CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29834

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29834T29834AnoncodingTA6744667446129834-29834
noncoding29834T29834CnoncodingTC12011201129834-29834
noncoding29834T29834-noncodingT-530530129834-29834
noncoding29834T29834GnoncodingTG7777129834-29834
noncoding29834T29834RnoncodingTR11129834-29834
noncoding29834T29834HnoncodingTH11129834-29834

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29834T29834ATA6744667446All0.0129
noncoding29834T29834ATA4135541355P.10.651506
noncoding29834T29834ATA80398039P.1.140.384273
noncoding29834T29834ATA39863986P.1.170.644775
noncoding29834T29834ATA24232423P.1.100.652924
noncoding29834T29834ATA22292229P.1.70.711686
noncoding29834T29834ATA17901790P.1.10.568615
noncoding29834T29834ATA15141514P.1.150.351766
noncoding29834T29834CTC12011201All0.00023
noncoding29834T29834ATA11771177P.1.120.5697
noncoding29834T29834ATA970970P.1.40.947266
noncoding29834T29834ATA936936P.1.160.350168
noncoding29834T29834ATA680680P.1.130.610961
noncoding29834T29834ATA638638P.1.20.737572
noncoding29834T29834-T-530530All0.000101
noncoding29834T29834CTC496496B.1.1.70.000444
noncoding29834T29834ATA485485P.1.60.94358
noncoding29834T29834-T-310310B.1.1.70.000278
noncoding29834T29834ATA177177P.1.80.84689
noncoding29834T29834ATA174174P.1.90.836538
noncoding29834T29834ATA169169P.1.17.10.147857
noncoding29834T29834ATA149149B.1.1.70.000133
noncoding29834T29834ATA8989P.1.10.10.723577
noncoding29834T29834ATA8585P.1.110.867347
noncoding29834T29834GTG7777All0.000015
noncoding29834T29834CTC6262B.1.617.20.000233
noncoding29834T29834ATA5555B.10.000504
noncoding29834T29834ATA5454B.1.1.390.027523
noncoding29834T29834CTC4747AY.440.000286
noncoding29834T29834CTC4444AY.40.000068
noncoding29834T29834GTG4444B.1.1.70.000039
noncoding29834T29834ATA3939B.1.10.000707
noncoding29834T29834CTC3636AY.250.000217
noncoding29834T29834CTC3232AY.430.000142
noncoding29834T29834CTC3131AY.1180.001942
noncoding29834T29834CTC2727B.10.000247
noncoding29834T29834CTC2626AY.110.034806
noncoding29834T29834ATA2626P.1.30.896552
noncoding29834T29834CTC2323B.1.20.000203
noncoding29834T29834ATA2323P.20.004293
noncoding29834T29834CTC2222B.1.2400.004742
noncoding29834T29834ATA2222P.1.10.20.916667
noncoding29834T29834CTC2121B.1.1770.000277
noncoding29834T29834CTC2020P.10.000315
noncoding29834T29834CTC1818AY.330.001202
noncoding29834T29834-T-1717B.1.617.20.000064
noncoding29834T29834CTC1313AY.1020.000345
noncoding29834T29834CTC1313AY.9.20.000477
noncoding29834T29834CTC1313B.1.10.000236
noncoding29834T29834-T-1313B.1.10.000236
noncoding29834T29834-T-1313P.10.000205
noncoding29834T29834CTC1212AY.1030.000075
noncoding29834T29834CTC1212AY.260.00034
noncoding29834T29834ATA1212B.1.617.20.000045
noncoding29834T29834CTC1111AY.230.000767
noncoding29834T29834CTC1111AY.980.000869
noncoding29834T29834ATA1111B.1.1.280.003424
noncoding29834T29834ATA1111P.1.50.846154
noncoding29834T29834-T-99B.1.1.5190.000357
noncoding29834T29834ATA88AY.1190.000282
noncoding29834T29834-T-88AY.40.000012
noncoding29834T29834-T-88B.10.000073
noncoding29834T29834CTC88B.1.1.5190.000318
noncoding29834T29834ATA88B.1.1.5280.038462
noncoding29834T29834CTC77AY.1200.00026
noncoding29834T29834CTC77AY.390.000173
noncoding29834T29834ATA77AY.40.000011
noncoding29834T29834ATA77AY.430.000031
noncoding29834T29834CTC77B.1.3510.000208
noncoding29834T29834CTC66AY.1190.000212
noncoding29834T29834CTC66AY.30.00006
noncoding29834T29834CTC66AY.470.000187
noncoding29834T29834CTC66AY.60.000247
noncoding29834T29834CTC66AY.610.000629
noncoding29834T29834CTC66B.1.5960.000523
noncoding29834T29834GTG66B.1.617.20.000023
noncoding29834T29834-T-55AY.430.000022
noncoding29834T29834-T-55AY.99.20.000461
noncoding29834T29834ATA55B.1.1600.000156
noncoding29834T29834-T-55B.1.20.000044
noncoding29834T29834CTC55B.1.2580.000333
noncoding29834T29834-T-55C.10.011962
noncoding29834T29834CTC55C.370.00058
noncoding29834T29834GTG55P.10.000079
noncoding29834T29834-T-44AY.1020.000106
noncoding29834T29834-T-44AY.250.000024
noncoding29834T29834CTC44AY.4.20.000087
noncoding29834T29834ATA44AY.9.20.000147
noncoding29834T29834ATA44AY.99.20.000369
noncoding29834T29834CTC44B.1.1.1590.018692
noncoding29834T29834CTC44B.1.1.4280.037736
noncoding29834T29834-T-44B.1.1770.000053
noncoding29834T29834-T-44B.1.2210.000284
noncoding29834T29834ATA44C.370.000464
noncoding29834T29834CTC44C.37.10.010471
noncoding29834T29834CTC44P.1.160.001496
noncoding29834T29834CTC44P.1.170.000647
noncoding29834T29834ATA33AY.1030.000019
noncoding29834T29834CTC33AY.1060.001005
noncoding29834T29834ATA33AY.230.000209
noncoding29834T29834-T-33AY.30.00003
noncoding29834T29834-T-33AY.360.000445
noncoding29834T29834CTC33AY.420.000121
noncoding29834T29834-T-33AY.440.000018
noncoding29834T29834ATA33AY.440.000018
noncoding29834T29834CTC33AY.460.000312
noncoding29834T29834CTC33AY.850.001282
noncoding29834T29834-T-33B.1.1.2180.023077
noncoding29834T29834CTC33B.1.1.3170.001235
noncoding29834T29834-T-33B.1.1.4480.006098
noncoding29834T29834GTG33B.1.1.5190.000119
noncoding29834T29834CTC33B.1.1600.000094
noncoding29834T29834ATA33B.1.1770.00004
noncoding29834T29834ATA33B.1.2210.000213
noncoding29834T29834ATA33B.1.2580.0002
noncoding29834T29834-T-33B.1.2580.0002
noncoding29834T29834-T-33B.1.4290.000071
noncoding29834T29834-T-33B.6.60.002667
noncoding29834T29834CTC33P.1.140.000143
noncoding29834T29834-T-33P.1.170.000485
noncoding29834T29834-T-22A0.000774
noncoding29834T29834ATA22A.10.000564
noncoding29834T29834ATA22A.2.50.000998
noncoding29834T29834CTC22AY.1000.000092
noncoding29834T29834-T-22AY.1030.000012
noncoding29834T29834CTC22AY.1130.000285
noncoding29834T29834CTC22AY.200.000078
noncoding29834T29834CTC22AY.370.000632
noncoding29834T29834-T-22AY.390.000049
noncoding29834T29834GTG22AY.40.000003
noncoding29834T29834-T-22AY.4.20.000043
noncoding29834T29834ATA22AY.420.00008
noncoding29834T29834GTG22AY.430.000009
noncoding29834T29834CTC22AY.98.10.000097
noncoding29834T29834-T-22AZ.20.001642
noncoding29834T29834-T-22B0.000256
noncoding29834T29834CTC22B.1.1.100.00223
noncoding29834T29834-T-22B.1.1.1660.066667
noncoding29834T29834CTC22B.1.1.2630.003115
noncoding29834T29834-T-22B.1.1.3060.000877
noncoding29834T29834-T-22B.1.1.3170.000823
noncoding29834T29834-T-22B.1.1.3480.001592
noncoding29834T29834-T-22B.1.1.4130.013793
noncoding29834T29834-T-22B.1.1.460.008734
noncoding29834T29834ATA22B.1.1.5190.000079
noncoding29834T29834CTC22B.1.1110.00235
noncoding29834T29834-T-22B.1.1600.000062
noncoding29834T29834-T-22B.1.177.860.000367
noncoding29834T29834ATA22B.1.20.000018
noncoding29834T29834-T-22B.1.2100.004264
noncoding29834T29834CTC22B.1.2210.000142
noncoding29834T29834GTG22B.1.2430.000139
noncoding29834T29834CTC22B.1.2430.000139
noncoding29834T29834ATA22B.1.3490.00143
noncoding29834T29834-T-22B.1.3510.000059
noncoding29834T29834ATA22B.1.4270.000101
noncoding29834T29834CTC22B.1.4290.000047
noncoding29834T29834-T-22B.1.5260.000047
noncoding29834T29834CTC22B.1.5260.000047
noncoding29834T29834CTC22B.1.5610.000794
noncoding29834T29834CTC22B.1.5680.002222
noncoding29834T29834CTC22B.1.5760.001813
noncoding29834T29834-T-22B.1.5960.000174
noncoding29834T29834CTC22B.1.6190.001742
noncoding29834T29834-T-22B.1.6210.000177
noncoding29834T29834-T-22C.360.001821
noncoding29834T29834-T-22P.1.10.000635
noncoding29834T29834-T-22P.1.140.000096
noncoding29834T29834-T-22P.1.150.000465
noncoding29834T29834-T-22P.1.70.000639
noncoding29834T29834-T-22P.20.000373
noncoding29834T29834ATA22Q.10.000253
noncoding29834T29834CTC22Q.10.000253
noncoding29834T29834ATA110.055556
noncoding29834T29834CTC11A.20.000662
noncoding29834T29834-T-11AD.20.000219
noncoding29834T29834CTC11AD.20.000219
noncoding29834T29834RTR11All0
noncoding29834T29834HTH11All0
noncoding29834T29834-T-11AY.1000.000046
noncoding29834T29834ATA11AY.1000.000046
noncoding29834T29834ATA11AY.1010.00049
noncoding29834T29834ATA11AY.1020.000027
noncoding29834T29834GTG11AY.1030.000006
noncoding29834T29834ATA11AY.1160.000287
noncoding29834T29834ATA11AY.1170.000085
noncoding29834T29834CTC11AY.160.00038
noncoding29834T29834-T-11AY.160.00038
noncoding29834T29834ATA11AY.200.000039
noncoding29834T29834-T-11AY.230.00007
noncoding29834T29834CTC11AY.23.10.000417
noncoding29834T29834GTG11AY.30.00001
noncoding29834T29834-T-11AY.3.10.000085
noncoding29834T29834GTG11AY.370.000316
noncoding29834T29834ATA11AY.390.000025
noncoding29834T29834ATA11AY.39.10.00004
noncoding29834T29834CTC11AY.4.2.10.000149
noncoding29834T29834CTC11AY.4.40.000409
noncoding29834T29834CTC11AY.4.50.000107
noncoding29834T29834-T-11AY.420.00004
noncoding29834T29834GTG11AY.440.000006
noncoding29834T29834CTC11AY.450.000122
noncoding29834T29834CTC11AY.46.30.000934
noncoding29834T29834CTC11AY.46.40.000165
noncoding29834T29834CTC11AY.46.60.000072
noncoding29834T29834GTG11AY.50.000021
noncoding29834T29834ATA11AY.50.000021
noncoding29834T29834GTG11AY.5.30.000337
noncoding29834T29834-T-11AY.5.40.000277
noncoding29834T29834CTC11AY.590.00053
noncoding29834T29834CTC11AY.600.000938
noncoding29834T29834-T-11AY.620.000436
noncoding29834T29834CTC11AY.680.000274
noncoding29834T29834-T-11AY.680.000274
noncoding29834T29834ATA11AY.730.000665
noncoding29834T29834CTC11AY.740.000116
noncoding29834T29834-T-11AY.750.000056
noncoding29834T29834CTC11AY.750.000056
noncoding29834T29834CTC11AY.75.10.00018
noncoding29834T29834ATA11AY.75.10.00018
noncoding29834T29834-T-11AY.75.10.00018
noncoding29834T29834RTR11AY.850.000427
noncoding29834T29834ATA11AY.90.000068
noncoding29834T29834CTC11AY.9.10.000084
noncoding29834T29834ATA11AY.9.10.000084
noncoding29834T29834GTG11AY.900.000684
noncoding29834T29834ATA11AY.950.000761
noncoding29834T29834-T-11AY.950.000761
noncoding29834T29834ATA11AY.980.000079
noncoding29834T29834-T-11AY.98.10.000048
noncoding29834T29834GTG11B0.000128
noncoding29834T29834GTG11B.1.10.000018
noncoding29834T29834HTH11B.1.10.000018
noncoding29834T29834CTC11B.1.1.10.000327
noncoding29834T29834-T-11B.1.1.1390.022727
noncoding29834T29834ATA11B.1.1.1420.017544
noncoding29834T29834CTC11B.1.1.1580.012195
noncoding29834T29834ATA11B.1.1.1740.003378
noncoding29834T29834-T-11B.1.1.1970.037037
noncoding29834T29834-T-11B.1.1.1980.001468
noncoding29834T29834ATA11B.1.1.1980.001468
noncoding29834T29834-T-11B.1.1.2220.000204
noncoding29834T29834-T-11B.1.1.2360.006897
noncoding29834T29834ATA11B.1.1.2650.003155
noncoding29834T29834GTG11B.1.1.270.00565
noncoding29834T29834-T-11B.1.1.2770.000759
noncoding29834T29834ATA11B.1.1.3060.000438
noncoding29834T29834CTC11B.1.1.3060.000438
noncoding29834T29834-T-11B.1.1.3180.000302
noncoding29834T29834CTC11B.1.1.3180.000302
noncoding29834T29834-T-11B.1.1.330.000421
noncoding29834T29834CTC11B.1.1.3480.000796
noncoding29834T29834CTC11B.1.1.3630.005988
noncoding29834T29834CTC11B.1.1.3690.000446
noncoding29834T29834-T-11B.1.1.3720.000689
noncoding29834T29834CTC11B.1.1.3760.005952
noncoding29834T29834ATA11B.1.1.4090.002833
noncoding29834T29834CTC11B.1.1.440.00241
noncoding29834T29834CTC11B.1.1.4420.018519
noncoding29834T29834CTC11B.1.1.4640.001473
noncoding29834T29834-T-11B.1.1.5150.02
noncoding29834T29834-T-11B.1.1.540.003021
noncoding29834T29834CTC11B.1.1.610.008772
noncoding29834T29834CTC11B.1.1.830.00271
noncoding29834T29834-T-11B.1.1.990.02381
noncoding29834T29834CTC11B.1.110.30.000718
noncoding29834T29834ATA11B.1.1570.002985
noncoding29834T29834ATA11B.1.1700.00431
noncoding29834T29834-T-11B.1.177.330.001645
noncoding29834T29834CTC11B.1.177.520.001757
noncoding29834T29834CTC11B.1.177.730.000566
noncoding29834T29834-T-11B.1.177.750.001041
noncoding29834T29834CTC11B.1.177.750.001041
noncoding29834T29834ATA11B.1.177.750.001041
noncoding29834T29834CTC11B.1.177.860.000183
noncoding29834T29834ATA11B.1.177.860.000183
noncoding29834T29834CTC11B.1.1800.05
noncoding29834T29834-T-11B.1.1800.05
noncoding29834T29834CTC11B.1.2100.002132
noncoding29834T29834ATA11B.1.214.20.0006
noncoding29834T29834CTC11B.1.2340.000132
noncoding29834T29834ATA11B.1.2350.002519
noncoding29834T29834CTC11B.1.2360.002053
noncoding29834T29834GTG11B.1.2420.018868
noncoding29834T29834-T-11B.1.2430.00007
noncoding29834T29834CTC11B.1.258.110.000396
noncoding29834T29834ATA11B.1.258.170.000104
noncoding29834T29834CTC11B.1.3200.001245
noncoding29834T29834CTC11B.1.3210.034483
noncoding29834T29834ATA11B.1.3260.007576
noncoding29834T29834CTC11B.1.3380.008621
noncoding29834T29834-T-11B.1.3490.000715
noncoding29834T29834CTC11B.1.3490.000715
noncoding29834T29834ATA11B.1.3510.00003
noncoding29834T29834CTC11B.1.351.10.038462
noncoding29834T29834CTC11B.1.360.000146
noncoding29834T29834ATA11B.1.36.100.004785
noncoding29834T29834GTG11B.1.36.180.00042
noncoding29834T29834ATA11B.1.3750.00082
noncoding29834T29834ATA11B.1.4000.000429
noncoding29834T29834ATA11B.1.4160.001269
noncoding29834T29834-T-11B.1.4270.00005
noncoding29834T29834CTC11B.1.4270.00005
noncoding29834T29834CTC11B.1.466.10.007194
noncoding29834T29834-T-11B.1.4970.000315
noncoding29834T29834CTC11B.1.5750.000303
noncoding29834T29834ATA11B.1.5760.000907
noncoding29834T29834CTC11B.1.5890.007576
noncoding29834T29834ATA11B.1.5960.000087
noncoding29834T29834GTG11B.1.617.10.000129
noncoding29834T29834CTC11B.1.617.10.000129
noncoding29834T29834-T-11B.1.617.10.000129
noncoding29834T29834CTC11B.1.617.30.002985
noncoding29834T29834-T-11B.1.617.30.002985
noncoding29834T29834ATA11B.1.619.10.000641
noncoding29834T29834-T-11B.1.6270.00202
noncoding29834T29834-T-11B.1.6300.005236
noncoding29834T29834ATA11B.1.6300.005236
noncoding29834T29834ATA11B.1.6370.000073
noncoding29834T29834-T-11B.1.6370.000073
noncoding29834T29834ATA11B.1.90.006173
noncoding29834T29834ATA11B.1.910.002075
noncoding29834T29834ATA11C.37.10.002618
noncoding29834T29834CTC11D.20.000075
noncoding29834T29834CTC11K.10.02381
noncoding29834T29834ATA11N.40.004255
noncoding29834T29834CTC11P.1.100.000269
noncoding29834T29834CTC11P.1.20.001156
noncoding29834T29834-T-11P.1.40.000977
noncoding29834T29834ATA11P.40.003802
noncoding29834T29834ATA11Q.20.000613
noncoding29834T29834-T-11Q.30.000145
noncoding29834T29834ATA11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.