 |
noncoding | 29838 | C29838- | C | - | 4 | 4 | Q.1 | 0.000505 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | AY.117 | 0.000254 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | AY.119 | 0.000106 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | AY.23 | 0.000209 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | AY.26 | 0.000085 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | AY.3 | 0.00003 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | AY.33 | 0.0002 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | AY.36 | 0.000445 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | AY.39 | 0.000074 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | AY.44 | 0.000018 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | AY.7.2 | 0.001678 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | AY.71 | 0.001425 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | AY.75.1 | 0.000541 |
noncoding | 29838 | C29838G | C | G | 3 | 3 | B.1.1.216 | 0.002671 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | B.1.1.216 | 0.002671 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | B.1.1.216 | 0.002671 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | B.1.1.351 | 0.00838 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | B.1.1.448 | 0.006098 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | B.1.214 | 0.010989 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | B.1.258.17 | 0.000312 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | B.1.293 | 0.0375 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | B.1.351 | 0.000089 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | B.1.36.17 | 0.001482 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | B.1.560 | 0.013889 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | B.1.596 | 0.000261 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | B.1.617.1 | 0.000387 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | B.1.619 | 0.002613 |
noncoding | 29838 | C29838- | C | - | 3 | 3 | B.6.6 | 0.002667 |
noncoding | 29838 | C29838T | C | T | 3 | 3 | D.2 | 0.000225 |
noncoding | 29838 | C29838A | C | A | 3 | 3 | P.2 | 0.00056 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | 0.111111 | |
noncoding | 29838 | C29838- | C | - | 2 | 2 | A | 0.000774 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | A.1 | 0.000564 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | AY.103 | 0.000012 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.108 | 0.002205 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | AY.3 | 0.00002 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | AY.33 | 0.000134 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.42 | 0.00008 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | AY.42 | 0.00008 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | AY.46 | 0.000208 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.59 | 0.001059 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.61 | 0.00021 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | AY.69 | 0.000373 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.73 | 0.001331 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.81 | 0.003984 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | AY.98 | 0.000158 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B | 0.000256 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B | 0.000256 |
noncoding | 29838 | C29838H | C | H | 2 | 2 | B.1 | 0.000018 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.1 | 0.000653 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.166 | 0.066667 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.222 | 0.000408 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.222 | 0.000408 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.234 | 0.024096 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.241 | 0.004141 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.25 | 0.001137 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.265 | 0.006309 |
noncoding | 29838 | C29838G | C | G | 2 | 2 | B.1.1.27 | 0.011299 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.277 | 0.001517 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.305 | 0.007722 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.317 | 0.000823 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.318 | 0.000604 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.1.326 | 0.003521 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.354 | 0.008772 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.39 | 0.001019 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.1.416 | 0.00181 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.1.46 | 0.008734 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.1.519 | 0.000079 |
noncoding | 29838 | C29838D | C | D | 2 | 2 | B.1.1.7 | 0.000002 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.177.51 | 0.009132 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.177.75 | 0.002081 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.177.83 | 0.002963 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.177.86 | 0.000367 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.214 | 0.007326 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.234 | 0.000264 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29838 | C29838W | C | W | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.311 | 0.000549 |
noncoding | 29838 | C29838W | C | W | 2 | 2 | B.1.351 | 0.000059 |
noncoding | 29838 | C29838H | C | H | 2 | 2 | B.1.351 | 0.000059 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.36 | 0.000292 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.36.22 | 0.002415 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.36.22 | 0.002415 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.426 | 0.002018 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.427 | 0.000101 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.470 | 0.002809 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.526 | 0.000047 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.538 | 0.016129 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.575 | 0.000607 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.595 | 0.000522 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 29838 | C29838A | C | A | 2 | 2 | B.40 | 0.000729 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | B.6.6 | 0.001778 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | C.35 | 0.001548 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | C.36 | 0.001821 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | P.2 | 0.000373 |
noncoding | 29838 | C29838- | C | - | 2 | 2 | P.2 | 0.000373 |
noncoding | 29838 | C29838T | C | T | 2 | 2 | Q.3 | 0.00029 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | A.1 | 0.000282 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | A.23.1 | 0.000704 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | A.29 | 0.005319 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29838 | C29838V | C | V | 1 | 1 | All | 0 |
noncoding | 29838 | C29838K | C | K | 1 | 1 | All | 0 |
noncoding | 29838 | C29838B | C | B | 1 | 1 | All | 0 |
noncoding | 29838 | C29838R | C | R | 1 | 1 | All | 0 |
noncoding | 29838 | C29838V | C | V | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.101 | 0.00049 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.103 | 0.000006 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.116.1 | 0.000311 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.121 | 0.000135 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.25 | 0.000006 |
noncoding | 29838 | C29838H | C | H | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.29 | 0.000016 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.35 | 0.000233 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.4 | 0.000002 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.41 | 0.000294 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.54 | 0.000095 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.6 | 0.000041 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.64 | 0.000595 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.67 | 0.000464 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.70 | 0.000209 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.70 | 0.000209 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.74 | 0.000116 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.76 | 0.004831 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.84 | 0.000437 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.86 | 0.00083 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.97 | 0.001701 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B | 0.000128 |
noncoding | 29838 | C29838D | C | D | 1 | 1 | B.1 | 0.000009 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29838 | C29838H | C | H | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.113 | 0.006993 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.137 | 0.0125 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.1.186 | 0.003436 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.192 | 0.002309 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.198 | 0.001468 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.1.220 | 0.001859 |
noncoding | 29838 | C29838H | C | H | 1 | 1 | B.1.1.220 | 0.001859 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.231 | 0.003096 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.236 | 0.006897 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.254 | 0.011236 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.27 | 0.00565 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.282 | 0.011628 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.1.284 | 0.000107 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.1.297 | 0.002237 |
noncoding | 29838 | C29838B | C | B | 1 | 1 | B.1.1.317 | 0.000412 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.1.329 | 0.003846 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.1.374 | 0.002375 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.413 | 0.006897 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.515 | 0.02 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.1.519 | 0.00004 |
noncoding | 29838 | C29838K | C | K | 1 | 1 | B.1.1.519 | 0.00004 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.523 | 0.001563 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.54 | 0.003021 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.1.63 | 0.000386 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.1.99 | 0.02381 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.160.16 | 0.000929 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.177 | 0.000013 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.177.23 | 0.003236 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.4 | 0.000211 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.41 | 0.0025 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.43 | 0.001477 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.60 | 0.000218 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.206 | 0.000816 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29838 | C29838H | C | H | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.221.2 | 0.004016 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.241 | 0.000812 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.260 | 0.003344 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.265 | 0.001271 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.320 | 0.001245 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.340 | 0.004292 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29838 | C29838R | C | R | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29838 | C29838D | C | D | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.351.5 | 0.0006 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.36.10 | 0.004785 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.36.17 | 0.000494 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.36.29 | 0.000517 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.361 | 0.001289 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.400 | 0.000429 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.404 | 0.001302 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.466.2 | 0.000391 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.466.2 | 0.000391 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.468 | 0.005714 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.471 | 0.002732 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.505 | 0.004386 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.509 | 0.000866 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.544 | 0.006024 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.544 | 0.006024 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.546 | 0.003704 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.560 | 0.00463 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.564.1 | 0.001577 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.589 | 0.007576 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | B.1.617.2 | 0.000004 |
noncoding | 29838 | C29838W | C | W | 1 | 1 | B.1.617.2 | 0.000004 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.618 | 0.004032 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.618 | 0.004032 |
noncoding | 29838 | C29838W | C | W | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.627 | 0.00202 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | C.36 | 0.000911 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | C.37 | 0.000116 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | C.37 | 0.000116 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | C.38 | 0.008065 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | N.5 | 0.001767 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | N.6 | 0.007092 |
noncoding | 29838 | C29838W | C | W | 1 | 1 | P.1 | 0.000016 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | P.1 | 0.000016 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | P.1.13 | 0.000898 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | P.1.7 | 0.000319 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | P.1.7 | 0.000319 |
noncoding | 29838 | C29838A | C | A | 1 | 1 | Q.1 | 0.000126 |
noncoding | 29838 | C29838G | C | G | 1 | 1 | Q.1 | 0.000126 |
noncoding | 29838 | C29838- | C | - | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29838 | C29838T | C | T | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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