CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29835 | C29835T | noncoding | C | T | 6354 | 6354 | 1 | 29835-29835 | |
noncoding | 29835 | C29835- | noncoding | C | - | 1029 | 1029 | 1 | 29835-29835 | |
noncoding | 29835 | C29835A | noncoding | C | A | 545 | 545 | 1 | 29835-29835 | |
noncoding | 29835 | C29835G | noncoding | C | G | 32 | 32 | 1 | 29835-29835 | |
noncoding | 29835 | C29835W | noncoding | C | W | 3 | 3 | 1 | 29835-29835 | |
noncoding | 29835 | C29835B | noncoding | C | B | 2 | 2 | 1 | 29835-29835 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29835 | C29835T | C | T | 6354 | 6354 | All | 0.001215 |
noncoding | 29835 | C29835T | C | T | 2762 | 2762 | AY.4 | 0.004299 |
noncoding | 29835 | C29835- | C | - | 1029 | 1029 | All | 0.000197 |
noncoding | 29835 | C29835T | C | T | 642 | 642 | B.1.1.7 | 0.000575 |
noncoding | 29835 | C29835A | C | A | 545 | 545 | All | 0.000104 |
noncoding | 29835 | C29835T | C | T | 463 | 463 | B.1.1.222 | 0.094451 |
noncoding | 29835 | C29835- | C | - | 405 | 405 | B.1.1.7 | 0.000363 |
noncoding | 29835 | C29835T | C | T | 200 | 200 | AY.43 | 0.000886 |
noncoding | 29835 | C29835T | C | T | 197 | 197 | B.1 | 0.001804 |
noncoding | 29835 | C29835T | C | T | 190 | 190 | B.1.617.2 | 0.000715 |
noncoding | 29835 | C29835T | C | T | 175 | 175 | B.1.177.21 | 0.013382 |
noncoding | 29835 | C29835T | C | T | 132 | 132 | AY.4.1 | 0.097345 |
noncoding | 29835 | C29835A | C | A | 114 | 114 | AY.33 | 0.007613 |
noncoding | 29835 | C29835A | C | A | 96 | 96 | AY.102 | 0.002545 |
noncoding | 29835 | C29835T | C | T | 92 | 92 | AY.103 | 0.000571 |
noncoding | 29835 | C29835T | C | T | 84 | 84 | B.1.1.47 | 0.449198 |
noncoding | 29835 | C29835A | C | A | 84 | 84 | B.1.1.7 | 0.000075 |
noncoding | 29835 | C29835T | C | T | 83 | 83 | B.1.177 | 0.001093 |
noncoding | 29835 | C29835T | C | T | 77 | 77 | Q.2 | 0.047239 |
noncoding | 29835 | C29835T | C | T | 64 | 64 | AY.39 | 0.001582 |
noncoding | 29835 | C29835A | C | A | 64 | 64 | B.1.617.2 | 0.000241 |
noncoding | 29835 | C29835T | C | T | 50 | 50 | B.1.2 | 0.00044 |
noncoding | 29835 | C29835T | C | T | 50 | 50 | B.1.429 | 0.001176 |
noncoding | 29835 | C29835T | C | T | 48 | 48 | AY.20 | 0.001866 |
noncoding | 29835 | C29835T | C | T | 45 | 45 | AY.25 | 0.000271 |
noncoding | 29835 | C29835T | C | T | 41 | 41 | AY.23 | 0.00286 |
noncoding | 29835 | C29835T | C | T | 41 | 41 | B.1.1 | 0.000744 |
noncoding | 29835 | C29835- | C | - | 40 | 40 | B.1.617.2 | 0.000151 |
noncoding | 29835 | C29835- | C | - | 38 | 38 | AY.25 | 0.000229 |
noncoding | 29835 | C29835T | C | T | 38 | 38 | AY.3 | 0.000378 |
noncoding | 29835 | C29835T | C | T | 38 | 38 | AY.44 | 0.000231 |
noncoding | 29835 | C29835- | C | - | 38 | 38 | AY.47 | 0.001182 |
noncoding | 29835 | C29835- | C | - | 38 | 38 | B.1.1.317 | 0.015644 |
noncoding | 29835 | C29835A | C | A | 37 | 37 | B.1.2 | 0.000326 |
noncoding | 29835 | C29835- | C | - | 34 | 34 | C.37 | 0.003946 |
noncoding | 29835 | C29835G | C | G | 32 | 32 | All | 0.000006 |
noncoding | 29835 | C29835T | C | T | 32 | 32 | R.1 | 0.00288 |
noncoding | 29835 | C29835T | C | T | 31 | 31 | AY.102 | 0.000822 |
noncoding | 29835 | C29835- | C | - | 31 | 31 | AY.43 | 0.000137 |
noncoding | 29835 | C29835T | C | T | 31 | 31 | B.1.258 | 0.002063 |
noncoding | 29835 | C29835A | C | A | 29 | 29 | AY.39 | 0.000717 |
noncoding | 29835 | C29835T | C | T | 28 | 28 | AY.120 | 0.001041 |
noncoding | 29835 | C29835T | C | T | 28 | 28 | B.1.1.519 | 0.001112 |
noncoding | 29835 | C29835- | C | - | 23 | 23 | B.1.1 | 0.000417 |
noncoding | 29835 | C29835T | C | T | 23 | 23 | B.1.160 | 0.000717 |
noncoding | 29835 | C29835T | C | T | 23 | 23 | B.1.243 | 0.0016 |
noncoding | 29835 | C29835T | C | T | 23 | 23 | P.1 | 0.000362 |
noncoding | 29835 | C29835A | C | A | 22 | 22 | AY.43 | 0.000097 |
noncoding | 29835 | C29835T | C | T | 20 | 20 | AY.29 | 0.000315 |
noncoding | 29835 | C29835T | C | T | 19 | 19 | B.1.1.396 | 0.863636 |
noncoding | 29835 | C29835- | C | - | 18 | 18 | AY.103 | 0.000112 |
noncoding | 29835 | C29835- | C | - | 18 | 18 | AY.26 | 0.00051 |
noncoding | 29835 | C29835- | C | - | 18 | 18 | AY.44 | 0.00011 |
noncoding | 29835 | C29835T | C | T | 17 | 17 | AY.119 | 0.0006 |
noncoding | 29835 | C29835T | C | T | 17 | 17 | AY.26 | 0.000481 |
noncoding | 29835 | C29835T | C | T | 17 | 17 | B.1.350 | 0.049853 |
noncoding | 29835 | C29835A | C | A | 16 | 16 | AY.120 | 0.000595 |
noncoding | 29835 | C29835T | C | T | 16 | 16 | C.36.3 | 0.009075 |
noncoding | 29835 | C29835T | C | T | 15 | 15 | B.1.1.330 | 0.9375 |
noncoding | 29835 | C29835- | C | - | 15 | 15 | B.1.2 | 0.000132 |
noncoding | 29835 | C29835- | C | - | 15 | 15 | B.1.369 | 0.004278 |
noncoding | 29835 | C29835T | C | T | 13 | 13 | AY.1 | 0.005144 |
noncoding | 29835 | C29835- | C | - | 13 | 13 | AY.5 | 0.000268 |
noncoding | 29835 | C29835- | C | - | 13 | 13 | B.1 | 0.000119 |
noncoding | 29835 | C29835T | C | T | 13 | 13 | P.2 | 0.002426 |
noncoding | 29835 | C29835- | C | - | 12 | 12 | AY.39 | 0.000297 |
noncoding | 29835 | C29835- | C | - | 12 | 12 | AY.4 | 0.000019 |
noncoding | 29835 | C29835- | C | - | 12 | 12 | B.1.1.519 | 0.000477 |
noncoding | 29835 | C29835- | C | - | 11 | 11 | AY.102 | 0.000292 |
noncoding | 29835 | C29835T | C | T | 11 | 11 | AY.33 | 0.000735 |
noncoding | 29835 | C29835T | C | T | 11 | 11 | B.1.1.348 | 0.008758 |
noncoding | 29835 | C29835T | C | T | 11 | 11 | B.1.351 | 0.000327 |
noncoding | 29835 | C29835T | C | T | 10 | 10 | AY.5 | 0.000206 |
noncoding | 29835 | C29835T | C | T | 10 | 10 | B.1.36 | 0.001459 |
noncoding | 29835 | C29835T | C | T | 10 | 10 | B.1.637 | 0.000731 |
noncoding | 29835 | C29835T | C | T | 9 | 9 | AY.5.4 | 0.00249 |
noncoding | 29835 | C29835T | C | T | 9 | 9 | AY.9.1 | 0.000754 |
noncoding | 29835 | C29835T | C | T | 9 | 9 | B.1.595 | 0.002349 |
noncoding | 29835 | C29835- | C | - | 9 | 9 | P.1 | 0.000142 |
noncoding | 29835 | C29835T | C | T | 8 | 8 | AY.111 | 0.001465 |
noncoding | 29835 | C29835T | C | T | 8 | 8 | AY.42 | 0.000322 |
noncoding | 29835 | C29835T | C | T | 8 | 8 | AY.6 | 0.000329 |
noncoding | 29835 | C29835G | C | G | 8 | 8 | B.1.1.7 | 0.000007 |
noncoding | 29835 | C29835- | C | - | 8 | 8 | B.1.177 | 0.000105 |
noncoding | 29835 | C29835T | C | T | 8 | 8 | B.1.177.86 | 0.001468 |
noncoding | 29835 | C29835T | C | T | 8 | 8 | B.1.369 | 0.002282 |
noncoding | 29835 | C29835T | C | T | 8 | 8 | B.1.595.2 | 0.32 |
noncoding | 29835 | C29835T | C | T | 8 | 8 | D.2 | 0.0006 |
noncoding | 29835 | C29835A | C | A | 7 | 7 | AY.25 | 0.000042 |
noncoding | 29835 | C29835T | C | T | 7 | 7 | AY.69 | 0.001307 |
noncoding | 29835 | C29835T | C | T | 7 | 7 | AY.92 | 0.002011 |
noncoding | 29835 | C29835T | C | T | 7 | 7 | B.1.177.17 | 0.005747 |
noncoding | 29835 | C29835T | C | T | 7 | 7 | B.1.427 | 0.000353 |
noncoding | 29835 | C29835A | C | A | 7 | 7 | P.1 | 0.00011 |
noncoding | 29835 | C29835- | C | - | 7 | 7 | P.2 | 0.001306 |
noncoding | 29835 | C29835T | C | T | 6 | 6 | AY.100 | 0.000276 |
noncoding | 29835 | C29835- | C | - | 6 | 6 | AY.3 | 0.00006 |
noncoding | 29835 | C29835A | C | A | 6 | 6 | AY.44 | 0.000037 |
noncoding | 29835 | C29835T | C | T | 6 | 6 | AY.53 | 0.001725 |
noncoding | 29835 | C29835T | C | T | 6 | 6 | AY.61 | 0.000629 |
noncoding | 29835 | C29835T | C | T | 6 | 6 | AY.9 | 0.000406 |
noncoding | 29835 | C29835- | C | - | 6 | 6 | AY.98.1 | 0.000291 |
noncoding | 29835 | C29835- | C | - | 6 | 6 | AY.99.2 | 0.000553 |
noncoding | 29835 | C29835T | C | T | 6 | 6 | B.1.1.291 | 0.004454 |
noncoding | 29835 | C29835T | C | T | 6 | 6 | B.1.1.318 | 0.001811 |
noncoding | 29835 | C29835- | C | - | 6 | 6 | B.1.221 | 0.000426 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | B.1.1.409 | 0.014164 |
noncoding | 29835 | C29835- | C | - | 5 | 5 | B.1.160 | 0.000156 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | B.1.177.4 | 0.001055 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | B.1.177.81 | 0.000947 |
noncoding | 29835 | C29835- | C | - | 5 | 5 | B.1.526 | 0.000118 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | B.1.565 | 0.004052 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | B.1.586 | 0.054945 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | B.1.606 | 0.03012 |
noncoding | 29835 | C29835- | C | - | 5 | 5 | B.1.637 | 0.000365 |
noncoding | 29835 | C29835- | C | - | 5 | 5 | C.1 | 0.011962 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | C.37 | 0.00058 |
noncoding | 29835 | C29835T | C | T | 5 | 5 | P.1.7 | 0.001596 |
noncoding | 29835 | C29835- | C | - | 4 | 4 | AY.36 | 0.000593 |
noncoding | 29835 | C29835A | C | A | 4 | 4 | AY.4 | 0.000006 |
noncoding | 29835 | C29835- | C | - | 4 | 4 | AY.84 | 0.00175 |
noncoding | 29835 | C29835A | C | A | 4 | 4 | AY.92 | 0.001149 |
noncoding | 29835 | C29835T | C | T | 4 | 4 | AY.98 | 0.000316 |
noncoding | 29835 | C29835- | C | - | 4 | 4 | AZ.2 | 0.003284 |
noncoding | 29835 | C29835T | C | T | 4 | 4 | B.1.1.70 | 0.001364 |
noncoding | 29835 | C29835- | C | - | 4 | 4 | B.1.258 | 0.000266 |
noncoding | 29835 | C29835T | C | T | 4 | 4 | B.1.36.29 | 0.002069 |
noncoding | 29835 | C29835T | C | T | 4 | 4 | B.1.545 | 0.057971 |
noncoding | 29835 | C29835W | C | W | 3 | 3 | All | 0.000001 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AY.118 | 0.000188 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AY.120.1 | 0.000963 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | AY.20 | 0.000117 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AY.47 | 0.000093 |
noncoding | 29835 | C29835A | C | A | 3 | 3 | AY.47 | 0.000093 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AY.5.3 | 0.001012 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AY.54 | 0.000286 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AY.75 | 0.000168 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | AY.9 | 0.000203 |
noncoding | 29835 | C29835A | C | A | 3 | 3 | AY.9.1 | 0.000251 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AY.98.1 | 0.000145 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | AZ.3 | 0.004559 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | B.1.1.218 | 0.023077 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | B.1.1.448 | 0.006098 |
noncoding | 29835 | C29835A | C | A | 3 | 3 | B.1.1.519 | 0.000119 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | B.1.1.526 | 0.010638 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | B.1.1.63 | 0.001157 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | B.1.177.44 | 0.001557 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | B.1.218 | 0.015464 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | B.1.221.3 | 0.0025 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | B.1.240 | 0.000647 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | B.1.351 | 0.000089 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | B.1.429 | 0.000071 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | B.1.596 | 0.000261 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | B.6.6 | 0.002667 |
noncoding | 29835 | C29835- | C | - | 3 | 3 | C.36.3 | 0.001702 |
noncoding | 29835 | C29835T | C | T | 3 | 3 | Q.1 | 0.000379 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | 0.111111 | |
noncoding | 29835 | C29835- | C | - | 2 | 2 | A | 0.000774 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AD.2 | 0.000438 |
noncoding | 29835 | C29835B | C | B | 2 | 2 | All | 0 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | AY.103 | 0.000012 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.107 | 0.000932 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.108 | 0.002205 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.113 | 0.000285 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.117 | 0.000169 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.117 | 0.000169 |
noncoding | 29835 | C29835G | C | G | 2 | 2 | AY.120 | 0.000074 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.13 | 0.000322 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.19 | 0.002281 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.4.2 | 0.000043 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.4.4 | 0.000818 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | AY.42 | 0.00008 |
noncoding | 29835 | C29835G | C | G | 2 | 2 | AY.43 | 0.000009 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | AY.46 | 0.000208 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | AY.46.4 | 0.000329 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.46.6 | 0.000144 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.48 | 0.00093 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.52 | 0.001629 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.54 | 0.000191 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.61 | 0.00021 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.68 | 0.000547 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.7.1 | 0.000225 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.70 | 0.000417 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.74 | 0.000231 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.75 | 0.000112 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.75.1 | 0.000361 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | AY.84 | 0.000875 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.84 | 0.000875 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | AY.9.2 | 0.000073 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | AY.9.2 | 0.000073 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | AY.9.2 | 0.000073 |
noncoding | 29835 | C29835G | C | G | 2 | 2 | B | 0.000256 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B | 0.000256 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.1.166 | 0.066667 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.1.222 | 0.000408 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.1.28 | 0.000622 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.1.354 | 0.008772 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.1.413 | 0.013793 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.1.46 | 0.008734 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.1.50 | 0.001358 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.111 | 0.00235 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.177.86 | 0.000367 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.210 | 0.004264 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.210 | 0.004264 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.237 | 0.00995 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | B.1.258.17 | 0.000208 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.258.17 | 0.000208 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.329 | 0.001215 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.36.29 | 0.001035 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.400 | 0.000858 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.427 | 0.000101 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.497 | 0.00063 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.497 | 0.00063 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.517 | 0.000854 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.526 | 0.000047 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.558 | 0.009132 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | C.36 | 0.001821 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | P.1.1 | 0.000635 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 29835 | C29835- | C | - | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | P.1.17 | 0.000324 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | P.1.4 | 0.001953 |
noncoding | 29835 | C29835A | C | A | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | P.4 | 0.007605 |
noncoding | 29835 | C29835T | C | T | 2 | 2 | P.7 | 0.008734 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | 0.055556 | |
noncoding | 29835 | C29835T | C | T | 1 | 1 | A.1 | 0.000282 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | A.2 | 0.000662 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | A.2 | 0.000662 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | A.2.5.2 | 0.001572 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | A.23.1 | 0.000704 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.1 | 0.000396 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.105 | 0.000643 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.107 | 0.000466 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.11 | 0.001339 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.116 | 0.000287 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.116.1 | 0.000311 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | AY.118 | 0.000063 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.119 | 0.000035 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | AY.120.2 | 0.001285 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.121 | 0.000135 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.121 | 0.000135 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.2 | 0.000356 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.24 | 0.000431 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.28 | 0.00189 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.29 | 0.000016 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.3 | 0.00001 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.30 | 0.000396 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.36 | 0.000148 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.38 | 0.000499 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.4.3 | 0.000842 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.41 | 0.000294 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.57 | 0.000656 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.6 | 0.000041 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.6 | 0.000041 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.67 | 0.000464 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | AY.69 | 0.000187 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.7.2 | 0.000559 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.76 | 0.004831 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.78 | 0.001541 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.90 | 0.000684 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.99 | 0.001049 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B | 0.000128 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1 | 0.000009 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1 | 0.000009 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29835 | C29835B | C | B | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.135 | 0.004695 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.184 | 0.058824 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.192 | 0.002309 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.198 | 0.001468 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.207 | 0.001182 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.220 | 0.001859 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.230 | 0.009174 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.236 | 0.006897 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.236 | 0.006897 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.268 | 0.014925 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.311 | 0.000358 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.1.317 | 0.000412 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.397 | 0.002252 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.1.397 | 0.002252 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.487 | 0.005587 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.51 | 0.001718 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.515 | 0.02 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.517 | 0.006803 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.1.518 | 0.006329 |
noncoding | 29835 | C29835W | C | W | 1 | 1 | B.1.1.519 | 0.00004 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.54 | 0.003021 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.1.99 | 0.02381 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.110.3 | 0.000718 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.160.30 | 0.002976 |
noncoding | 29835 | C29835B | C | B | 1 | 1 | B.1.177 | 0.000013 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.177.18 | 0.00116 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.177.28 | 0.007407 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.177.46 | 0.000918 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.177.50 | 0.004695 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.177.56 | 0.000668 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.214.2 | 0.0006 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.23 | 0.006061 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.242 | 0.018868 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.265 | 0.001271 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.36.10 | 0.004785 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.36.17 | 0.000494 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.36.38 | 0.001642 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.381 | 0.007812 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.391 | 0.001127 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.426 | 0.001009 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.441 | 0.009615 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.448 | 0.002625 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.466.2 | 0.000391 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.546 | 0.003704 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.574 | 0.002151 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.575.1 | 0.002439 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.603 | 0.010638 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.609 | 0.000479 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | B.1.617.2 | 0.000004 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.627 | 0.00202 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.628 | 0.000352 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.76 | 0.011364 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.8 | 0.001972 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.88.1 | 0.004808 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.1.9 | 0.006173 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | B.40 | 0.000364 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | C.11 | 0.010638 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | C.26 | 0.007353 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | C.36 | 0.000911 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | N.5 | 0.001767 |
noncoding | 29835 | C29835W | C | W | 1 | 1 | P.1 | 0.000016 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 29835 | C29835W | C | W | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29835 | C29835A | C | A | 1 | 1 | P.1.4 | 0.000977 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | P.1.7 | 0.000319 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | P.3 | 0.001595 |
noncoding | 29835 | C29835G | C | G | 1 | 1 | Q.1 | 0.000126 |
noncoding | 29835 | C29835- | C | - | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29835 | C29835T | C | T | 1 | 1 | Q.6 | 0.006623 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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