CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29805

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29805	A29805-		noncoding	A	-	1353	1353	1	29805-29805
noncoding	29805	A29805G		noncoding	A	G	528	528	1	29805-29805
noncoding	29805	A29805T		noncoding	A	T	193	193	1	29805-29805
noncoding	29805	A29805C		noncoding	A	C	61	61	1	29805-29805
noncoding	29805	A29805D		noncoding	A	D	20	20	1	29805-29805
noncoding	29805	A29805V		noncoding	A	V	7	7	1	29805-29805
noncoding	29805	A29805K		noncoding	A	K	4	4	1	29805-29805
noncoding	29805	A29805H		noncoding	A	H	1	1	1	29805-29805

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29805	A29805-	A	-	1353	1353	All	0.000259
noncoding	29805	A29805-	A	-	1068	1068	B.1.1.7	0.000956
noncoding	29805	A29805G	A	G	528	528	All	0.000101
noncoding	29805	A29805G	A	G	197	197	B.1.505	0.864035
noncoding	29805	A29805T	A	T	193	193	All	0.000037
noncoding	29805	A29805G	A	G	78	78	AY.25	0.000469
noncoding	29805	A29805C	A	C	61	61	All	0.000012
noncoding	29805	A29805G	A	G	60	60	AY.3	0.000597
noncoding	29805	A29805T	A	T	41	41	AY.25	0.000247
noncoding	29805	A29805T	A	T	37	37	B.1.617.2	0.000139
noncoding	29805	A29805G	A	G	36	36	B.1.617.2	0.000136
noncoding	29805	A29805-	A	-	35	35	B.1.617.2	0.000132
noncoding	29805	A29805G	A	G	32	32	B.1.1.7	0.000029
noncoding	29805	A29805G	A	G	24	24	AY.44	0.000146
noncoding	29805	A29805C	A	C	22	22	B.1.1.7	0.00002
noncoding	29805	A29805D	A	D	20	20	All	0.000004
noncoding	29805	A29805T	A	T	20	20	AY.3	0.000199
noncoding	29805	A29805-	A	-	15	15	B.1.1	0.000272
noncoding	29805	A29805T	A	T	14	14	B.1.1.7	0.000013
noncoding	29805	A29805-	A	-	12	12	B.1	0.00011
noncoding	29805	A29805-	A	-	12	12	B.1.351	0.000357
noncoding	29805	A29805G	A	G	11	11	AY.103	0.000068
noncoding	29805	A29805-	A	-	11	11	B.1.258	0.000732
noncoding	29805	A29805-	A	-	11	11	P.1	0.000173
noncoding	29805	A29805-	A	-	8	8	AY.25	0.000048
noncoding	29805	A29805D	A	D	8	8	AY.3	0.00008
noncoding	29805	A29805G	A	G	8	8	AY.75	0.000448
noncoding	29805	A29805-	A	-	8	8	B.1.2	0.00007
noncoding	29805	A29805V	A	V	7	7	All	0.000001
noncoding	29805	A29805T	A	T	7	7	AY.103	0.000043
noncoding	29805	A29805D	A	D	7	7	AY.25	0.000042
noncoding	29805	A29805G	A	G	7	7	AY.26	0.000198
noncoding	29805	A29805G	A	G	7	7	AY.4	0.000011
noncoding	29805	A29805G	A	G	6	6	AY.100	0.000276
noncoding	29805	A29805T	A	T	6	6	AY.44	0.000037
noncoding	29805	A29805G	A	G	6	6	B.1	0.000055
noncoding	29805	A29805G	A	G	6	6	B.1.1	0.000109
noncoding	29805	A29805-	A	-	6	6	B.1.1.317	0.00247
noncoding	29805	A29805-	A	-	6	6	B.1.1.519	0.000238
noncoding	29805	A29805-	A	-	6	6	B.1.177.86	0.001101
noncoding	29805	A29805-	A	-	6	6	C.37.1	0.015707
noncoding	29805	A29805-	A	-	6	6	P.1.16	0.002245
noncoding	29805	A29805-	A	-	6	6	P.1.17	0.000971
noncoding	29805	A29805-	A	-	5	5	AY.103	0.000031
noncoding	29805	A29805-	A	-	5	5	AY.3	0.00005
noncoding	29805	A29805-	A	-	5	5	AY.39	0.000124
noncoding	29805	A29805T	A	T	5	5	AY.43	0.000022
noncoding	29805	A29805G	A	G	5	5	AY.47	0.000156
noncoding	29805	A29805-	A	-	5	5	AY.99.2	0.000461
noncoding	29805	A29805-	A	-	5	5	B.1.160	0.000156
noncoding	29805	A29805-	A	-	5	5	B.1.221	0.000355
noncoding	29805	A29805C	A	C	5	5	B.1.617.2	0.000019
noncoding	29805	A29805-	A	-	5	5	C.1	0.011962
noncoding	29805	A29805G	A	G	5	5	P.1	0.000079
noncoding	29805	A29805K	A	K	4	4	All	0.000001
noncoding	29805	A29805C	A	C	4	4	AY.25	0.000024
noncoding	29805	A29805T	A	T	4	4	AY.26	0.000113
noncoding	29805	A29805G	A	G	4	4	AY.39.1	0.000158
noncoding	29805	A29805G	A	G	4	4	AY.46.4	0.000658
noncoding	29805	A29805T	A	T	4	4	B.1.1	0.000073
noncoding	29805	A29805C	A	C	4	4	B.1.1.519	0.000159
noncoding	29805	A29805T	A	T	4	4	B.1.2	0.000035
noncoding	29805	A29805T	A	T	4	4	B.1.429	0.000094
noncoding	29805	A29805-	A	-	3	3	AY.109	0.002219
noncoding	29805	A29805G	A	G	3	3	AY.14	0.000264
noncoding	29805	A29805V	A	V	3	3	AY.3	0.00003
noncoding	29805	A29805G	A	G	3	3	AY.3.1	0.000256
noncoding	29805	A29805-	A	-	3	3	AY.4	0.000005
noncoding	29805	A29805-	A	-	3	3	AY.43	0.000013
noncoding	29805	A29805-	A	-	3	3	AY.44	0.000018
noncoding	29805	A29805T	A	T	3	3	AY.46.4	0.000494
noncoding	29805	A29805T	A	T	3	3	AY.75	0.000168
noncoding	29805	A29805-	A	-	3	3	B.1.1.448	0.006098
noncoding	29805	A29805-	A	-	3	3	B.1.1.46	0.0131
noncoding	29805	A29805-	A	-	3	3	B.1.177	0.00004
noncoding	29805	A29805-	A	-	3	3	B.1.210	0.006397
noncoding	29805	A29805T	A	T	3	3	B.1.427	0.000151
noncoding	29805	A29805-	A	-	3	3	B.1.525	0.000339
noncoding	29805	A29805-	A	-	3	3	B.1.526	0.000071
noncoding	29805	A29805G	A	G	3	3	B.1.575.1	0.007317
noncoding	29805	A29805-	A	-	3	3	B.1.619	0.002613
noncoding	29805	A29805T	A	T	3	3	P.1	0.000047
noncoding	29805	A29805C	A	C	3	3	P.1	0.000047
noncoding	29805	A29805-	A	-	3	3	P.1.1	0.000953
noncoding	29805	A29805-	A	-	3	3	P.2	0.00056
noncoding	29805	A29805-	A	-	3	3	Q.1	0.000379
noncoding	29805	A29805-	A	-	2	2	A	0.000774
noncoding	29805	A29805C	A	C	2	2	AY.103	0.000012
noncoding	29805	A29805T	A	T	2	2	AY.113	0.000285
noncoding	29805	A29805-	A	-	2	2	AY.26	0.000057
noncoding	29805	A29805T	A	T	2	2	AY.29	0.000032
noncoding	29805	A29805C	A	C	2	2	AY.3	0.00002
noncoding	29805	A29805G	A	G	2	2	AY.39	0.000049
noncoding	29805	A29805T	A	T	2	2	AY.39	0.000049
noncoding	29805	A29805T	A	T	2	2	AY.41	0.000588
noncoding	29805	A29805D	A	D	2	2	AY.44	0.000012
noncoding	29805	A29805C	A	C	2	2	AY.75	0.000112
noncoding	29805	A29805-	A	-	2	2	AY.75.1	0.000361
noncoding	29805	A29805-	A	-	2	2	AY.95	0.001522
noncoding	29805	A29805T	A	T	2	2	AY.98.1	0.000097
noncoding	29805	A29805C	A	C	2	2	AY.99.2	0.000184
noncoding	29805	A29805-	A	-	2	2	B	0.000256
noncoding	29805	A29805C	A	C	2	2	B.1	0.000018
noncoding	29805	A29805-	A	-	2	2	B.1.1.166	0.066667
noncoding	29805	A29805-	A	-	2	2	B.1.1.348	0.001592
noncoding	29805	A29805T	A	T	2	2	B.1.1.519	0.000079
noncoding	29805	A29805-	A	-	2	2	B.1.243	0.000139
noncoding	29805	A29805-	A	-	2	2	B.1.429	0.000047
noncoding	29805	A29805D	A	D	2	2	B.1.617.2	0.000008
noncoding	29805	A29805-	A	-	2	2	B.1.621	0.000177
noncoding	29805	A29805-	A	-	2	2	P.1.15	0.000465
noncoding	29805	A29805-	A	-	2	2	P.1.7	0.000639
noncoding	29805	A29805G	A	G	2	2	P.1.7	0.000639
noncoding	29805	A29805-	A	-	1	1	AD.2	0.000219
noncoding	29805	A29805H	A	H	1	1	All	0
noncoding	29805	A29805T	A	T	1	1	AY.102	0.000027
noncoding	29805	A29805-	A	-	1	1	AY.102	0.000027
noncoding	29805	A29805C	A	C	1	1	AY.102	0.000027
noncoding	29805	A29805T	A	T	1	1	AY.105	0.000643
noncoding	29805	A29805G	A	G	1	1	AY.111	0.000183
noncoding	29805	A29805V	A	V	1	1	AY.119	0.000035
noncoding	29805	A29805T	A	T	1	1	AY.120.1	0.000321
noncoding	29805	A29805-	A	-	1	1	AY.14	0.000088
noncoding	29805	A29805G	A	G	1	1	AY.20	0.000039
noncoding	29805	A29805G	A	G	1	1	AY.23	0.00007
noncoding	29805	A29805-	A	-	1	1	AY.23	0.00007
noncoding	29805	A29805C	A	C	1	1	AY.23	0.00007
noncoding	29805	A29805V	A	V	1	1	AY.25	0.000006
noncoding	29805	A29805K	A	K	1	1	AY.25	0.000006
noncoding	29805	A29805H	A	H	1	1	AY.3	0.00001
noncoding	29805	A29805C	A	C	1	1	AY.3.1	0.000085
noncoding	29805	A29805-	A	-	1	1	AY.3.1	0.000085
noncoding	29805	A29805T	A	T	1	1	AY.3.1	0.000085
noncoding	29805	A29805-	A	-	1	1	AY.38	0.000499
noncoding	29805	A29805T	A	T	1	1	AY.39.1	0.00004
noncoding	29805	A29805C	A	C	1	1	AY.39.1	0.00004
noncoding	29805	A29805T	A	T	1	1	AY.4	0.000002
noncoding	29805	A29805-	A	-	1	1	AY.42	0.00004
noncoding	29805	A29805G	A	G	1	1	AY.43	0.000004
noncoding	29805	A29805K	A	K	1	1	AY.44	0.000006
noncoding	29805	A29805V	A	V	1	1	AY.44	0.000006
noncoding	29805	A29805C	A	C	1	1	AY.44	0.000006
noncoding	29805	A29805G	A	G	1	1	AY.46.2	0.000635
noncoding	29805	A29805K	A	K	1	1	AY.46.2	0.000635
noncoding	29805	A29805T	A	T	1	1	AY.46.6	0.000072
noncoding	29805	A29805G	A	G	1	1	AY.52	0.000814
noncoding	29805	A29805G	A	G	1	1	AY.54	0.000095
noncoding	29805	A29805-	A	-	1	1	AY.61	0.000105
noncoding	29805	A29805G	A	G	1	1	AY.61	0.000105
noncoding	29805	A29805C	A	C	1	1	AY.73	0.000665
noncoding	29805	A29805-	A	-	1	1	AY.75	0.000056
noncoding	29805	A29805D	A	D	1	1	AY.75	0.000056
noncoding	29805	A29805G	A	G	1	1	AY.75.1	0.00018
noncoding	29805	A29805-	A	-	1	1	AY.85	0.000427
noncoding	29805	A29805C	A	C	1	1	AY.9	0.000068
noncoding	29805	A29805T	A	T	1	1	AY.92	0.000287
noncoding	29805	A29805T	A	T	1	1	AY.95	0.000761
noncoding	29805	A29805-	A	-	1	1	AY.98	0.000079
noncoding	29805	A29805T	A	T	1	1	AY.98	0.000079
noncoding	29805	A29805-	A	-	1	1	AY.98.1	0.000048
noncoding	29805	A29805-	A	-	1	1	AZ.2	0.000821
noncoding	29805	A29805T	A	T	1	1	B	0.000128
noncoding	29805	A29805G	A	G	1	1	B	0.000128
noncoding	29805	A29805T	A	T	1	1	B.1	0.000009
noncoding	29805	A29805-	A	-	1	1	B.1.1.139	0.022727
noncoding	29805	A29805T	A	T	1	1	B.1.1.192	0.002309
noncoding	29805	A29805-	A	-	1	1	B.1.1.197	0.037037
noncoding	29805	A29805T	A	T	1	1	B.1.1.216	0.00089
noncoding	29805	A29805-	A	-	1	1	B.1.1.218	0.007692
noncoding	29805	A29805-	A	-	1	1	B.1.1.222	0.000204
noncoding	29805	A29805G	A	G	1	1	B.1.1.27	0.00565
noncoding	29805	A29805-	A	-	1	1	B.1.1.277	0.000759
noncoding	29805	A29805-	A	-	1	1	B.1.1.306	0.000438
noncoding	29805	A29805G	A	G	1	1	B.1.1.306	0.000438
noncoding	29805	A29805G	A	G	1	1	B.1.1.318	0.000302
noncoding	29805	A29805-	A	-	1	1	B.1.1.33	0.000421
noncoding	29805	A29805-	A	-	1	1	B.1.1.372	0.000689
noncoding	29805	A29805-	A	-	1	1	B.1.1.413	0.006897
noncoding	29805	A29805-	A	-	1	1	B.1.1.528	0.004808
noncoding	29805	A29805-	A	-	1	1	B.1.1.54	0.003021
noncoding	29805	A29805-	A	-	1	1	B.1.1.99	0.02381
noncoding	29805	A29805C	A	C	1	1	B.1.160	0.000031
noncoding	29805	A29805T	A	T	1	1	B.1.177	0.000013
noncoding	29805	A29805G	A	G	1	1	B.1.177	0.000013
noncoding	29805	A29805-	A	-	1	1	B.1.177.33	0.001645
noncoding	29805	A29805T	A	T	1	1	B.1.177.73	0.000566
noncoding	29805	A29805T	A	T	1	1	B.1.232	0.000537
noncoding	29805	A29805T	A	T	1	1	B.1.240	0.000216
noncoding	29805	A29805T	A	T	1	1	B.1.247	0.014925
noncoding	29805	A29805C	A	C	1	1	B.1.258.11	0.000396
noncoding	29805	A29805-	A	-	1	1	B.1.258.17	0.000104
noncoding	29805	A29805T	A	T	1	1	B.1.351	0.00003
noncoding	29805	A29805-	A	-	1	1	B.1.351.2	0.000303
noncoding	29805	A29805T	A	T	1	1	B.1.36.24	0.006173
noncoding	29805	A29805-	A	-	1	1	B.1.36.8	0.001
noncoding	29805	A29805-	A	-	1	1	B.1.369	0.000285
noncoding	29805	A29805C	A	C	1	1	B.1.427	0.00005
noncoding	29805	A29805G	A	G	1	1	B.1.429	0.000024
noncoding	29805	A29805T	A	T	1	1	B.1.497	0.000315
noncoding	29805	A29805G	A	G	1	1	B.1.551	0.00129
noncoding	29805	A29805T	A	T	1	1	B.1.567	0.003333
noncoding	29805	A29805G	A	G	1	1	B.1.617.1	0.000129
noncoding	29805	A29805K	A	K	1	1	B.1.617.2	0.000004
noncoding	29805	A29805V	A	V	1	1	B.1.617.2	0.000004
noncoding	29805	A29805-	A	-	1	1	B.1.617.3	0.002985
noncoding	29805	A29805C	A	C	1	1	B.1.621	0.000089
noncoding	29805	A29805-	A	-	1	1	B.1.627	0.00202
noncoding	29805	A29805G	A	G	1	1	B.1.630	0.005236
noncoding	29805	A29805-	A	-	1	1	B.1.630	0.005236
noncoding	29805	A29805-	A	-	1	1	B.1.637	0.000073
noncoding	29805	A29805-	A	-	1	1	C.36	0.000911
noncoding	29805	A29805C	A	C	1	1	P.1.16	0.000374
noncoding	29805	A29805C	A	C	1	1	Q.1	0.000126
noncoding	29805	A29805-	A	-	1	1	Q.2	0.000613
noncoding	29805	A29805G	A	G	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.