CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29834 | T29834C | noncoding | T | C | 1201 | 1201 | 1 | 29834-29834 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29834 | T29834C | T | C | 1201 | 1201 | All | 0.00023 |
noncoding | 29834 | T29834C | T | C | 496 | 496 | B.1.1.7 | 0.000444 |
noncoding | 29834 | T29834C | T | C | 62 | 62 | B.1.617.2 | 0.000233 |
noncoding | 29834 | T29834C | T | C | 47 | 47 | AY.44 | 0.000286 |
noncoding | 29834 | T29834C | T | C | 44 | 44 | AY.4 | 0.000068 |
noncoding | 29834 | T29834C | T | C | 36 | 36 | AY.25 | 0.000217 |
noncoding | 29834 | T29834C | T | C | 32 | 32 | AY.43 | 0.000142 |
noncoding | 29834 | T29834C | T | C | 31 | 31 | AY.118 | 0.001942 |
noncoding | 29834 | T29834C | T | C | 27 | 27 | B.1 | 0.000247 |
noncoding | 29834 | T29834C | T | C | 26 | 26 | AY.11 | 0.034806 |
noncoding | 29834 | T29834C | T | C | 23 | 23 | B.1.2 | 0.000203 |
noncoding | 29834 | T29834C | T | C | 22 | 22 | B.1.240 | 0.004742 |
noncoding | 29834 | T29834C | T | C | 21 | 21 | B.1.177 | 0.000277 |
noncoding | 29834 | T29834C | T | C | 20 | 20 | P.1 | 0.000315 |
noncoding | 29834 | T29834C | T | C | 18 | 18 | AY.33 | 0.001202 |
noncoding | 29834 | T29834C | T | C | 13 | 13 | AY.102 | 0.000345 |
noncoding | 29834 | T29834C | T | C | 13 | 13 | AY.9.2 | 0.000477 |
noncoding | 29834 | T29834C | T | C | 13 | 13 | B.1.1 | 0.000236 |
noncoding | 29834 | T29834C | T | C | 12 | 12 | AY.103 | 0.000075 |
noncoding | 29834 | T29834C | T | C | 12 | 12 | AY.26 | 0.00034 |
noncoding | 29834 | T29834C | T | C | 11 | 11 | AY.23 | 0.000767 |
noncoding | 29834 | T29834C | T | C | 11 | 11 | AY.98 | 0.000869 |
noncoding | 29834 | T29834C | T | C | 8 | 8 | B.1.1.519 | 0.000318 |
noncoding | 29834 | T29834C | T | C | 7 | 7 | AY.120 | 0.00026 |
noncoding | 29834 | T29834C | T | C | 7 | 7 | AY.39 | 0.000173 |
noncoding | 29834 | T29834C | T | C | 7 | 7 | B.1.351 | 0.000208 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.119 | 0.000212 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.3 | 0.00006 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.47 | 0.000187 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.6 | 0.000247 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.61 | 0.000629 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | B.1.596 | 0.000523 |
noncoding | 29834 | T29834C | T | C | 5 | 5 | B.1.258 | 0.000333 |
noncoding | 29834 | T29834C | T | C | 5 | 5 | C.37 | 0.00058 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | AY.4.2 | 0.000087 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | B.1.1.159 | 0.018692 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | B.1.1.428 | 0.037736 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | C.37.1 | 0.010471 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | P.1.16 | 0.001496 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | P.1.17 | 0.000647 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.106 | 0.001005 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.42 | 0.000121 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.46 | 0.000312 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.85 | 0.001282 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | B.1.1.317 | 0.001235 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | B.1.160 | 0.000094 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | P.1.14 | 0.000143 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.113 | 0.000285 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.37 | 0.000632 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.1.10 | 0.00223 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.1.263 | 0.003115 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.111 | 0.00235 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.526 | 0.000047 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.561 | 0.000794 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.568 | 0.002222 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.576 | 0.001813 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.619 | 0.001742 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | Q.1 | 0.000253 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | A.2 | 0.000662 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.46.4 | 0.000165 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.60 | 0.000938 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.74 | 0.000116 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.1 | 0.000327 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.158 | 0.012195 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.363 | 0.005988 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.376 | 0.005952 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.44 | 0.00241 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.442 | 0.018519 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.464 | 0.001473 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.61 | 0.008772 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.83 | 0.00271 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.110.3 | 0.000718 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.52 | 0.001757 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.73 | 0.000566 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.236 | 0.002053 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.258.11 | 0.000396 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.320 | 0.001245 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.321 | 0.034483 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.338 | 0.008621 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.351.1 | 0.038462 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.466.1 | 0.007194 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.589 | 0.007576 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | D.2 | 0.000075 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | K.1 | 0.02381 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | P.1.2 | 0.001156 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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