CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29784

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29784C29784TnoncodingCT60356035129784-29784
noncoding29784C29784-noncodingC-17771777129784-29784
noncoding29784C29784AnoncodingCA140140129784-29784
noncoding29784C29784GnoncodingCG3838129784-29784

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29784C29784TCT60356035All0.001154
noncoding29784C29784-C-17771777All0.00034
noncoding29784C29784-C-13191319B.1.1.70.001181
noncoding29784C29784TCT11491149B.1.1.70.001029
noncoding29784C29784TCT10411041B.1.1.2910.772829
noncoding29784C29784TCT542542B.10.004964
noncoding29784C29784TCT439439B.1.1270.964835
noncoding29784C29784TCT345345B.1.20.003038
noncoding29784C29784TCT261261B.1.617.20.000983
noncoding29784C29784TCT245245B.1.1.2630.38162
noncoding29784C29784TCT176176B.1.10.003193
noncoding29784C29784TCT147147B.1.4270.007423
noncoding29784C29784ACA140140All0.000027
noncoding29784C29784TCT109109AY.40.00017
noncoding29784C29784TCT100100B.1.3510.002973
noncoding29784C29784TCT8686B.1.1.2140.004769
noncoding29784C29784TCT8282AY.430.000363
noncoding29784C29784TCT7575B.1.2400.016167
noncoding29784C29784TCT7171AY.1020.001882
noncoding29784C29784TCT7070B.1.1770.000922
noncoding29784C29784TCT6767B.1.6370.004896
noncoding29784C29784TCT6464AY.440.00039
noncoding29784C29784TCT6363P.10.000993
noncoding29784C29784TCT5353AY.730.035263
noncoding29784C29784-C-4848B.1.617.20.000181
noncoding29784C29784TCT4646AY.250.000277
noncoding29784C29784TCT4545AY.540.004291
noncoding29784C29784GCG3838All0.000007
noncoding29784C29784TCT3737B.1.1.2900.672727
noncoding29784C29784ACA3737B.1.1.70.000033
noncoding29784C29784TCT3232B.1.4160.040609
noncoding29784C29784TCT2929B.1.1.3480.023089
noncoding29784C29784TCT2626AA.80.577778
noncoding29784C29784TCT2323AY.1030.000143
noncoding29784C29784TCT2323B.1.1.700.007844
noncoding29784C29784TCT2222B.1.258.110.00872
noncoding29784C29784TCT2222B.1.4290.000518
noncoding29784C29784-C-2121AY.440.000128
noncoding29784C29784TCT2121B.1.1600.000655
noncoding29784C29784-C-1919AY.920.005458
noncoding29784C29784TCT1919C.370.002205
noncoding29784C29784GCG1818B.1.1.70.000016
noncoding29784C29784ACA1818B.1.617.20.000068
noncoding29784C29784TCT1717B.1.1.2220.003468
noncoding29784C29784TCT1717B.1.6210.001505
noncoding29784C29784ACA1515AY.1020.000398
noncoding29784C29784-C-1414AY.250.000084
noncoding29784C29784TCT1414B.1.1.2840.001504
noncoding29784C29784TCT1414B.1.360.002043
noncoding29784C29784TCT1313AY.390.000321
noncoding29784C29784-C-1313AY.40.00002
noncoding29784C29784-C-1313B.10.000119
noncoding29784C29784-C-1313B.1.10.000236
noncoding29784C29784TCT1313B.1.1.5190.000516
noncoding29784C29784TCT1313B.1.177.440.006746
noncoding29784C29784TCT1313B.1.36.170.006423
noncoding29784C29784TCT1313B.1.5260.000306
noncoding29784C29784-C-1212B.1.3510.000357
noncoding29784C29784ACA1212P.10.000189
noncoding29784C29784TCT1111B.1.1.330.00463
noncoding29784C29784-C-1111B.1.20.000097
noncoding29784C29784-C-1111B.1.2580.000732
noncoding29784C29784TCT1111B.1.5960.000959
noncoding29784C29784GCG1111P.10.000173
noncoding29784C29784TCT1010AY.200.000389
noncoding29784C29784-C-1010B.1.177.860.001835
noncoding29784C29784-C-1010P.10.000158
noncoding29784C29784TCT99AY.260.000255
noncoding29784C29784-C-99AY.290.000142
noncoding29784C29784TCT99AY.30.00009
noncoding29784C29784ACA99AY.470.00028
noncoding29784C29784TCT99AY.50.000186
noncoding29784C29784-C-99AY.610.000943
noncoding29784C29784TCT99P.20.00168
noncoding29784C29784TCT88AY.470.000249
noncoding29784C29784-C-88B.1.1.3170.003294
noncoding29784C29784TCT88B.1.1.4200.008048
noncoding29784C29784-C-88B.1.5250.000905
noncoding29784C29784-C-88P.1.160.002993
noncoding29784C29784-C-88P.1.170.001294
noncoding29784C29784ACA77AY.1030.000043
noncoding29784C29784-C-77AY.390.000173
noncoding29784C29784-C-77AY.470.000218
noncoding29784C29784TCT77B.1.1.2160.006233
noncoding29784C29784TCT77B.1.177.810.001325
noncoding29784C29784TCT77B.1.177.820.003341
noncoding29784C29784TCT77B.1.2580.000466
noncoding29784C29784-C-77C.37.10.018325
noncoding29784C29784TCT77P.1.140.000335
noncoding29784C29784-C-66AY.1190.000212
noncoding29784C29784TCT66AY.330.000401
noncoding29784C29784-C-66AY.99.20.000553
noncoding29784C29784-C-66B.1.1600.000187
noncoding29784C29784-C-66B.1.2210.000426
noncoding29784C29784TCT66P.1.70.001916
noncoding29784C29784-C-55AY.1030.000031
noncoding29784C29784ACA55AY.1190.000177
noncoding29784C29784TCT55AY.420.000201
noncoding29784C29784-C-55AY.430.000022
noncoding29784C29784TCT55AY.610.000524
noncoding29784C29784TCT55AY.75.10.000902
noncoding29784C29784TCT55AY.9.20.000184
noncoding29784C29784-C-55B.1.2430.000348
noncoding29784C29784TCT55B.1.36.290.002587
noncoding29784C29784-C-55B.1.6190.004355
noncoding29784C29784-C-55C.10.011962
noncoding29784C29784-C-55Q.10.000632
noncoding29784C29784TCT44A.2.50.001996
noncoding29784C29784TCT44AD.20.000876
noncoding29784C29784TCT44AY.1180.000251
noncoding29784C29784TCT44AY.140.000352
noncoding29784C29784TCT44AY.230.000279
noncoding29784C29784ACA44AY.390.000099
noncoding29784C29784ACA44AY.440.000024
noncoding29784C29784TCT44B.1.1.3180.001207
noncoding29784C29784-C-44B.1.1770.000053
noncoding29784C29784TCT44B.1.2430.000278
noncoding29784C29784-C-44B.1.4290.000094
noncoding29784C29784TCT44B.1.4700.005618
noncoding29784C29784TCT33A0.001161
noncoding29784C29784-C-33AY.1090.002219
noncoding29784C29784-C-33AY.230.000209
noncoding29784C29784-C-33AY.30.00003
noncoding29784C29784ACA33AY.40.000005
noncoding29784C29784TCT33AY.460.000312
noncoding29784C29784-C-33AY.50.000062
noncoding29784C29784-C-33AY.540.000286
noncoding29784C29784TCT33AY.60.000123
noncoding29784C29784-C-33AY.700.000626
noncoding29784C29784ACA33B.10.000027
noncoding29784C29784TCT33B.1.1.280.000934
noncoding29784C29784TCT33B.1.1.4280.028302
noncoding29784C29784-C-33B.1.1.460.0131
noncoding29784C29784-C-33B.1.1.5190.000119
noncoding29784C29784TCT33B.1.1.520.036585
noncoding29784C29784TCT33B.1.1690.044776
noncoding29784C29784TCT33B.1.2340.000396
noncoding29784C29784TCT33B.1.36.80.003
noncoding29784C29784TCT33B.1.5030.007463
noncoding29784C29784TCT33B.1.5170.001281
noncoding29784C29784-C-33B.1.5950.000783
noncoding29784C29784TCT33B.1.595.10.017544
noncoding29784C29784TCT33B.400.001093
noncoding29784C29784TCT33C.160.003181
noncoding29784C29784-C-33P.20.00056
noncoding29784C29784-C-22A0.000774
noncoding29784C29784-C-22AY.1000.000092
noncoding29784C29784-C-22AY.1020.000053
noncoding29784C29784-C-22AY.1170.000169
noncoding29784C29784TCT22AY.1200.000074
noncoding29784C29784TCT22AY.190.002281
noncoding29784C29784-C-22AY.200.000078
noncoding29784C29784TCT22AY.34.10.00102
noncoding29784C29784TCT22AY.350.000466
noncoding29784C29784GCG22AY.440.000012
noncoding29784C29784TCT22AY.450.000243
noncoding29784C29784-C-22AY.46.20.001271
noncoding29784C29784TCT22AY.46.60.000144
noncoding29784C29784ACA22AY.50.000041
noncoding29784C29784-C-22AY.5.30.000675
noncoding29784C29784TCT22AY.5.40.000553
noncoding29784C29784TCT22AY.650.001066
noncoding29784C29784TCT22AY.680.000547
noncoding29784C29784-C-22AY.75.10.000361
noncoding29784C29784-C-22AY.840.000875
noncoding29784C29784-C-22AY.950.001522
noncoding29784C29784-C-22AY.98.10.000097
noncoding29784C29784-C-22B0.000256
noncoding29784C29784TCT22B.1.1.10.000653
noncoding29784C29784-C-22B.1.1.1660.066667
noncoding29784C29784TCT22B.1.1.2070.002364
noncoding29784C29784TCT22B.1.1.3060.000877
noncoding29784C29784-C-22B.1.1.3110.000716
noncoding29784C29784TCT22B.1.1.3120.003824
noncoding29784C29784-C-22B.1.1.3480.001592
noncoding29784C29784TCT22B.1.1.3730.047619
noncoding29784C29784TCT22B.1.1.4480.004065
noncoding29784C29784TCT22B.1.1.500.001358
noncoding29784C29784-C-22B.1.1.5230.003125
noncoding29784C29784TCT22B.1.1.630.000772
noncoding29784C29784TCT22B.1.1040.00738
noncoding29784C29784TCT22B.1.177.170.001642
noncoding29784C29784-C-22B.1.177.330.003289
noncoding29784C29784TCT22B.1.177.40.000422
noncoding29784C29784TCT22B.1.177.600.000437
noncoding29784C29784TCT22B.1.177.690.002967
noncoding29784C29784TCT22B.1.2210.000142
noncoding29784C29784TCT22B.1.3110.000549
noncoding29784C29784TCT22B.1.351.20.000605
noncoding29784C29784TCT22B.1.3690.00057
noncoding29784C29784TCT22B.1.4090.001563
noncoding29784C29784TCT22B.1.466.20.000782
noncoding29784C29784TCT22B.1.4740.003802
noncoding29784C29784TCT22B.1.4990.002101
noncoding29784C29784-C-22B.1.5260.000047
noncoding29784C29784-C-22B.1.6210.000177
noncoding29784C29784TCT22B.1.621.10.001012
noncoding29784C29784-C-22B.390.004662
noncoding29784C29784TCT22B.570.030303
noncoding29784C29784TCT22C.36.20.068966
noncoding29784C29784TCT22D.20.00015
noncoding29784C29784-C-22P.1.10.000635
noncoding29784C29784TCT22P.1.100.000539
noncoding29784C29784TCT22P.1.120.000968
noncoding29784C29784-C-22P.1.150.000465
noncoding29784C29784-C-22P.1.70.000639
noncoding29784C29784TCT22Q.10.000253
noncoding29784C29784ACA11A0.000387
noncoding29784C29784TCT11A.10.000282
noncoding29784C29784-C-11A.10.000282
noncoding29784C29784TCT11A.290.005319
noncoding29784C29784GCG11AY.1000.000046
noncoding29784C29784TCT11AY.1130.000142
noncoding29784C29784ACA11AY.1130.000142
noncoding29784C29784GCG11AY.1130.000142
noncoding29784C29784-C-11AY.1130.000142
noncoding29784C29784-C-11AY.1180.000063
noncoding29784C29784-C-11AY.1200.000037
noncoding29784C29784-C-11AY.120.10.000321
noncoding29784C29784TCT11AY.120.10.000321
noncoding29784C29784-C-11AY.140.000088
noncoding29784C29784TCT11AY.16.10.00047
noncoding29784C29784TCT11AY.20.000356
noncoding29784C29784TCT11AY.23.10.000417
noncoding29784C29784ACA11AY.250.000006
noncoding29784C29784-C-11AY.260.000028
noncoding29784C29784TCT11AY.290.000016
noncoding29784C29784ACA11AY.29.10.000221
noncoding29784C29784ACA11AY.30.00001
noncoding29784C29784-C-11AY.3.10.000085
noncoding29784C29784TCT11AY.3.10.000085
noncoding29784C29784-C-11AY.300.000396
noncoding29784C29784TCT11AY.340.000097
noncoding29784C29784TCT11AY.370.000316
noncoding29784C29784-C-11AY.39.10.00004
noncoding29784C29784TCT11AY.4.20.000022
noncoding29784C29784-C-11AY.4.2.10.000149
noncoding29784C29784TCT11AY.400.000964
noncoding29784C29784-C-11AY.400.000964
noncoding29784C29784-C-11AY.420.00004
noncoding29784C29784ACA11AY.430.000004
noncoding29784C29784ACA11AY.450.000122
noncoding29784C29784-C-11AY.450.000122
noncoding29784C29784ACA11AY.460.000104
noncoding29784C29784-C-11AY.460.000104
noncoding29784C29784-C-11AY.46.30.000934
noncoding29784C29784-C-11AY.46.40.000165
noncoding29784C29784-C-11AY.590.00053
noncoding29784C29784-C-11AY.620.000436
noncoding29784C29784TCT11AY.620.000436
noncoding29784C29784ACA11AY.690.000187
noncoding29784C29784TCT11AY.690.000187
noncoding29784C29784-C-11AY.70.000196
noncoding29784C29784TCT11AY.70.000196
noncoding29784C29784-C-11AY.750.000056
noncoding29784C29784-C-11AY.810.001992
noncoding29784C29784-C-11AY.850.000427
noncoding29784C29784-C-11AY.870.000833
noncoding29784C29784-C-11AY.90.000068
noncoding29784C29784TCT11AY.90.000068
noncoding29784C29784-C-11AY.9.10.000084
noncoding29784C29784-C-11AY.9.20.000037
noncoding29784C29784ACA11AY.9.20.000037
noncoding29784C29784TCT11AY.950.000761
noncoding29784C29784TCT11AY.970.001701
noncoding29784C29784-C-11AY.980.000079
noncoding29784C29784TCT11AY.980.000079
noncoding29784C29784TCT11AY.98.10.000048
noncoding29784C29784TCT11AY.99.10.001553
noncoding29784C29784TCT11AZ.10.000867
noncoding29784C29784TCT11B0.000128
noncoding29784C29784GCG11B.1.10.000018
noncoding29784C29784ACA11B.1.10.000018
noncoding29784C29784TCT11B.1.1.1170.009709
noncoding29784C29784TCT11B.1.1.1220.045455
noncoding29784C29784TCT11B.1.1.1700.001247
noncoding29784C29784-C-11B.1.1.1700.001247
noncoding29784C29784-C-11B.1.1.1970.037037
noncoding29784C29784-C-11B.1.1.2140.000055
noncoding29784C29784ACA11B.1.1.2160.00089
noncoding29784C29784-C-11B.1.1.2180.007692
noncoding29784C29784-C-11B.1.1.2220.000204
noncoding29784C29784GCG11B.1.1.2430.004082
noncoding29784C29784TCT11B.1.1.2680.014925
noncoding29784C29784TCT11B.1.1.2690.001353
noncoding29784C29784-C-11B.1.1.2770.000759
noncoding29784C29784TCT11B.1.1.2770.000759
noncoding29784C29784-C-11B.1.1.280.000311
noncoding29784C29784TCT11B.1.1.3040.002809
noncoding29784C29784-C-11B.1.1.3060.000438
noncoding29784C29784-C-11B.1.1.330.000421
noncoding29784C29784TCT11B.1.1.3350.012987
noncoding29784C29784TCT11B.1.1.370.000193
noncoding29784C29784TCT11B.1.1.3720.000689
noncoding29784C29784TCT11B.1.1.390.00051
noncoding29784C29784TCT11B.1.1.3980.003226
noncoding29784C29784-C-11B.1.1.4130.006897
noncoding29784C29784TCT11B.1.1.4610.012048
noncoding29784C29784-C-11B.1.1.5280.004808
noncoding29784C29784-C-11B.1.1.540.003021
noncoding29784C29784TCT11B.1.1.540.003021
noncoding29784C29784-C-11B.1.1.990.02381
noncoding29784C29784-C-11B.1.1110.001175
noncoding29784C29784-C-11B.1.160.330.004425
noncoding29784C29784TCT11B.1.177.120.000152
noncoding29784C29784TCT11B.1.177.160.000664
noncoding29784C29784TCT11B.1.177.350.000691
noncoding29784C29784TCT11B.1.177.570.000281
noncoding29784C29784TCT11B.1.177.70.000165
noncoding29784C29784TCT11B.1.177.770.000726
noncoding29784C29784TCT11B.1.1990.004132
noncoding29784C29784ACA11B.1.20.000009
noncoding29784C29784-C-11B.1.2100.002132
noncoding29784C29784TCT11B.1.2100.002132
noncoding29784C29784TCT11B.1.221.30.000833
noncoding29784C29784GCG11B.1.2340.000132
noncoding29784C29784ACA11B.1.2420.018868
noncoding29784C29784TCT11B.1.2890.00266
noncoding29784C29784TCT11B.1.3200.001245
noncoding29784C29784TCT11B.1.3240.001605
noncoding29784C29784ACA11B.1.3510.00003
noncoding29784C29784-C-11B.1.351.20.000303
noncoding29784C29784-C-11B.1.36.310.001751
noncoding29784C29784-C-11B.1.36.80.001
noncoding29784C29784TCT11B.1.3670.000792
noncoding29784C29784TCT11B.1.3890.001002
noncoding29784C29784ACA11B.1.3960.000706
noncoding29784C29784TCT11B.1.4220.000812
noncoding29784C29784TCT11B.1.438.10.000107
noncoding29784C29784TCT11B.1.4410.009615
noncoding29784C29784-C-11B.1.466.10.007194
noncoding29784C29784TCT11B.1.564.10.001577
noncoding29784C29784TCT11B.1.5650.00081
noncoding29784C29784GCG11B.1.5760.000907
noncoding29784C29784TCT11B.1.6060.006024
noncoding29784C29784-C-11B.1.617.30.002985
noncoding29784C29784TCT11B.1.6190.000871
noncoding29784C29784-C-11B.1.6270.00202
noncoding29784C29784-C-11B.1.6300.005236
noncoding29784C29784TCT11B.1.80.001972
noncoding29784C29784TCT11B.1.9.50.005682
noncoding29784C29784TCT11B.260.014706
noncoding29784C29784TCT11B.280.003279
noncoding29784C29784TCT11B.4.20.066667
noncoding29784C29784TCT11B.4.70.010101
noncoding29784C29784TCT11C.140.004329
noncoding29784C29784TCT11C.360.000911
noncoding29784C29784-C-11C.360.000911
noncoding29784C29784-C-11C.370.000116
noncoding29784C29784ACA11C.370.000116
noncoding29784C29784TCT11C.400.027778
noncoding29784C29784ACA11D.20.000075
noncoding29784C29784TCT11N.90.005952
noncoding29784C29784ACA11P.1.10.000318
noncoding29784C29784ACA11P.1.160.000374
noncoding29784C29784TCT11P.1.160.000374
noncoding29784C29784ACA11P.1.20.001156
noncoding29784C29784GCG11P.1.20.001156
noncoding29784C29784TCT11P.1.60.001946
noncoding29784C29784-C-11Q.20.000613
noncoding29784C29784TCT11Q.30.000145
noncoding29784C29784TCT11Q.40.000455
noncoding29784C29784TCT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.