CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29834 | T29834A | noncoding | T | A | 67446 | 67446 | 1 | 29834-29834 | |
noncoding | 29834 | T29834C | noncoding | T | C | 1201 | 1201 | 1 | 29834-29834 | |
noncoding | 29834 | T29834- | noncoding | T | - | 530 | 530 | 1 | 29834-29834 | |
noncoding | 29834 | T29834G | noncoding | T | G | 77 | 77 | 1 | 29834-29834 | |
noncoding | 29834 | T29834R | noncoding | T | R | 1 | 1 | 1 | 29834-29834 | |
noncoding | 29834 | T29834H | noncoding | T | H | 1 | 1 | 1 | 29834-29834 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29834 | T29834A | T | A | 67446 | 67446 | All | 0.0129 |
noncoding | 29834 | T29834A | T | A | 41355 | 41355 | P.1 | 0.651506 |
noncoding | 29834 | T29834A | T | A | 8039 | 8039 | P.1.14 | 0.384273 |
noncoding | 29834 | T29834A | T | A | 3986 | 3986 | P.1.17 | 0.644775 |
noncoding | 29834 | T29834A | T | A | 2423 | 2423 | P.1.10 | 0.652924 |
noncoding | 29834 | T29834A | T | A | 2229 | 2229 | P.1.7 | 0.711686 |
noncoding | 29834 | T29834A | T | A | 1790 | 1790 | P.1.1 | 0.568615 |
noncoding | 29834 | T29834A | T | A | 1514 | 1514 | P.1.15 | 0.351766 |
noncoding | 29834 | T29834C | T | C | 1201 | 1201 | All | 0.00023 |
noncoding | 29834 | T29834A | T | A | 1177 | 1177 | P.1.12 | 0.5697 |
noncoding | 29834 | T29834A | T | A | 970 | 970 | P.1.4 | 0.947266 |
noncoding | 29834 | T29834A | T | A | 936 | 936 | P.1.16 | 0.350168 |
noncoding | 29834 | T29834A | T | A | 680 | 680 | P.1.13 | 0.610961 |
noncoding | 29834 | T29834A | T | A | 638 | 638 | P.1.2 | 0.737572 |
noncoding | 29834 | T29834- | T | - | 530 | 530 | All | 0.000101 |
noncoding | 29834 | T29834C | T | C | 496 | 496 | B.1.1.7 | 0.000444 |
noncoding | 29834 | T29834A | T | A | 485 | 485 | P.1.6 | 0.94358 |
noncoding | 29834 | T29834- | T | - | 310 | 310 | B.1.1.7 | 0.000278 |
noncoding | 29834 | T29834A | T | A | 177 | 177 | P.1.8 | 0.84689 |
noncoding | 29834 | T29834A | T | A | 174 | 174 | P.1.9 | 0.836538 |
noncoding | 29834 | T29834A | T | A | 169 | 169 | P.1.17.1 | 0.147857 |
noncoding | 29834 | T29834A | T | A | 149 | 149 | B.1.1.7 | 0.000133 |
noncoding | 29834 | T29834A | T | A | 89 | 89 | P.1.10.1 | 0.723577 |
noncoding | 29834 | T29834A | T | A | 85 | 85 | P.1.11 | 0.867347 |
noncoding | 29834 | T29834G | T | G | 77 | 77 | All | 0.000015 |
noncoding | 29834 | T29834C | T | C | 62 | 62 | B.1.617.2 | 0.000233 |
noncoding | 29834 | T29834A | T | A | 55 | 55 | B.1 | 0.000504 |
noncoding | 29834 | T29834A | T | A | 54 | 54 | B.1.1.39 | 0.027523 |
noncoding | 29834 | T29834C | T | C | 47 | 47 | AY.44 | 0.000286 |
noncoding | 29834 | T29834C | T | C | 44 | 44 | AY.4 | 0.000068 |
noncoding | 29834 | T29834G | T | G | 44 | 44 | B.1.1.7 | 0.000039 |
noncoding | 29834 | T29834A | T | A | 39 | 39 | B.1.1 | 0.000707 |
noncoding | 29834 | T29834C | T | C | 36 | 36 | AY.25 | 0.000217 |
noncoding | 29834 | T29834C | T | C | 32 | 32 | AY.43 | 0.000142 |
noncoding | 29834 | T29834C | T | C | 31 | 31 | AY.118 | 0.001942 |
noncoding | 29834 | T29834C | T | C | 27 | 27 | B.1 | 0.000247 |
noncoding | 29834 | T29834C | T | C | 26 | 26 | AY.11 | 0.034806 |
noncoding | 29834 | T29834A | T | A | 26 | 26 | P.1.3 | 0.896552 |
noncoding | 29834 | T29834C | T | C | 23 | 23 | B.1.2 | 0.000203 |
noncoding | 29834 | T29834A | T | A | 23 | 23 | P.2 | 0.004293 |
noncoding | 29834 | T29834C | T | C | 22 | 22 | B.1.240 | 0.004742 |
noncoding | 29834 | T29834A | T | A | 22 | 22 | P.1.10.2 | 0.916667 |
noncoding | 29834 | T29834C | T | C | 21 | 21 | B.1.177 | 0.000277 |
noncoding | 29834 | T29834C | T | C | 20 | 20 | P.1 | 0.000315 |
noncoding | 29834 | T29834C | T | C | 18 | 18 | AY.33 | 0.001202 |
noncoding | 29834 | T29834- | T | - | 17 | 17 | B.1.617.2 | 0.000064 |
noncoding | 29834 | T29834C | T | C | 13 | 13 | AY.102 | 0.000345 |
noncoding | 29834 | T29834C | T | C | 13 | 13 | AY.9.2 | 0.000477 |
noncoding | 29834 | T29834C | T | C | 13 | 13 | B.1.1 | 0.000236 |
noncoding | 29834 | T29834- | T | - | 13 | 13 | B.1.1 | 0.000236 |
noncoding | 29834 | T29834- | T | - | 13 | 13 | P.1 | 0.000205 |
noncoding | 29834 | T29834C | T | C | 12 | 12 | AY.103 | 0.000075 |
noncoding | 29834 | T29834C | T | C | 12 | 12 | AY.26 | 0.00034 |
noncoding | 29834 | T29834A | T | A | 12 | 12 | B.1.617.2 | 0.000045 |
noncoding | 29834 | T29834C | T | C | 11 | 11 | AY.23 | 0.000767 |
noncoding | 29834 | T29834C | T | C | 11 | 11 | AY.98 | 0.000869 |
noncoding | 29834 | T29834A | T | A | 11 | 11 | B.1.1.28 | 0.003424 |
noncoding | 29834 | T29834A | T | A | 11 | 11 | P.1.5 | 0.846154 |
noncoding | 29834 | T29834- | T | - | 9 | 9 | B.1.1.519 | 0.000357 |
noncoding | 29834 | T29834A | T | A | 8 | 8 | AY.119 | 0.000282 |
noncoding | 29834 | T29834- | T | - | 8 | 8 | AY.4 | 0.000012 |
noncoding | 29834 | T29834- | T | - | 8 | 8 | B.1 | 0.000073 |
noncoding | 29834 | T29834C | T | C | 8 | 8 | B.1.1.519 | 0.000318 |
noncoding | 29834 | T29834A | T | A | 8 | 8 | B.1.1.528 | 0.038462 |
noncoding | 29834 | T29834C | T | C | 7 | 7 | AY.120 | 0.00026 |
noncoding | 29834 | T29834C | T | C | 7 | 7 | AY.39 | 0.000173 |
noncoding | 29834 | T29834A | T | A | 7 | 7 | AY.4 | 0.000011 |
noncoding | 29834 | T29834A | T | A | 7 | 7 | AY.43 | 0.000031 |
noncoding | 29834 | T29834C | T | C | 7 | 7 | B.1.351 | 0.000208 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.119 | 0.000212 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.3 | 0.00006 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.47 | 0.000187 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.6 | 0.000247 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | AY.61 | 0.000629 |
noncoding | 29834 | T29834C | T | C | 6 | 6 | B.1.596 | 0.000523 |
noncoding | 29834 | T29834G | T | G | 6 | 6 | B.1.617.2 | 0.000023 |
noncoding | 29834 | T29834- | T | - | 5 | 5 | AY.43 | 0.000022 |
noncoding | 29834 | T29834- | T | - | 5 | 5 | AY.99.2 | 0.000461 |
noncoding | 29834 | T29834A | T | A | 5 | 5 | B.1.160 | 0.000156 |
noncoding | 29834 | T29834- | T | - | 5 | 5 | B.1.2 | 0.000044 |
noncoding | 29834 | T29834C | T | C | 5 | 5 | B.1.258 | 0.000333 |
noncoding | 29834 | T29834- | T | - | 5 | 5 | C.1 | 0.011962 |
noncoding | 29834 | T29834C | T | C | 5 | 5 | C.37 | 0.00058 |
noncoding | 29834 | T29834G | T | G | 5 | 5 | P.1 | 0.000079 |
noncoding | 29834 | T29834- | T | - | 4 | 4 | AY.102 | 0.000106 |
noncoding | 29834 | T29834- | T | - | 4 | 4 | AY.25 | 0.000024 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | AY.4.2 | 0.000087 |
noncoding | 29834 | T29834A | T | A | 4 | 4 | AY.9.2 | 0.000147 |
noncoding | 29834 | T29834A | T | A | 4 | 4 | AY.99.2 | 0.000369 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | B.1.1.159 | 0.018692 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | B.1.1.428 | 0.037736 |
noncoding | 29834 | T29834- | T | - | 4 | 4 | B.1.177 | 0.000053 |
noncoding | 29834 | T29834- | T | - | 4 | 4 | B.1.221 | 0.000284 |
noncoding | 29834 | T29834A | T | A | 4 | 4 | C.37 | 0.000464 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | C.37.1 | 0.010471 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | P.1.16 | 0.001496 |
noncoding | 29834 | T29834C | T | C | 4 | 4 | P.1.17 | 0.000647 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | AY.103 | 0.000019 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.106 | 0.001005 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | AY.23 | 0.000209 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | AY.3 | 0.00003 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | AY.36 | 0.000445 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.42 | 0.000121 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | AY.44 | 0.000018 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | AY.44 | 0.000018 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.46 | 0.000312 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | AY.85 | 0.001282 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | B.1.1.218 | 0.023077 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | B.1.1.317 | 0.001235 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | B.1.1.448 | 0.006098 |
noncoding | 29834 | T29834G | T | G | 3 | 3 | B.1.1.519 | 0.000119 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | B.1.160 | 0.000094 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | B.1.177 | 0.00004 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29834 | T29834A | T | A | 3 | 3 | B.1.258 | 0.0002 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | B.1.258 | 0.0002 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | B.1.429 | 0.000071 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | B.6.6 | 0.002667 |
noncoding | 29834 | T29834C | T | C | 3 | 3 | P.1.14 | 0.000143 |
noncoding | 29834 | T29834- | T | - | 3 | 3 | P.1.17 | 0.000485 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | A | 0.000774 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | A.1 | 0.000564 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | A.2.5 | 0.000998 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | AY.103 | 0.000012 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.113 | 0.000285 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.37 | 0.000632 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | AY.39 | 0.000049 |
noncoding | 29834 | T29834G | T | G | 2 | 2 | AY.4 | 0.000003 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | AY.4.2 | 0.000043 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | AY.42 | 0.00008 |
noncoding | 29834 | T29834G | T | G | 2 | 2 | AY.43 | 0.000009 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | AZ.2 | 0.001642 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B | 0.000256 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.1.10 | 0.00223 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.1.166 | 0.066667 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.1.263 | 0.003115 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.1.317 | 0.000823 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.1.413 | 0.013793 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.1.46 | 0.008734 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.1.519 | 0.000079 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.111 | 0.00235 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.177.86 | 0.000367 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.210 | 0.004264 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29834 | T29834G | T | G | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.349 | 0.00143 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.351 | 0.000059 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | B.1.427 | 0.000101 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.526 | 0.000047 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.526 | 0.000047 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.561 | 0.000794 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.568 | 0.002222 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.576 | 0.001813 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | B.1.619 | 0.001742 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | C.36 | 0.001821 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | P.1.1 | 0.000635 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 29834 | T29834- | T | - | 2 | 2 | P.2 | 0.000373 |
noncoding | 29834 | T29834A | T | A | 2 | 2 | Q.1 | 0.000253 |
noncoding | 29834 | T29834C | T | C | 2 | 2 | Q.1 | 0.000253 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | 0.055556 | |
noncoding | 29834 | T29834C | T | C | 1 | 1 | A.2 | 0.000662 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29834 | T29834R | T | R | 1 | 1 | All | 0 |
noncoding | 29834 | T29834H | T | H | 1 | 1 | All | 0 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.101 | 0.00049 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | AY.103 | 0.000006 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.116 | 0.000287 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | AY.3 | 0.00001 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.39 | 0.000025 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.46.4 | 0.000165 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | AY.5 | 0.000021 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.5 | 0.000021 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.60 | 0.000938 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.73 | 0.000665 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.74 | 0.000116 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29834 | T29834R | T | R | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | AY.90 | 0.000684 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | B | 0.000128 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29834 | T29834H | T | H | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.1 | 0.000327 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.142 | 0.017544 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.158 | 0.012195 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.198 | 0.001468 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.198 | 0.001468 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.236 | 0.006897 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.265 | 0.003155 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | B.1.1.27 | 0.00565 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.363 | 0.005988 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.376 | 0.005952 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.44 | 0.00241 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.442 | 0.018519 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.464 | 0.001473 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.515 | 0.02 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.54 | 0.003021 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.61 | 0.008772 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.1.83 | 0.00271 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.1.99 | 0.02381 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.110.3 | 0.000718 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.157 | 0.002985 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.170 | 0.00431 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.52 | 0.001757 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.73 | 0.000566 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.214.2 | 0.0006 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.235 | 0.002519 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.236 | 0.002053 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | B.1.242 | 0.018868 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.258.11 | 0.000396 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.320 | 0.001245 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.321 | 0.034483 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.326 | 0.007576 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.338 | 0.008621 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.351.1 | 0.038462 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.36.10 | 0.004785 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | B.1.36.18 | 0.00042 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.375 | 0.00082 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.400 | 0.000429 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.466.1 | 0.007194 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.589 | 0.007576 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29834 | T29834G | T | G | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.619.1 | 0.000641 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.627 | 0.00202 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.9 | 0.006173 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | B.1.91 | 0.002075 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | D.2 | 0.000075 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | K.1 | 0.02381 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | N.4 | 0.004255 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29834 | T29834C | T | C | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | P.1.4 | 0.000977 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | P.4 | 0.003802 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | Q.2 | 0.000613 |
noncoding | 29834 | T29834- | T | - | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29834 | T29834A | T | A | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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