CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29777 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29777G29777TnoncodingGT40084008129777-29777

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29777G29777TGT40084008All0.000767
noncoding29777G29777TGT376376B.1.617.20.001416
noncoding29777G29777TGT368368B.1.1.70.000329
noncoding29777G29777TGT286286AY.40.000445
noncoding29777G29777TGT251251B.1.10.004553
noncoding29777G29777TGT241241AY.430.001068
noncoding29777G29777TGT220220AY.250.001323
noncoding29777G29777TGT162162B.1.4270.008181
noncoding29777G29777TGT159159AY.99.20.014653
noncoding29777G29777TGT152152D.20.011406
noncoding29777G29777TGT129129AY.1020.00342
noncoding29777G29777TGT100100AY.30.000995
noncoding29777G29777TGT9292AY.4.20.001995
noncoding29777G29777TGT8181AY.1180.005075
noncoding29777G29777TGT7575AY.1030.000466
noncoding29777G29777TGT6969B.10.000632
noncoding29777G29777TGT6666AY.98.10.003196
noncoding29777G29777TGT5757B.1.4290.001341
noncoding29777G29777TGT5656AY.440.000341
noncoding29777G29777TGT4747AY.9.20.001726
noncoding29777G29777TGT4646AY.750.002577
noncoding29777G29777TGT4141AY.420.001649
noncoding29777G29777TGT3838B.1.1.5190.001509
noncoding29777G29777TGT3737AY.390.000914
noncoding29777G29777TGT3535AY.1190.001236
noncoding29777G29777TGT3333AY.470.001026
noncoding29777G29777TGT2929AY.330.001937
noncoding29777G29777TGT2727B.1.20.000238
noncoding29777G29777TGT2626AY.610.002724
noncoding29777G29777TGT2121AY.50.000434
noncoding29777G29777TGT2020B.1.1.820.769231
noncoding29777G29777TGT2020B.1.3510.000595
noncoding29777G29777TGT1818AY.130.002898
noncoding29777G29777TGT1818AY.9.10.001507
noncoding29777G29777TGT1818AY.980.001422
noncoding29777G29777TGT1717AY.540.001621
noncoding29777G29777TGT1717B.1.1.381
noncoding29777G29777TGT1414AY.116.10.00436
noncoding29777G29777TGT1414AY.990.01469
noncoding29777G29777TGT1313AY.260.000368
noncoding29777G29777TGT1212AY.1000.000552
noncoding29777G29777TGT1212AY.280.022684
noncoding29777G29777TGT1212AY.460.001249
noncoding29777G29777TGT1212B.1.360.001751
noncoding29777G29777TGT1111AY.450.001339
noncoding29777G29777TGT1111B.1.5520.166667
noncoding29777G29777TGT1010AY.70.00196
noncoding29777G29777TGT1010B.1.1770.000132
noncoding29777G29777TGT1010B.1.177.600.002184
noncoding29777G29777TGT1010P.10.000158
noncoding29777G29777TGT1010R.10.0009
noncoding29777G29777TGT99AY.340.000873
noncoding29777G29777TGT88AY.1060.002679
noncoding29777G29777TGT88AY.1200.000297
noncoding29777G29777TGT88AY.230.000558
noncoding29777G29777TGT88AY.320.00426
noncoding29777G29777TGT88AY.46.60.000578
noncoding29777G29777TGT88B.1.1600.00025
noncoding29777G29777TGT88B.1.5260.000188
noncoding29777G29777TGT88P.20.001493
noncoding29777G29777TGT77AY.770.007892
noncoding29777G29777TGT77B.1.1.2220.001428
noncoding29777G29777TGT77B.1.177.860.001284
noncoding29777G29777TGT77B.1.2340.000924
noncoding29777G29777TGT77B.1.3890.007014
noncoding29777G29777TGT66AY.350.001398
noncoding29777G29777TGT66AY.690.00112
noncoding29777G29777TGT66B.1.1.1890.009077
noncoding29777G29777TGT66B.1.2400.001293
noncoding29777G29777TGT66B.1.2580.000399
noncoding29777G29777TGT55AY.1080.005513
noncoding29777G29777TGT55AY.1170.000423
noncoding29777G29777TGT55AY.16.10.00235
noncoding29777G29777TGT55AY.290.000079
noncoding29777G29777TGT55AY.3.10.000426
noncoding29777G29777TGT55AY.4.2.10.000745
noncoding29777G29777TGT55AY.46.40.000823
noncoding29777G29777TGT55B.1.6370.000365
noncoding29777G29777TGT44AY.1160.001147
noncoding29777G29777TGT44AY.120.001264
noncoding29777G29777TGT44AY.240.001724
noncoding29777G29777TGT44AY.270.000259
noncoding29777G29777TGT44AY.46.50.000794
noncoding29777G29777TGT44AY.840.00175
noncoding29777G29777TGT44B.1.1.280.001245
noncoding29777G29777TGT44B.1.4080.01476
noncoding29777G29777TGT44B.1.5960.000349
noncoding29777G29777TGT44Q.30.00058
noncoding29777G29777TGT33AY.1110.000549
noncoding29777G29777TGT33AY.360.000445
noncoding29777G29777TGT33AY.5.40.00083
noncoding29777G29777TGT33AY.550.002752
noncoding29777G29777TGT33AY.640.001786
noncoding29777G29777TGT33AY.7.10.000338
noncoding29777G29777TGT33AY.75.10.000541
noncoding29777G29777TGT33B.1.1.3710.03125
noncoding29777G29777TGT33B.1.1.630.001157
noncoding29777G29777TGT33B.1.36.290.001552
noncoding29777G29777TGT33B.1.3670.002377
noncoding29777G29777TGT33B.1.5820.001472
noncoding29777G29777TGT33B.1.6210.000266
noncoding29777G29777TGT33C.40.03
noncoding29777G29777TGT33W.10.026087
noncoding29777G29777TGT22AY.10.000791
noncoding29777G29777TGT22AY.1040.003968
noncoding29777G29777TGT22AY.1140.000462
noncoding29777G29777TGT22AY.190.002281
noncoding29777G29777TGT22AY.370.000632
noncoding29777G29777TGT22AY.480.00093
noncoding29777G29777TGT22AY.60.000082
noncoding29777G29777TGT22AY.680.000547
noncoding29777G29777TGT22AY.700.000417
noncoding29777G29777TGT22AY.710.00095
noncoding29777G29777TGT22AY.90.000135
noncoding29777G29777TGT22AY.960.004149
noncoding29777G29777TGT22B.1.1.1860.006873
noncoding29777G29777TGT22B.1.1.2840.000215
noncoding29777G29777TGT22B.1.1.3060.000877
noncoding29777G29777TGT22B.1.1.330.000842
noncoding29777G29777TGT22B.1.1.4160.00181
noncoding29777G29777TGT22B.1.1.710.012121
noncoding29777G29777TGT22B.1.2430.000139
noncoding29777G29777TGT22B.1.3490.00143
noncoding29777G29777TGT22B.1.351.30.001753
noncoding29777G29777TGT22B.1.351.50.001199
noncoding29777G29777TGT22B.1.3770.009132
noncoding29777G29777TGT22B.1.4110.007407
noncoding29777G29777TGT22B.1.438.10.000215
noncoding29777G29777TGT22B.1.5170.000854
noncoding29777G29777TGT22B.1.5680.002222
noncoding29777G29777TGT22B.1.6090.000959
noncoding29777G29777TGT22B.1.617.10.000258
noncoding29777G29777TGT22B.280.006557
noncoding29777G29777TGT22C.10.004785
noncoding29777G29777TGT22P.1.150.000465
noncoding29777G29777TGT22P.1.170.000324
noncoding29777G29777TGT11AY.1050.000643
noncoding29777G29777TGT11AY.1070.000466
noncoding29777G29777TGT11AY.1090.00074
noncoding29777G29777TGT11AY.1100.000113
noncoding29777G29777TGT11AY.1130.000142
noncoding29777G29777TGT11AY.1150.005208
noncoding29777G29777TGT11AY.120.10.000321
noncoding29777G29777TGT11AY.1210.000135
noncoding29777G29777TGT11AY.140.000088
noncoding29777G29777TGT11AY.200.000039
noncoding29777G29777TGT11AY.39.10.00004
noncoding29777G29777TGT11AY.46.10.001027
noncoding29777G29777TGT11AY.46.30.000934
noncoding29777G29777TGT11AY.500.000799
noncoding29777G29777TGT11AY.510.000909
noncoding29777G29777TGT11AY.530.000288
noncoding29777G29777TGT11AY.560.001605
noncoding29777G29777TGT11AY.650.000533
noncoding29777G29777TGT11AY.660.00107
noncoding29777G29777TGT11AY.670.000464
noncoding29777G29777TGT11AY.740.000116
noncoding29777G29777TGT11AY.780.001541
noncoding29777G29777TGT11AY.860.00083
noncoding29777G29777TGT11AY.900.000684
noncoding29777G29777TGT11AY.920.000287
noncoding29777G29777TGT11B.1.1.1350.004695
noncoding29777G29777TGT11B.1.1.1410.002012
noncoding29777G29777TGT11B.1.1.2140.000055
noncoding29777G29777TGT11B.1.1.2160.00089
noncoding29777G29777TGT11B.1.1.2340.012048
noncoding29777G29777TGT11B.1.1.250.000569
noncoding29777G29777TGT11B.1.1.2890.002083
noncoding29777G29777TGT11B.1.1.30.008696
noncoding29777G29777TGT11B.1.1.3050.003861
noncoding29777G29777TGT11B.1.1.3120.001912
noncoding29777G29777TGT11B.1.1.3260.001761
noncoding29777G29777TGT11B.1.1.3480.000796
noncoding29777G29777TGT11B.1.1.3980.003226
noncoding29777G29777TGT11B.1.1.4070.041667
noncoding29777G29777TGT11B.1.1.5180.006329
noncoding29777G29777TGT11B.1.1.700.000341
noncoding29777G29777TGT11B.1.1.990.02381
noncoding29777G29777TGT11B.1.1390.000733
noncoding29777G29777TGT11B.1.177.40.000211
noncoding29777G29777TGT11B.1.177.440.000519
noncoding29777G29777TGT11B.1.177.540.000606
noncoding29777G29777TGT11B.1.177.550.002331
noncoding29777G29777TGT11B.1.177.570.000281
noncoding29777G29777TGT11B.1.177.70.000165
noncoding29777G29777TGT11B.1.177.810.000189
noncoding29777G29777TGT11B.1.2200.01087
noncoding29777G29777TGT11B.1.243.20.014493
noncoding29777G29777TGT11B.1.3110.000275
noncoding29777G29777TGT11B.1.3620.001541
noncoding29777G29777TGT11B.1.362.20.004717
noncoding29777G29777TGT11B.1.4380.006536
noncoding29777G29777TGT11B.1.5490.007194
noncoding29777G29777TGT11B.1.5640.000426
noncoding29777G29777TGT11B.1.5750.000303
noncoding29777G29777TGT11B.1.5950.000261
noncoding29777G29777TGT11B.1.5970.00463
noncoding29777G29777TGT11B.1.617.30.002985
noncoding29777G29777TGT11B.1.6200.000946
noncoding29777G29777TGT11B.3.10.001658
noncoding29777G29777TGT11C.170.055556
noncoding29777G29777TGT11C.360.000911
noncoding29777G29777TGT11C.370.000116
noncoding29777G29777TGT11N.50.001767
noncoding29777G29777TGT11P.1.100.000269
noncoding29777G29777TGT11P.1.80.004785

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.