CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29791

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29791T29791-noncodingT-16811681129791-29791
noncoding29791T29791CnoncodingTC15951595129791-29791
noncoding29791T29791AnoncodingTA232232129791-29791
noncoding29791T29791GnoncodingTG2727129791-29791
noncoding29791T29791DnoncodingTD11129791-29791
noncoding29791T29791MnoncodingTM11129791-29791
noncoding29791T29791BnoncodingTB11129791-29791

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29791T29791-T-16811681All0.000322
noncoding29791T29791CTC15951595All0.000305
noncoding29791T29791-T-12741274B.1.1.70.001141
noncoding29791T29791CTC375375B.1.177.150.236593
noncoding29791T29791CTC246246AY.430.00109
noncoding29791T29791ATA232232All0.000044
noncoding29791T29791CTC173173B.1.617.20.000651
noncoding29791T29791CTC130130AA.21
noncoding29791T29791ATA115115AY.430.00051
noncoding29791T29791CTC110110AA.41
noncoding29791T29791CTC9191B.1.1.70.000081
noncoding29791T29791CTC6262AA.51
noncoding29791T29791CTC6262AA.61
noncoding29791T29791-T-4545B.1.617.20.000169
noncoding29791T29791CTC3737AA.31
noncoding29791T29791CTC3333AY.40.000051
noncoding29791T29791GTG2727All0.000005
noncoding29791T29791ATA2727AY.1100.003043
noncoding29791T29791ATA2323AY.9.20.000845
noncoding29791T29791CTC2121AY.440.000128
noncoding29791T29791-T-1919AY.920.005458
noncoding29791T29791ATA1919B.1.617.20.000072
noncoding29791T29791-T-1717AY.30.000169
noncoding29791T29791CTC1717AY.390.00042
noncoding29791T29791CTC1313AY.1190.000459
noncoding29791T29791-T-1313B.1.10.000236
noncoding29791T29791CTC1313B.1.1770.000171
noncoding29791T29791CTC1212AY.1110.002198
noncoding29791T29791CTC1212AY.340.001164
noncoding29791T29791ATA1212B.1.1.70.000011
noncoding29791T29791-T-1212B.1.3510.000357
noncoding29791T29791-T-1111B.1.20.000097
noncoding29791T29791-T-1111B.1.2580.000732
noncoding29791T29791CTC1111B.1.3510.000327
noncoding29791T29791-T-1010AY.250.00006
noncoding29791T29791CTC1010B.1.20.000088
noncoding29791T29791-T-1010P.10.000158
noncoding29791T29791CTC99AY.260.000255
noncoding29791T29791-T-99B.10.000082
noncoding29791T29791-T-88AY.40.000012
noncoding29791T29791-T-88AY.980.000632
noncoding29791T29791-T-88B.1.1.5190.000318
noncoding29791T29791GTG88B.1.1.70.000007
noncoding29791T29791-T-88B.1.177.860.001468
noncoding29791T29791CTC88P.10.000126
noncoding29791T29791-T-88P.1.160.002993
noncoding29791T29791CTC77AY.1030.000043
noncoding29791T29791CTC77AY.250.000042
noncoding29791T29791-T-77AY.290.00011
noncoding29791T29791-T-77AY.430.000031
noncoding29791T29791CTC77B.10.000064
noncoding29791T29791ATA77B.1.5260.000165
noncoding29791T29791CTC66AA.10.043478
noncoding29791T29791-T-66AY.440.000037
noncoding29791T29791CTC66AY.9.20.00022
noncoding29791T29791-T-66B.1.1.3170.00247
noncoding29791T29791CTC66B.1.1.5190.000238
noncoding29791T29791-T-66B.1.1600.000187
noncoding29791T29791-T-66B.1.2210.000426
noncoding29791T29791-T-66C.37.10.015707
noncoding29791T29791GTG66P.10.000095
noncoding29791T29791-T-66P.1.170.000971
noncoding29791T29791-T-55AY.1030.000031
noncoding29791T29791-T-55AY.1190.000177
noncoding29791T29791-T-55AY.390.000124
noncoding29791T29791CTC55AY.980.000395
noncoding29791T29791-T-55AY.99.20.000461
noncoding29791T29791ATA55B.10.000046
noncoding29791T29791CTC55B.1.1.1130.034965
noncoding29791T29791GTG55B.1.20.000044
noncoding29791T29791-T-55B.1.2430.000348
noncoding29791T29791-T-55B.1.5250.000566
noncoding29791T29791-T-55B.1.6190.004355
noncoding29791T29791-T-55C.10.011962
noncoding29791T29791-T-55Q.10.000632
noncoding29791T29791CTC44AY.460.000416
noncoding29791T29791CTC44AY.5.40.001107
noncoding29791T29791CTC44B.1.10.000073
noncoding29791T29791CTC44B.1.1600.000125
noncoding29791T29791-T-44B.1.4290.000094
noncoding29791T29791CTC33AY.1020.00008
noncoding29791T29791-T-33AY.1090.002219
noncoding29791T29791CTC33AY.1130.000427
noncoding29791T29791-T-33AY.230.000209
noncoding29791T29791CTC33AY.290.000047
noncoding29791T29791ATA33AY.740.000347
noncoding29791T29791-T-33B.1.1.460.0131
noncoding29791T29791-T-33B.1.1770.00004
noncoding29791T29791ATA33B.1.4270.000151
noncoding29791T29791CTC33B.1.4270.000151
noncoding29791T29791CTC33B.1.4290.000071
noncoding29791T29791CTC33C.370.000348
noncoding29791T29791-T-33P.20.00056
noncoding29791T29791-T-22A0.000774
noncoding29791T29791CTC22A.2.50.000998
noncoding29791T29791-T-22AY.1000.000092
noncoding29791T29791CTC22AY.1060.00067
noncoding29791T29791-T-22AY.1170.000169
noncoding29791T29791-T-22AY.140.000176
noncoding29791T29791CTC22AY.200.000078
noncoding29791T29791-T-22AY.260.000057
noncoding29791T29791CTC22AY.300.000791
noncoding29791T29791CTC22AY.380.000999
noncoding29791T29791ATA22AY.440.000012
noncoding29791T29791-T-22AY.46.20.001271
noncoding29791T29791-T-22AY.470.000062
noncoding29791T29791-T-22AY.50.000041
noncoding29791T29791-T-22AY.5.30.000675
noncoding29791T29791CTC22AY.530.000575
noncoding29791T29791-T-22AY.540.000191
noncoding29791T29791-T-22AY.610.00021
noncoding29791T29791CTC22AY.680.000547
noncoding29791T29791CTC22AY.750.000112
noncoding29791T29791-T-22AY.75.10.000361
noncoding29791T29791-T-22AY.840.000875
noncoding29791T29791CTC22AY.90.000135
noncoding29791T29791-T-22AY.9.20.000073
noncoding29791T29791-T-22AY.950.001522
noncoding29791T29791-T-22B0.000256
noncoding29791T29791CTC22B0.000256
noncoding29791T29791GTG22B.10.000018
noncoding29791T29791-T-22B.1.1.1660.066667
noncoding29791T29791-T-22B.1.1.3480.001592
noncoding29791T29791CTC22B.1.1.4340.000697
noncoding29791T29791ATA22B.1.1.5190.000079
noncoding29791T29791-T-22B.1.1.5230.003125
noncoding29791T29791CTC22B.1.177.310.022989
noncoding29791T29791CTC22B.1.177.860.000367
noncoding29791T29791-T-22B.1.2100.004264
noncoding29791T29791CTC22B.1.2580.000133
noncoding29791T29791GTG22B.1.4290.000047
noncoding29791T29791-T-22B.1.6210.000177
noncoding29791T29791-T-22B.390.004662
noncoding29791T29791ATA22P.10.000032
noncoding29791T29791-T-22P.1.10.000635
noncoding29791T29791-T-22P.1.150.000465
noncoding29791T29791CTC22P.1.170.000324
noncoding29791T29791-T-22P.1.70.000639
noncoding29791T29791CTC22P.1.70.000639
noncoding29791T29791ATA110.055556
noncoding29791T29791CTC11AD.20.000219
noncoding29791T29791-T-11AD.20.000219
noncoding29791T29791MTM11All0
noncoding29791T29791DTD11All0
noncoding29791T29791BTB11All0
noncoding29791T29791CTC11AY.1000.000046
noncoding29791T29791-T-11AY.1020.000027
noncoding29791T29791GTG11AY.1130.000142
noncoding29791T29791-T-11AY.1200.000037
noncoding29791T29791CTC11AY.1200.000037
noncoding29791T29791-T-11AY.120.10.000321
noncoding29791T29791CTC11AY.1210.000135
noncoding29791T29791CTC11AY.130.000161
noncoding29791T29791-T-11AY.200.000039
noncoding29791T29791ATA11AY.230.00007
noncoding29791T29791CTC11AY.230.00007
noncoding29791T29791ATA11AY.260.000028
noncoding29791T29791CTC11AY.270.000065
noncoding29791T29791-T-11AY.3.10.000085
noncoding29791T29791CTC11AY.320.000532
noncoding29791T29791CTC11AY.330.000067
noncoding29791T29791-T-11AY.380.000499
noncoding29791T29791-T-11AY.39.10.00004
noncoding29791T29791CTC11AY.400.000964
noncoding29791T29791-T-11AY.400.000964
noncoding29791T29791-T-11AY.420.00004
noncoding29791T29791GTG11AY.440.000006
noncoding29791T29791-T-11AY.450.000122
noncoding29791T29791-T-11AY.46.30.000934
noncoding29791T29791CTC11AY.46.60.000072
noncoding29791T29791CTC11AY.510.000909
noncoding29791T29791CTC11AY.590.00053
noncoding29791T29791GTG11AY.590.00053
noncoding29791T29791ATA11AY.620.000436
noncoding29791T29791CTC11AY.670.000464
noncoding29791T29791-T-11AY.810.001992
noncoding29791T29791-T-11AY.850.000427
noncoding29791T29791CTC11AY.9.10.000084
noncoding29791T29791-T-11AY.9.10.000084
noncoding29791T29791CTC11AY.900.000684
noncoding29791T29791-T-11AY.910.00073
noncoding29791T29791ATA11AY.940.000443
noncoding29791T29791-T-11AY.98.10.000048
noncoding29791T29791CTC11AY.98.10.000048
noncoding29791T29791ATA11B0.000128
noncoding29791T29791-T-11B.1.1.1700.001247
noncoding29791T29791-T-11B.1.1.1970.037037
noncoding29791T29791CTC11B.1.1.2140.000055
noncoding29791T29791-T-11B.1.1.2180.007692
noncoding29791T29791CTC11B.1.1.2220.000204
noncoding29791T29791-T-11B.1.1.2220.000204
noncoding29791T29791-T-11B.1.1.2770.000759
noncoding29791T29791CTC11B.1.1.280.000311
noncoding29791T29791-T-11B.1.1.280.000311
noncoding29791T29791-T-11B.1.1.3060.000438
noncoding29791T29791-T-11B.1.1.3110.000358
noncoding29791T29791-T-11B.1.1.330.000421
noncoding29791T29791-T-11B.1.1.3720.000689
noncoding29791T29791-T-11B.1.1.4130.006897
noncoding29791T29791-T-11B.1.1.4480.002033
noncoding29791T29791CTC11B.1.1.490.017544
noncoding29791T29791MTM11B.1.1.5190.00004
noncoding29791T29791CTC11B.1.1.5260.003546
noncoding29791T29791-T-11B.1.1.5280.004808
noncoding29791T29791-T-11B.1.1.540.003021
noncoding29791T29791DTD11B.1.1.70.000001
noncoding29791T29791-T-11B.1.1.990.02381
noncoding29791T29791-T-11B.1.160.330.004425
noncoding29791T29791CTC11B.1.177.170.000821
noncoding29791T29791-T-11B.1.177.330.001645
noncoding29791T29791CTC11B.1.177.330.001645
noncoding29791T29791CTC11B.1.177.540.000606
noncoding29791T29791CTC11B.1.177.60.000977
noncoding29791T29791-T-11B.1.177.630.002703
noncoding29791T29791CTC11B.1.177.650.000665
noncoding29791T29791ATA11B.1.20.000009
noncoding29791T29791-T-11B.1.258.170.000104
noncoding29791T29791CTC11B.1.30.002618
noncoding29791T29791-T-11B.1.351.20.000303
noncoding29791T29791CTC11B.1.36.160.001425
noncoding29791T29791CTC11B.1.36.290.000517
noncoding29791T29791-T-11B.1.36.310.001751
noncoding29791T29791-T-11B.1.36.80.001
noncoding29791T29791CTC11B.1.4020.009804
noncoding29791T29791ATA11B.1.4160.001269
noncoding29791T29791ATA11B.1.4290.000024
noncoding29791T29791-T-11B.1.466.10.007194
noncoding29791T29791GTG11B.1.4970.000315
noncoding29791T29791ATA11B.1.4970.000315
noncoding29791T29791-T-11B.1.5260.000024
noncoding29791T29791CTC11B.1.5260.000024
noncoding29791T29791CTC11B.1.5960.000087
noncoding29791T29791-T-11B.1.617.30.002985
noncoding29791T29791-T-11B.1.6270.00202
noncoding29791T29791-T-11B.1.6300.005236
noncoding29791T29791-T-11C.360.000911
noncoding29791T29791ATA11C.37.10.002618
noncoding29791T29791CTC11C.37.10.002618
noncoding29791T29791CTC11N.50.001767
noncoding29791T29791BTB11P.10.000016
noncoding29791T29791-T-11Q.20.000613
noncoding29791T29791ATA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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