CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29835 & Codon = -

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29835C29835-noncodingC-10291029129835-29835

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29835C29835-C-10291029All0.000197
noncoding29835C29835-C-405405B.1.1.70.000363
noncoding29835C29835-C-4040B.1.617.20.000151
noncoding29835C29835-C-3838AY.250.000229
noncoding29835C29835-C-3838AY.470.001182
noncoding29835C29835-C-3838B.1.1.3170.015644
noncoding29835C29835-C-3434C.370.003946
noncoding29835C29835-C-3131AY.430.000137
noncoding29835C29835-C-2323B.1.10.000417
noncoding29835C29835-C-1818AY.1030.000112
noncoding29835C29835-C-1818AY.260.00051
noncoding29835C29835-C-1818AY.440.00011
noncoding29835C29835-C-1515B.1.20.000132
noncoding29835C29835-C-1515B.1.3690.004278
noncoding29835C29835-C-1313AY.50.000268
noncoding29835C29835-C-1313B.10.000119
noncoding29835C29835-C-1212AY.390.000297
noncoding29835C29835-C-1212AY.40.000019
noncoding29835C29835-C-1212B.1.1.5190.000477
noncoding29835C29835-C-1111AY.1020.000292
noncoding29835C29835-C-99P.10.000142
noncoding29835C29835-C-88B.1.1770.000105
noncoding29835C29835-C-77P.20.001306
noncoding29835C29835-C-66AY.30.00006
noncoding29835C29835-C-66AY.98.10.000291
noncoding29835C29835-C-66AY.99.20.000553
noncoding29835C29835-C-66B.1.2210.000426
noncoding29835C29835-C-55B.1.1600.000156
noncoding29835C29835-C-55B.1.5260.000118
noncoding29835C29835-C-55B.1.6370.000365
noncoding29835C29835-C-55C.10.011962
noncoding29835C29835-C-44AY.360.000593
noncoding29835C29835-C-44AY.840.00175
noncoding29835C29835-C-44AZ.20.003284
noncoding29835C29835-C-44B.1.2580.000266
noncoding29835C29835-C-33AY.200.000117
noncoding29835C29835-C-33AY.90.000203
noncoding29835C29835-C-33B.1.1.2180.023077
noncoding29835C29835-C-33B.1.1.3060.001315
noncoding29835C29835-C-33B.1.1.4480.006098
noncoding29835C29835-C-33B.1.3510.000089
noncoding29835C29835-C-33B.1.4290.000071
noncoding29835C29835-C-33B.6.60.002667
noncoding29835C29835-C-33C.36.30.001702
noncoding29835C29835-C-220.111111
noncoding29835C29835-C-22A0.000774
noncoding29835C29835-C-22AY.1000.000092
noncoding29835C29835-C-22AY.1070.000932
noncoding29835C29835-C-22AY.1170.000169
noncoding29835C29835-C-22AY.4.20.000043
noncoding29835C29835-C-22AY.4.40.000818
noncoding29835C29835-C-22AY.540.000191
noncoding29835C29835-C-22AY.610.00021
noncoding29835C29835-C-22AY.750.000112
noncoding29835C29835-C-22AY.75.10.000361
noncoding29835C29835-C-22AY.9.20.000073
noncoding29835C29835-C-22B0.000256
noncoding29835C29835-C-22B.1.1.1660.066667
noncoding29835C29835-C-22B.1.1.2220.000408
noncoding29835C29835-C-22B.1.1.280.000622
noncoding29835C29835-C-22B.1.1.3480.001592
noncoding29835C29835-C-22B.1.1.4130.013793
noncoding29835C29835-C-22B.1.1.460.008734
noncoding29835C29835-C-22B.1.177.860.000367
noncoding29835C29835-C-22B.1.2100.004264
noncoding29835C29835-C-22B.1.2430.000139
noncoding29835C29835-C-22B.1.36.290.001035
noncoding29835C29835-C-22B.1.4270.000101
noncoding29835C29835-C-22B.1.4970.00063
noncoding29835C29835-C-22B.1.5960.000174
noncoding29835C29835-C-22B.1.6210.000177
noncoding29835C29835-C-22C.360.001821
noncoding29835C29835-C-22P.1.10.000635
noncoding29835C29835-C-22P.1.140.000096
noncoding29835C29835-C-22P.1.150.000465
noncoding29835C29835-C-11A.20.000662
noncoding29835C29835-C-11AD.20.000219
noncoding29835C29835-C-11AY.10.000396
noncoding29835C29835-C-11AY.1060.000335
noncoding29835C29835-C-11AY.1190.000035
noncoding29835C29835-C-11AY.1210.000135
noncoding29835C29835-C-11AY.160.00038
noncoding29835C29835-C-11AY.3.10.000085
noncoding29835C29835-C-11AY.300.000396
noncoding29835C29835-C-11AY.330.000067
noncoding29835C29835-C-11AY.420.00004
noncoding29835C29835-C-11AY.46.60.000072
noncoding29835C29835-C-11AY.5.40.000277
noncoding29835C29835-C-11AY.60.000041
noncoding29835C29835-C-11AY.620.000436
noncoding29835C29835-C-11AY.7.20.000559
noncoding29835C29835-C-11AY.9.10.000084
noncoding29835C29835-C-11AY.940.000443
noncoding29835C29835-C-11AY.950.000761
noncoding29835C29835-C-11B.1.1.1350.004695
noncoding29835C29835-C-11B.1.1.1390.022727
noncoding29835C29835-C-11B.1.1.1970.037037
noncoding29835C29835-C-11B.1.1.1980.001468
noncoding29835C29835-C-11B.1.1.2360.006897
noncoding29835C29835-C-11B.1.1.2770.000759
noncoding29835C29835-C-11B.1.1.3180.000302
noncoding29835C29835-C-11B.1.1.330.000421
noncoding29835C29835-C-11B.1.1.3720.000689
noncoding29835C29835-C-11B.1.1.5150.02
noncoding29835C29835-C-11B.1.1.5170.006803
noncoding29835C29835-C-11B.1.1.540.003021
noncoding29835C29835-C-11B.1.1.990.02381
noncoding29835C29835-C-11B.1.177.180.00116
noncoding29835C29835-C-11B.1.177.330.001645
noncoding29835C29835-C-11B.1.177.70.000165
noncoding29835C29835-C-11B.1.177.750.001041
noncoding29835C29835-C-11B.1.1800.05
noncoding29835C29835-C-11B.1.2340.000132
noncoding29835C29835-C-11B.1.3490.000715
noncoding29835C29835-C-11B.1.351.20.000303
noncoding29835C29835-C-11B.1.4260.001009
noncoding29835C29835-C-11B.1.5250.000113
noncoding29835C29835-C-11B.1.6090.000479
noncoding29835C29835-C-11B.1.617.10.000129
noncoding29835C29835-C-11B.1.617.30.002985
noncoding29835C29835-C-11B.1.6270.00202
noncoding29835C29835-C-11B.1.6300.005236
noncoding29835C29835-C-11C.260.007353
noncoding29835C29835-C-11P.1.120.000484
noncoding29835C29835-C-11P.1.170.000162
noncoding29835C29835-C-11P.1.70.000319
noncoding29835C29835-C-11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.