CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29834 | T29834A | noncoding | T | A | 67446 | 67446 | 1 | 29834-29834 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29834 | T29834A | T | A | 67446 | 67446 | All | 0.0129 |
noncoding | 29834 | T29834A | T | A | 41355 | 41355 | P.1 | 0.651506 |
noncoding | 29834 | T29834A | T | A | 8039 | 8039 | P.1.14 | 0.384273 |
noncoding | 29834 | T29834A | T | A | 3986 | 3986 | P.1.17 | 0.644775 |
noncoding | 29834 | T29834A | T | A | 2423 | 2423 | P.1.10 | 0.652924 |
noncoding | 29834 | T29834A | T | A | 2229 | 2229 | P.1.7 | 0.711686 |
noncoding | 29834 | T29834A | T | A | 1790 | 1790 | P.1.1 | 0.568615 |
noncoding | 29834 | T29834A | T | A | 1514 | 1514 | P.1.15 | 0.351766 |
noncoding | 29834 | T29834A | T | A | 1177 | 1177 | P.1.12 | 0.5697 |
noncoding | 29834 | T29834A | T | A | 970 | 970 | P.1.4 | 0.947266 |
noncoding | 29834 | T29834A | T | A | 936 | 936 | P.1.16 | 0.350168 |
noncoding | 29834 | T29834A | T | A | 680 | 680 | P.1.13 | 0.610961 |
noncoding | 29834 | T29834A | T | A | 638 | 638 | P.1.2 | 0.737572 |
noncoding | 29834 | T29834A | T | A | 485 | 485 | P.1.6 | 0.94358 |
noncoding | 29834 | T29834A | T | A | 177 | 177 | P.1.8 | 0.84689 |
noncoding | 29834 | T29834A | T | A | 174 | 174 | P.1.9 | 0.836538 |
noncoding | 29834 | T29834A | T | A | 169 | 169 | P.1.17.1 | 0.147857 |
noncoding | 29834 | T29834A | T | A | 149 | 149 | B.1.1.7 | 0.000133 |
noncoding | 29834 | T29834A | T | A | 89 | 89 | P.1.10.1 | 0.723577 |
noncoding | 29834 | T29834A | T | A | 85 | 85 | P.1.11 | 0.867347 |
noncoding | 29834 | T29834A | T | A | 55 | 55 | B.1 | 0.000504 |
noncoding | 29834 | T29834A | T | A | 54 | 54 | B.1.1.39 | 0.027523 |
noncoding | 29834 | T29834A | T | A | 39 | 39 | B.1.1 | 0.000707 |
noncoding | 29834 | T29834A | T | A | 26 | 26 | P.1.3 | 0.896552 |
noncoding | 29834 | T29834A | T | A | 23 | 23 | P.2 | 0.004293 |
noncoding | 29834 | T29834A | T | A | 22 | 22 | P.1.10.2 | 0.916667 |
noncoding | 29834 | T29834A | T | A | 12 | 12 | B.1.617.2 | 0.000045 |
noncoding | 29834 | T29834A | T | A | 11 | 11 | B.1.1.28 | 0.003424 |
noncoding | 29834 | T29834A | T | A | 11 | 11 | P.1.5 | 0.846154 |
noncoding | 29834 | T29834A | T | A | 8 | 8 | AY.119 | 0.000282 |
noncoding | 29834 | T29834A | T | A | 8 | 8 | B.1.1.528 | 0.038462 |
noncoding | 29834 | T29834A | T | A | 7 | 7 | AY.4 | 0.000011 |
noncoding | 29834 | T29834A | T | A | 7 | 7 | AY.43 | 0.000031 |
noncoding | 29834 | T29834A | T | A | 5 | 5 | B.1.160 | 0.000156 |
noncoding | 29834 | T29834A | T | A | 4 | 4 | AY.9.2 | 0.000147 |
noncoding | 29834 | T29834A | T | A | 4 | 4 | AY.99.2 | 0.000369 |
noncoding | 29834 | T29834A | T | A | 4 | 4 | C.37 | 0.000464 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | AY.103 | 0.000019 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | AY.23 | 0.000209 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | AY.44 | 0.000018 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | B.1.177 | 0.00004 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | B.1.258 | 0.0002 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | A.1 | 0.000564 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | A.2.5 | 0.000998 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | AY.42 | 0.00008 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.1.519 | 0.000079 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.349 | 0.00143 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.427 | 0.000101 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | Q.1 | 0.000253 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | 0.055556 | |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.101 | 0.00049 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.116 | 0.000287 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.39 | 0.000025 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.5 | 0.000021 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.73 | 0.000665 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.142 | 0.017544 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.198 | 0.001468 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.265 | 0.003155 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.157 | 0.002985 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.170 | 0.00431 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.214.2 | 0.0006 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.235 | 0.002519 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.326 | 0.007576 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.36.10 | 0.004785 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.375 | 0.00082 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.400 | 0.000429 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.619.1 | 0.000641 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.9 | 0.006173 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.91 | 0.002075 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | N.4 | 0.004255 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | P.4 | 0.003802 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | Q.2 | 0.000613 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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