CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29777 | G29777T | noncoding | G | T | 4008 | 4008 | 1 | 29777-29777 | |
noncoding | 29777 | G29777- | noncoding | G | - | 3995 | 3995 | 1 | 29777-29777 | |
noncoding | 29777 | G29777A | noncoding | G | A | 1239 | 1239 | 1 | 29777-29777 | |
noncoding | 29777 | G29777C | noncoding | G | C | 199 | 199 | 1 | 29777-29777 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29777 | G29777T | G | T | 4008 | 4008 | All | 0.000767 |
noncoding | 29777 | G29777- | G | - | 3995 | 3995 | All | 0.000764 |
noncoding | 29777 | G29777- | G | - | 1762 | 1762 | B.1.1.311 | 0.631089 |
noncoding | 29777 | G29777- | G | - | 1403 | 1403 | B.1.1.7 | 0.001256 |
noncoding | 29777 | G29777A | G | A | 1239 | 1239 | All | 0.000237 |
noncoding | 29777 | G29777A | G | A | 695 | 695 | AY.14 | 0.061169 |
noncoding | 29777 | G29777T | G | T | 376 | 376 | B.1.617.2 | 0.001416 |
noncoding | 29777 | G29777T | G | T | 368 | 368 | B.1.1.7 | 0.000329 |
noncoding | 29777 | G29777T | G | T | 286 | 286 | AY.4 | 0.000445 |
noncoding | 29777 | G29777T | G | T | 251 | 251 | B.1.1 | 0.004553 |
noncoding | 29777 | G29777T | G | T | 241 | 241 | AY.43 | 0.001068 |
noncoding | 29777 | G29777T | G | T | 220 | 220 | AY.25 | 0.001323 |
noncoding | 29777 | G29777C | G | C | 199 | 199 | All | 0.000038 |
noncoding | 29777 | G29777- | G | - | 164 | 164 | B.1.2 | 0.001444 |
noncoding | 29777 | G29777T | G | T | 162 | 162 | B.1.427 | 0.008181 |
noncoding | 29777 | G29777T | G | T | 159 | 159 | AY.99.2 | 0.014653 |
noncoding | 29777 | G29777T | G | T | 152 | 152 | D.2 | 0.011406 |
noncoding | 29777 | G29777T | G | T | 129 | 129 | AY.102 | 0.00342 |
noncoding | 29777 | G29777C | G | C | 127 | 127 | B.1.1.7 | 0.000114 |
noncoding | 29777 | G29777T | G | T | 100 | 100 | AY.3 | 0.000995 |
noncoding | 29777 | G29777T | G | T | 92 | 92 | AY.4.2 | 0.001995 |
noncoding | 29777 | G29777A | G | A | 85 | 85 | B.1.1.7 | 0.000076 |
noncoding | 29777 | G29777T | G | T | 81 | 81 | AY.118 | 0.005075 |
noncoding | 29777 | G29777A | G | A | 80 | 80 | AY.4 | 0.000125 |
noncoding | 29777 | G29777A | G | A | 79 | 79 | AY.25 | 0.000475 |
noncoding | 29777 | G29777T | G | T | 75 | 75 | AY.103 | 0.000466 |
noncoding | 29777 | G29777T | G | T | 69 | 69 | B.1 | 0.000632 |
noncoding | 29777 | G29777T | G | T | 66 | 66 | AY.98.1 | 0.003196 |
noncoding | 29777 | G29777T | G | T | 57 | 57 | B.1.429 | 0.001341 |
noncoding | 29777 | G29777T | G | T | 56 | 56 | AY.44 | 0.000341 |
noncoding | 29777 | G29777- | G | - | 50 | 50 | B.1.617.2 | 0.000188 |
noncoding | 29777 | G29777T | G | T | 47 | 47 | AY.9.2 | 0.001726 |
noncoding | 29777 | G29777T | G | T | 46 | 46 | AY.75 | 0.002577 |
noncoding | 29777 | G29777T | G | T | 41 | 41 | AY.42 | 0.001649 |
noncoding | 29777 | G29777A | G | A | 41 | 41 | B.1.617.2 | 0.000154 |
noncoding | 29777 | G29777T | G | T | 38 | 38 | B.1.1.519 | 0.001509 |
noncoding | 29777 | G29777T | G | T | 37 | 37 | AY.39 | 0.000914 |
noncoding | 29777 | G29777- | G | - | 36 | 36 | B.1.1.351 | 0.100559 |
noncoding | 29777 | G29777- | G | - | 36 | 36 | B.1.160 | 0.001123 |
noncoding | 29777 | G29777T | G | T | 35 | 35 | AY.119 | 0.001236 |
noncoding | 29777 | G29777T | G | T | 33 | 33 | AY.47 | 0.001026 |
noncoding | 29777 | G29777T | G | T | 29 | 29 | AY.33 | 0.001937 |
noncoding | 29777 | G29777A | G | A | 28 | 28 | AY.111 | 0.005128 |
noncoding | 29777 | G29777- | G | - | 27 | 27 | AY.4 | 0.000042 |
noncoding | 29777 | G29777T | G | T | 27 | 27 | B.1.2 | 0.000238 |
noncoding | 29777 | G29777A | G | A | 26 | 26 | AY.103 | 0.000161 |
noncoding | 29777 | G29777T | G | T | 26 | 26 | AY.61 | 0.002724 |
noncoding | 29777 | G29777A | G | A | 26 | 26 | B.1.2 | 0.000229 |
noncoding | 29777 | G29777- | G | - | 25 | 25 | B.1.525 | 0.002829 |
noncoding | 29777 | G29777- | G | - | 23 | 23 | B.1.1.519 | 0.000913 |
noncoding | 29777 | G29777- | G | - | 23 | 23 | P.1 | 0.000362 |
noncoding | 29777 | G29777- | G | - | 21 | 21 | AY.44 | 0.000128 |
noncoding | 29777 | G29777T | G | T | 21 | 21 | AY.5 | 0.000434 |
noncoding | 29777 | G29777- | G | - | 21 | 21 | B.1 | 0.000192 |
noncoding | 29777 | G29777- | G | - | 21 | 21 | B.1.1 | 0.000381 |
noncoding | 29777 | G29777A | G | A | 20 | 20 | AY.44 | 0.000122 |
noncoding | 29777 | G29777T | G | T | 20 | 20 | B.1.1.82 | 0.769231 |
noncoding | 29777 | G29777T | G | T | 20 | 20 | B.1.351 | 0.000595 |
noncoding | 29777 | G29777- | G | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29777 | G29777T | G | T | 18 | 18 | AY.13 | 0.002898 |
noncoding | 29777 | G29777T | G | T | 18 | 18 | AY.9.1 | 0.001507 |
noncoding | 29777 | G29777T | G | T | 18 | 18 | AY.98 | 0.001422 |
noncoding | 29777 | G29777T | G | T | 17 | 17 | AY.54 | 0.001621 |
noncoding | 29777 | G29777T | G | T | 17 | 17 | B.1.1.38 | 1 |
noncoding | 29777 | G29777T | G | T | 14 | 14 | AY.116.1 | 0.00436 |
noncoding | 29777 | G29777- | G | - | 14 | 14 | AY.25 | 0.000084 |
noncoding | 29777 | G29777T | G | T | 14 | 14 | AY.99 | 0.01469 |
noncoding | 29777 | G29777C | G | C | 14 | 14 | B.1.1.397 | 0.031532 |
noncoding | 29777 | G29777T | G | T | 13 | 13 | AY.26 | 0.000368 |
noncoding | 29777 | G29777A | G | A | 13 | 13 | AY.43 | 0.000058 |
noncoding | 29777 | G29777- | G | - | 13 | 13 | B.1.351 | 0.000386 |
noncoding | 29777 | G29777T | G | T | 12 | 12 | AY.100 | 0.000552 |
noncoding | 29777 | G29777T | G | T | 12 | 12 | AY.28 | 0.022684 |
noncoding | 29777 | G29777- | G | - | 12 | 12 | AY.43 | 0.000053 |
noncoding | 29777 | G29777T | G | T | 12 | 12 | AY.46 | 0.001249 |
noncoding | 29777 | G29777- | G | - | 12 | 12 | B.1.258 | 0.000799 |
noncoding | 29777 | G29777T | G | T | 12 | 12 | B.1.36 | 0.001751 |
noncoding | 29777 | G29777A | G | A | 11 | 11 | AY.19 | 0.012543 |
noncoding | 29777 | G29777T | G | T | 11 | 11 | AY.45 | 0.001339 |
noncoding | 29777 | G29777T | G | T | 11 | 11 | B.1.552 | 0.166667 |
noncoding | 29777 | G29777- | G | - | 10 | 10 | AY.103 | 0.000062 |
noncoding | 29777 | G29777- | G | - | 10 | 10 | AY.29 | 0.000158 |
noncoding | 29777 | G29777- | G | - | 10 | 10 | AY.61 | 0.001048 |
noncoding | 29777 | G29777T | G | T | 10 | 10 | AY.7 | 0.00196 |
noncoding | 29777 | G29777T | G | T | 10 | 10 | B.1.177 | 0.000132 |
noncoding | 29777 | G29777T | G | T | 10 | 10 | B.1.177.60 | 0.002184 |
noncoding | 29777 | G29777- | G | - | 10 | 10 | B.1.177.86 | 0.001835 |
noncoding | 29777 | G29777T | G | T | 10 | 10 | P.1 | 0.000158 |
noncoding | 29777 | G29777T | G | T | 10 | 10 | R.1 | 0.0009 |
noncoding | 29777 | G29777T | G | T | 9 | 9 | AY.34 | 0.000873 |
noncoding | 29777 | G29777A | G | A | 9 | 9 | AY.98.1 | 0.000436 |
noncoding | 29777 | G29777A | G | A | 8 | 8 | A.2.5.2 | 0.012579 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | AY.106 | 0.002679 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | AY.120 | 0.000297 |
noncoding | 29777 | G29777A | G | A | 8 | 8 | AY.120.2.1 | 0.003986 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | AY.23 | 0.000558 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | AY.32 | 0.00426 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | AY.46.6 | 0.000578 |
noncoding | 29777 | G29777- | G | - | 8 | 8 | AY.47 | 0.000249 |
noncoding | 29777 | G29777- | G | - | 8 | 8 | B.1.1.317 | 0.003294 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | B.1.160 | 0.00025 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | B.1.526 | 0.000188 |
noncoding | 29777 | G29777- | G | - | 8 | 8 | C.37.1 | 0.020942 |
noncoding | 29777 | G29777- | G | - | 8 | 8 | P.1.17 | 0.001294 |
noncoding | 29777 | G29777T | G | T | 8 | 8 | P.2 | 0.001493 |
noncoding | 29777 | G29777A | G | A | 7 | 7 | AY.121 | 0.000947 |
noncoding | 29777 | G29777- | G | - | 7 | 7 | AY.39 | 0.000173 |
noncoding | 29777 | G29777C | G | C | 7 | 7 | AY.4 | 0.000011 |
noncoding | 29777 | G29777C | G | C | 7 | 7 | AY.40 | 0.00675 |
noncoding | 29777 | G29777A | G | A | 7 | 7 | AY.54 | 0.000667 |
noncoding | 29777 | G29777T | G | T | 7 | 7 | AY.77 | 0.007892 |
noncoding | 29777 | G29777A | G | A | 7 | 7 | B.1 | 0.000064 |
noncoding | 29777 | G29777T | G | T | 7 | 7 | B.1.1.222 | 0.001428 |
noncoding | 29777 | G29777T | G | T | 7 | 7 | B.1.177.86 | 0.001284 |
noncoding | 29777 | G29777- | G | - | 7 | 7 | B.1.221 | 0.000497 |
noncoding | 29777 | G29777T | G | T | 7 | 7 | B.1.234 | 0.000924 |
noncoding | 29777 | G29777T | G | T | 7 | 7 | B.1.389 | 0.007014 |
noncoding | 29777 | G29777- | G | - | 7 | 7 | P.1.16 | 0.002619 |
noncoding | 29777 | G29777- | G | - | 6 | 6 | AY.119 | 0.000212 |
noncoding | 29777 | G29777- | G | - | 6 | 6 | AY.3 | 0.00006 |
noncoding | 29777 | G29777T | G | T | 6 | 6 | AY.35 | 0.001398 |
noncoding | 29777 | G29777T | G | T | 6 | 6 | AY.69 | 0.00112 |
noncoding | 29777 | G29777T | G | T | 6 | 6 | B.1.1.189 | 0.009077 |
noncoding | 29777 | G29777T | G | T | 6 | 6 | B.1.240 | 0.001293 |
noncoding | 29777 | G29777T | G | T | 6 | 6 | B.1.258 | 0.000399 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | AY.108 | 0.005513 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | AY.117 | 0.000423 |
noncoding | 29777 | G29777A | G | A | 5 | 5 | AY.119 | 0.000177 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | AY.16.1 | 0.00235 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | AY.29 | 0.000079 |
noncoding | 29777 | G29777A | G | A | 5 | 5 | AY.3 | 0.00005 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | AY.3.1 | 0.000426 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | AY.4.2.1 | 0.000745 |
noncoding | 29777 | G29777A | G | A | 5 | 5 | AY.46.4 | 0.000823 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | AY.46.4 | 0.000823 |
noncoding | 29777 | G29777A | G | A | 5 | 5 | AY.62 | 0.002179 |
noncoding | 29777 | G29777- | G | - | 5 | 5 | AY.99.2 | 0.000461 |
noncoding | 29777 | G29777- | G | - | 5 | 5 | B.1.177 | 0.000066 |
noncoding | 29777 | G29777A | G | A | 5 | 5 | B.1.351 | 0.000149 |
noncoding | 29777 | G29777- | G | - | 5 | 5 | B.1.619 | 0.004355 |
noncoding | 29777 | G29777T | G | T | 5 | 5 | B.1.637 | 0.000365 |
noncoding | 29777 | G29777- | G | - | 5 | 5 | C.1 | 0.011962 |
noncoding | 29777 | G29777- | G | - | 5 | 5 | P.1.14 | 0.000239 |
noncoding | 29777 | G29777- | G | - | 5 | 5 | Q.1 | 0.000632 |
noncoding | 29777 | G29777- | G | - | 4 | 4 | AY.100 | 0.000184 |
noncoding | 29777 | G29777- | G | - | 4 | 4 | AY.102 | 0.000106 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | AY.116 | 0.001147 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | AY.12 | 0.001264 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | AY.24 | 0.001724 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | AY.27 | 0.000259 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | AY.46.5 | 0.000794 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | AY.84 | 0.00175 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | B.1.1.28 | 0.001245 |
noncoding | 29777 | G29777- | G | - | 4 | 4 | B.1.243 | 0.000278 |
noncoding | 29777 | G29777C | G | C | 4 | 4 | B.1.258 | 0.000266 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | B.1.408 | 0.01476 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | B.1.596 | 0.000349 |
noncoding | 29777 | G29777T | G | T | 4 | 4 | Q.3 | 0.00058 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | AY.111 | 0.000549 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.118 | 0.000188 |
noncoding | 29777 | G29777A | G | A | 3 | 3 | AY.13 | 0.000483 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.23 | 0.000209 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.30 | 0.001187 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | AY.36 | 0.000445 |
noncoding | 29777 | G29777A | G | A | 3 | 3 | AY.38 | 0.001498 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.5 | 0.000062 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | AY.5.4 | 0.00083 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.54 | 0.000286 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | AY.55 | 0.002752 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | AY.64 | 0.001786 |
noncoding | 29777 | G29777C | G | C | 3 | 3 | AY.66 | 0.003209 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | AY.7.1 | 0.000338 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.70 | 0.000626 |
noncoding | 29777 | G29777A | G | A | 3 | 3 | AY.75 | 0.000168 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | AY.75.1 | 0.000541 |
noncoding | 29777 | G29777A | G | A | 3 | 3 | AY.87 | 0.002498 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.9.1 | 0.000251 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | AY.9.2 | 0.00011 |
noncoding | 29777 | G29777C | G | C | 3 | 3 | B.1.1 | 0.000054 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | B.1.1.222 | 0.000612 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | B.1.1.236 | 0.02069 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | B.1.1.371 | 0.03125 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | B.1.1.46 | 0.0131 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | B.1.1.63 | 0.001157 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | B.1.36.29 | 0.001552 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | B.1.367 | 0.002377 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | B.1.429 | 0.000071 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | B.1.526 | 0.000071 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | B.1.582 | 0.001472 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | B.1.595 | 0.000783 |
noncoding | 29777 | G29777C | G | C | 3 | 3 | B.1.617.2 | 0.000011 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | B.1.621 | 0.000266 |
noncoding | 29777 | G29777- | G | - | 3 | 3 | B.1.621 | 0.000266 |
noncoding | 29777 | G29777A | G | A | 3 | 3 | B.1.621 | 0.000266 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | C.4 | 0.03 |
noncoding | 29777 | G29777A | G | A | 3 | 3 | P.1 | 0.000047 |
noncoding | 29777 | G29777A | G | A | 3 | 3 | P.1.14 | 0.000143 |
noncoding | 29777 | G29777T | G | T | 3 | 3 | W.1 | 0.026087 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | 0.111111 | |
noncoding | 29777 | G29777- | G | - | 2 | 2 | A | 0.000774 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.1 | 0.000791 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.104 | 0.003968 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.114 | 0.000462 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.117 | 0.000169 |
noncoding | 29777 | G29777A | G | A | 2 | 2 | AY.118 | 0.000125 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.19 | 0.002281 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29777 | G29777C | G | C | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.37 | 0.000632 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.4.2.1 | 0.000298 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.46.2 | 0.001271 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.46.4 | 0.000329 |
noncoding | 29777 | G29777A | G | A | 2 | 2 | AY.47 | 0.000062 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.48 | 0.00093 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.6 | 0.000082 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.68 | 0.000547 |
noncoding | 29777 | G29777A | G | A | 2 | 2 | AY.7 | 0.000392 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.70 | 0.000417 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.71 | 0.00095 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.75.1 | 0.000361 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.84 | 0.000875 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.9 | 0.000135 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.9 | 0.000135 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.95 | 0.001522 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | AY.96 | 0.004149 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B | 0.000256 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B.1.1.166 | 0.066667 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.1.186 | 0.006873 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B.1.1.189 | 0.003026 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 29777 | G29777A | G | A | 2 | 2 | B.1.1.269 | 0.002706 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.1.284 | 0.000215 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.1.416 | 0.00181 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B.1.1.523 | 0.003125 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.1.71 | 0.012121 |
noncoding | 29777 | G29777A | G | A | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B.1.210 | 0.004264 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.349 | 0.00143 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.351.3 | 0.001753 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.351.5 | 0.001199 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.377 | 0.009132 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.411 | 0.007407 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.438.1 | 0.000215 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.517 | 0.000854 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.568 | 0.002222 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.1.617.1 | 0.000258 |
noncoding | 29777 | G29777C | G | C | 2 | 2 | B.1.630 | 0.010471 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | B.28 | 0.006557 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | B.39 | 0.004662 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | C.1 | 0.004785 |
noncoding | 29777 | G29777A | G | A | 2 | 2 | C.18 | 0.005181 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | C.3 | 0.015267 |
noncoding | 29777 | G29777C | G | C | 2 | 2 | C.36 | 0.001821 |
noncoding | 29777 | G29777C | G | C | 2 | 2 | C.37.1 | 0.005236 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | D.2 | 0.00015 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | P.1.1 | 0.000635 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29777 | G29777T | G | T | 2 | 2 | P.1.17 | 0.000324 |
noncoding | 29777 | G29777- | G | - | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | AY.103 | 0.000006 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.105 | 0.000643 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.107 | 0.000466 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.109 | 0.00074 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.115 | 0.005208 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.116 | 0.000287 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.12 | 0.000316 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.121 | 0.000135 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.29 | 0.000016 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.35 | 0.000233 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | AY.39 | 0.000025 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.39 | 0.000025 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | AY.43 | 0.000004 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.46 | 0.000104 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.46.1 | 0.001027 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.50 | 0.000799 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.51 | 0.000909 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.53 | 0.000288 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.56 | 0.001605 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.65 | 0.000533 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.66 | 0.00107 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.67 | 0.000464 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.74 | 0.000116 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.78 | 0.001541 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.80 | 0.001129 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.86 | 0.00083 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.90 | 0.000684 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | AY.92 | 0.000287 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.135 | 0.004695 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.141 | 0.002012 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.1.176 | 0.000439 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.234 | 0.012048 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.289 | 0.002083 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.3 | 0.008696 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.305 | 0.003861 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.312 | 0.001912 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.326 | 0.001761 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.337 | 0.003597 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.398 | 0.003226 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.407 | 0.041667 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.413 | 0.006897 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.1.420 | 0.001006 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.518 | 0.006329 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.528 | 0.004808 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.54 | 0.003021 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.1.99 | 0.02381 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.1.99 | 0.02381 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.110 | 0.004525 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.139 | 0.000733 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.160.33 | 0.004425 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.12 | 0.000152 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.32 | 0.00135 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.177.4 | 0.000211 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.42 | 0.000894 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.177.43 | 0.001477 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.44 | 0.000519 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.177.44 | 0.000519 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.177.54 | 0.000606 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.177.55 | 0.002331 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.6 | 0.000977 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.177.79 | 0.002342 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.177.82 | 0.000477 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.220 | 0.01087 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.243.2 | 0.014493 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.362 | 0.001541 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.362.2 | 0.004717 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.400 | 0.000429 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.438 | 0.006536 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.466.1 | 0.007194 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.526 | 0.000024 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.549 | 0.007194 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.564 | 0.000426 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.597 | 0.00463 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | B.1.93 | 0.000934 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | B.3.1 | 0.001658 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | C.17 | 0.055556 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | C.36 | 0.000911 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | C.36 | 0.000911 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | C.37 | 0.000116 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | C.37 | 0.000116 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | C.37 | 0.000116 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | D.2 | 0.000075 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | N.3 | 0.005814 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | N.4 | 0.004255 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | N.5 | 0.001767 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29777 | G29777A | G | A | 1 | 1 | P.1.10.1 | 0.00813 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | P.1.16 | 0.000374 |
noncoding | 29777 | G29777T | G | T | 1 | 1 | P.1.8 | 0.004785 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | P.2 | 0.000187 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | Q.2 | 0.000613 |
noncoding | 29777 | G29777C | G | C | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29777 | G29777- | G | - | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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