CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29777 & Codon = -

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29777	G29777-		noncoding	G	-	3995	3995	1	29777-29777

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29777	G29777-	G	-	3995	3995	All	0.000764
noncoding	29777	G29777-	G	-	1762	1762	B.1.1.311	0.631089
noncoding	29777	G29777-	G	-	1403	1403	B.1.1.7	0.001256
noncoding	29777	G29777-	G	-	164	164	B.1.2	0.001444
noncoding	29777	G29777-	G	-	50	50	B.1.617.2	0.000188
noncoding	29777	G29777-	G	-	36	36	B.1.1.351	0.100559
noncoding	29777	G29777-	G	-	36	36	B.1.160	0.001123
noncoding	29777	G29777-	G	-	27	27	AY.4	0.000042
noncoding	29777	G29777-	G	-	25	25	B.1.525	0.002829
noncoding	29777	G29777-	G	-	23	23	B.1.1.519	0.000913
noncoding	29777	G29777-	G	-	23	23	P.1	0.000362
noncoding	29777	G29777-	G	-	21	21	AY.44	0.000128
noncoding	29777	G29777-	G	-	21	21	B.1	0.000192
noncoding	29777	G29777-	G	-	21	21	B.1.1	0.000381
noncoding	29777	G29777-	G	-	19	19	AY.92	0.005458
noncoding	29777	G29777-	G	-	14	14	AY.25	0.000084
noncoding	29777	G29777-	G	-	13	13	B.1.351	0.000386
noncoding	29777	G29777-	G	-	12	12	AY.43	0.000053
noncoding	29777	G29777-	G	-	12	12	B.1.258	0.000799
noncoding	29777	G29777-	G	-	10	10	AY.103	0.000062
noncoding	29777	G29777-	G	-	10	10	AY.29	0.000158
noncoding	29777	G29777-	G	-	10	10	AY.61	0.001048
noncoding	29777	G29777-	G	-	10	10	B.1.177.86	0.001835
noncoding	29777	G29777-	G	-	8	8	AY.47	0.000249
noncoding	29777	G29777-	G	-	8	8	B.1.1.317	0.003294
noncoding	29777	G29777-	G	-	8	8	C.37.1	0.020942
noncoding	29777	G29777-	G	-	8	8	P.1.17	0.001294
noncoding	29777	G29777-	G	-	7	7	AY.39	0.000173
noncoding	29777	G29777-	G	-	7	7	B.1.221	0.000497
noncoding	29777	G29777-	G	-	7	7	P.1.16	0.002619
noncoding	29777	G29777-	G	-	6	6	AY.119	0.000212
noncoding	29777	G29777-	G	-	6	6	AY.3	0.00006
noncoding	29777	G29777-	G	-	5	5	AY.99.2	0.000461
noncoding	29777	G29777-	G	-	5	5	B.1.177	0.000066
noncoding	29777	G29777-	G	-	5	5	B.1.619	0.004355
noncoding	29777	G29777-	G	-	5	5	C.1	0.011962
noncoding	29777	G29777-	G	-	5	5	P.1.14	0.000239
noncoding	29777	G29777-	G	-	5	5	Q.1	0.000632
noncoding	29777	G29777-	G	-	4	4	AY.100	0.000184
noncoding	29777	G29777-	G	-	4	4	AY.102	0.000106
noncoding	29777	G29777-	G	-	4	4	B.1.243	0.000278
noncoding	29777	G29777-	G	-	3	3	AY.109	0.002219
noncoding	29777	G29777-	G	-	3	3	AY.118	0.000188
noncoding	29777	G29777-	G	-	3	3	AY.23	0.000209
noncoding	29777	G29777-	G	-	3	3	AY.30	0.001187
noncoding	29777	G29777-	G	-	3	3	AY.5	0.000062
noncoding	29777	G29777-	G	-	3	3	AY.54	0.000286
noncoding	29777	G29777-	G	-	3	3	AY.70	0.000626
noncoding	29777	G29777-	G	-	3	3	AY.9.1	0.000251
noncoding	29777	G29777-	G	-	3	3	AY.9.2	0.00011
noncoding	29777	G29777-	G	-	3	3	B.1.1.222	0.000612
noncoding	29777	G29777-	G	-	3	3	B.1.1.236	0.02069
noncoding	29777	G29777-	G	-	3	3	B.1.1.46	0.0131
noncoding	29777	G29777-	G	-	3	3	B.1.429	0.000071
noncoding	29777	G29777-	G	-	3	3	B.1.526	0.000071
noncoding	29777	G29777-	G	-	3	3	B.1.595	0.000783
noncoding	29777	G29777-	G	-	3	3	B.1.621	0.000266
noncoding	29777	G29777-	G	-	2	2		0.111111
noncoding	29777	G29777-	G	-	2	2	A	0.000774
noncoding	29777	G29777-	G	-	2	2	AY.117	0.000169
noncoding	29777	G29777-	G	-	2	2	AY.20	0.000078
noncoding	29777	G29777-	G	-	2	2	AY.3.1	0.000171
noncoding	29777	G29777-	G	-	2	2	AY.4.2.1	0.000298
noncoding	29777	G29777-	G	-	2	2	AY.45	0.000243
noncoding	29777	G29777-	G	-	2	2	AY.46.2	0.001271
noncoding	29777	G29777-	G	-	2	2	AY.46.4	0.000329
noncoding	29777	G29777-	G	-	2	2	AY.5.3	0.000675
noncoding	29777	G29777-	G	-	2	2	AY.75.1	0.000361
noncoding	29777	G29777-	G	-	2	2	AY.84	0.000875
noncoding	29777	G29777-	G	-	2	2	AY.9	0.000135
noncoding	29777	G29777-	G	-	2	2	AY.95	0.001522
noncoding	29777	G29777-	G	-	2	2	AY.98.1	0.000097
noncoding	29777	G29777-	G	-	2	2	B	0.000256
noncoding	29777	G29777-	G	-	2	2	B.1.1.166	0.066667
noncoding	29777	G29777-	G	-	2	2	B.1.1.189	0.003026
noncoding	29777	G29777-	G	-	2	2	B.1.1.214	0.000111
noncoding	29777	G29777-	G	-	2	2	B.1.1.348	0.001592
noncoding	29777	G29777-	G	-	2	2	B.1.1.523	0.003125
noncoding	29777	G29777-	G	-	2	2	B.1.210	0.004264
noncoding	29777	G29777-	G	-	2	2	B.39	0.004662
noncoding	29777	G29777-	G	-	2	2	C.3	0.015267
noncoding	29777	G29777-	G	-	2	2	D.2	0.00015
noncoding	29777	G29777-	G	-	2	2	P.1.1	0.000635
noncoding	29777	G29777-	G	-	2	2	P.1.15	0.000465
noncoding	29777	G29777-	G	-	2	2	P.1.7	0.000639
noncoding	29777	G29777-	G	-	1	1	AY.113	0.000142
noncoding	29777	G29777-	G	-	1	1	AY.12	0.000316
noncoding	29777	G29777-	G	-	1	1	AY.120	0.000037
noncoding	29777	G29777-	G	-	1	1	AY.14	0.000088
noncoding	29777	G29777-	G	-	1	1	AY.26	0.000028
noncoding	29777	G29777-	G	-	1	1	AY.33	0.000067
noncoding	29777	G29777-	G	-	1	1	AY.39.1	0.00004
noncoding	29777	G29777-	G	-	1	1	AY.40	0.000964
noncoding	29777	G29777-	G	-	1	1	AY.42	0.00004
noncoding	29777	G29777-	G	-	1	1	AY.46	0.000104
noncoding	29777	G29777-	G	-	1	1	AY.46.3	0.000934
noncoding	29777	G29777-	G	-	1	1	AY.59	0.00053
noncoding	29777	G29777-	G	-	1	1	AY.7	0.000196
noncoding	29777	G29777-	G	-	1	1	AY.75	0.000056
noncoding	29777	G29777-	G	-	1	1	AY.80	0.001129
noncoding	29777	G29777-	G	-	1	1	AY.81	0.001992
noncoding	29777	G29777-	G	-	1	1	AY.85	0.000427
noncoding	29777	G29777-	G	-	1	1	AY.87	0.000833
noncoding	29777	G29777-	G	-	1	1	AY.98	0.000079
noncoding	29777	G29777-	G	-	1	1	B.1.1.10	0.001115
noncoding	29777	G29777-	G	-	1	1	B.1.1.170	0.001247
noncoding	29777	G29777-	G	-	1	1	B.1.1.197	0.037037
noncoding	29777	G29777-	G	-	1	1	B.1.1.218	0.007692
noncoding	29777	G29777-	G	-	1	1	B.1.1.277	0.000759
noncoding	29777	G29777-	G	-	1	1	B.1.1.28	0.000311
noncoding	29777	G29777-	G	-	1	1	B.1.1.306	0.000438
noncoding	29777	G29777-	G	-	1	1	B.1.1.33	0.000421
noncoding	29777	G29777-	G	-	1	1	B.1.1.337	0.003597
noncoding	29777	G29777-	G	-	1	1	B.1.1.37	0.000193
noncoding	29777	G29777-	G	-	1	1	B.1.1.413	0.006897
noncoding	29777	G29777-	G	-	1	1	B.1.1.528	0.004808
noncoding	29777	G29777-	G	-	1	1	B.1.1.54	0.003021
noncoding	29777	G29777-	G	-	1	1	B.1.1.99	0.02381
noncoding	29777	G29777-	G	-	1	1	B.1.110	0.004525
noncoding	29777	G29777-	G	-	1	1	B.1.111	0.001175
noncoding	29777	G29777-	G	-	1	1	B.1.160.33	0.004425
noncoding	29777	G29777-	G	-	1	1	B.1.177.12	0.000152
noncoding	29777	G29777-	G	-	1	1	B.1.177.32	0.00135
noncoding	29777	G29777-	G	-	1	1	B.1.177.33	0.001645
noncoding	29777	G29777-	G	-	1	1	B.1.177.42	0.000894
noncoding	29777	G29777-	G	-	1	1	B.1.177.44	0.000519
noncoding	29777	G29777-	G	-	1	1	B.1.177.6	0.000977
noncoding	29777	G29777-	G	-	1	1	B.1.177.75	0.001041
noncoding	29777	G29777-	G	-	1	1	B.1.177.79	0.002342
noncoding	29777	G29777-	G	-	1	1	B.1.240	0.000216
noncoding	29777	G29777-	G	-	1	1	B.1.258.17	0.000104
noncoding	29777	G29777-	G	-	1	1	B.1.298	0.002114
noncoding	29777	G29777-	G	-	1	1	B.1.351.2	0.000303
noncoding	29777	G29777-	G	-	1	1	B.1.36.31	0.001751
noncoding	29777	G29777-	G	-	1	1	B.1.36.8	0.001
noncoding	29777	G29777-	G	-	1	1	B.1.400	0.000429
noncoding	29777	G29777-	G	-	1	1	B.1.466.1	0.007194
noncoding	29777	G29777-	G	-	1	1	B.1.596	0.000087
noncoding	29777	G29777-	G	-	1	1	B.1.617.3	0.002985
noncoding	29777	G29777-	G	-	1	1	B.1.630	0.005236
noncoding	29777	G29777-	G	-	1	1	B.1.637	0.000073
noncoding	29777	G29777-	G	-	1	1	C.36	0.000911
noncoding	29777	G29777-	G	-	1	1	C.37	0.000116
noncoding	29777	G29777-	G	-	1	1	N.4	0.004255
noncoding	29777	G29777-	G	-	1	1	P.2	0.000187
noncoding	29777	G29777-	G	-	1	1	Q.2	0.000613
noncoding	29777	G29777-	G	-	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.