CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29775 | T29775- | noncoding | T | - | 10624 | 10624 | 1 | 29775-29775 | |
noncoding | 29775 | T29775C | noncoding | T | C | 643 | 643 | 1 | 29775-29775 | |
noncoding | 29775 | T29775A | noncoding | T | A | 527 | 527 | 1 | 29775-29775 | |
noncoding | 29775 | T29775G | noncoding | T | G | 158 | 158 | 1 | 29775-29775 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29775 | T29775- | T | - | 10624 | 10624 | All | 0.002032 |
noncoding | 29775 | T29775- | T | - | 3705 | 3705 | B.1.525 | 0.41926 |
noncoding | 29775 | T29775- | T | - | 1762 | 1762 | B.1.1.311 | 0.631089 |
noncoding | 29775 | T29775- | T | - | 1623 | 1623 | B.1.1.7 | 0.001453 |
noncoding | 29775 | T29775- | T | - | 1101 | 1101 | AY.4 | 0.001714 |
noncoding | 29775 | T29775C | T | C | 643 | 643 | All | 0.000123 |
noncoding | 29775 | T29775A | T | A | 527 | 527 | All | 0.000101 |
noncoding | 29775 | T29775C | T | C | 388 | 388 | B.1.1.7 | 0.000347 |
noncoding | 29775 | T29775A | T | A | 351 | 351 | AY.25 | 0.002111 |
noncoding | 29775 | T29775- | T | - | 258 | 258 | AY.5 | 0.005327 |
noncoding | 29775 | T29775- | T | - | 223 | 223 | B.1.2 | 0.001964 |
noncoding | 29775 | T29775- | T | - | 161 | 161 | B.1.351 | 0.004786 |
noncoding | 29775 | T29775G | T | G | 158 | 158 | All | 0.00003 |
noncoding | 29775 | T29775- | T | - | 145 | 145 | B.1.617.2 | 0.000546 |
noncoding | 29775 | T29775G | T | G | 129 | 129 | B.1.1.7 | 0.000115 |
noncoding | 29775 | T29775- | T | - | 125 | 125 | B.1.466.1 | 0.899281 |
noncoding | 29775 | T29775- | T | - | 105 | 105 | AY.103 | 0.000652 |
noncoding | 29775 | T29775- | T | - | 96 | 96 | B.1.177 | 0.001264 |
noncoding | 29775 | T29775- | T | - | 85 | 85 | AY.47 | 0.002644 |
noncoding | 29775 | T29775- | T | - | 78 | 78 | AY.25 | 0.000469 |
noncoding | 29775 | T29775- | T | - | 70 | 70 | B.1 | 0.000641 |
noncoding | 29775 | T29775- | T | - | 62 | 62 | AY.3 | 0.000617 |
noncoding | 29775 | T29775A | T | A | 58 | 58 | B.1.1.7 | 0.000052 |
noncoding | 29775 | T29775- | T | - | 57 | 57 | AY.43 | 0.000253 |
noncoding | 29775 | T29775- | T | - | 57 | 57 | B.1.160 | 0.001778 |
noncoding | 29775 | T29775- | T | - | 40 | 40 | B.1.1 | 0.000726 |
noncoding | 29775 | T29775- | T | - | 39 | 39 | AY.44 | 0.000237 |
noncoding | 29775 | T29775- | T | - | 36 | 36 | B.1.1.351 | 0.100559 |
noncoding | 29775 | T29775C | T | C | 34 | 34 | AY.98 | 0.002686 |
noncoding | 29775 | T29775- | T | - | 29 | 29 | P.1 | 0.000457 |
noncoding | 29775 | T29775- | T | - | 28 | 28 | AY.29 | 0.000442 |
noncoding | 29775 | T29775A | T | A | 28 | 28 | B.1.634 | 0.09589 |
noncoding | 29775 | T29775- | T | - | 24 | 24 | B.1.243 | 0.00167 |
noncoding | 29775 | T29775- | T | - | 22 | 22 | B.1.1.368 | 0.067901 |
noncoding | 29775 | T29775C | T | C | 20 | 20 | B.1.617.2 | 0.000075 |
noncoding | 29775 | T29775- | T | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29775 | T29775- | T | - | 18 | 18 | B.1.258 | 0.001198 |
noncoding | 29775 | T29775- | T | - | 18 | 18 | C.37 | 0.002089 |
noncoding | 29775 | T29775- | T | - | 17 | 17 | AY.102 | 0.000451 |
noncoding | 29775 | T29775C | T | C | 17 | 17 | AY.44 | 0.000103 |
noncoding | 29775 | T29775- | T | - | 17 | 17 | B.1.177.56 | 0.011348 |
noncoding | 29775 | T29775- | T | - | 16 | 16 | AY.42 | 0.000644 |
noncoding | 29775 | T29775- | T | - | 15 | 15 | AY.85 | 0.006408 |
noncoding | 29775 | T29775G | T | G | 14 | 14 | AY.4 | 0.000022 |
noncoding | 29775 | T29775C | T | C | 14 | 14 | AY.43 | 0.000062 |
noncoding | 29775 | T29775- | T | - | 13 | 13 | AY.6 | 0.000535 |
noncoding | 29775 | T29775- | T | - | 13 | 13 | AY.61 | 0.001362 |
noncoding | 29775 | T29775- | T | - | 13 | 13 | B.1.221 | 0.000923 |
noncoding | 29775 | T29775- | T | - | 13 | 13 | P.1.16 | 0.004863 |
noncoding | 29775 | T29775- | T | - | 12 | 12 | AY.119 | 0.000424 |
noncoding | 29775 | T29775- | T | - | 12 | 12 | B.1.1.222 | 0.002448 |
noncoding | 29775 | T29775C | T | C | 12 | 12 | B.1.429 | 0.000282 |
noncoding | 29775 | T29775- | T | - | 11 | 11 | AY.100 | 0.000506 |
noncoding | 29775 | T29775- | T | - | 11 | 11 | AY.26 | 0.000311 |
noncoding | 29775 | T29775- | T | - | 11 | 11 | AY.39 | 0.000272 |
noncoding | 29775 | T29775A | T | A | 11 | 11 | B.1.177 | 0.000145 |
noncoding | 29775 | T29775- | T | - | 11 | 11 | B.1.177.86 | 0.002018 |
noncoding | 29775 | T29775C | T | C | 10 | 10 | AY.4 | 0.000016 |
noncoding | 29775 | T29775- | T | - | 10 | 10 | AY.4.2 | 0.000217 |
noncoding | 29775 | T29775- | T | - | 10 | 10 | AY.75.1 | 0.001803 |
noncoding | 29775 | T29775- | T | - | 9 | 9 | B.1.160.14 | 0.019068 |
noncoding | 29775 | T29775C | T | C | 9 | 9 | B.1.2 | 0.000079 |
noncoding | 29775 | T29775- | T | - | 9 | 9 | P.1.17 | 0.001456 |
noncoding | 29775 | T29775C | T | C | 8 | 8 | AY.119 | 0.000282 |
noncoding | 29775 | T29775A | T | A | 8 | 8 | AY.29 | 0.000126 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | AY.45 | 0.000973 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | AY.67 | 0.003714 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | AY.74 | 0.000925 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | AY.98.1 | 0.000387 |
noncoding | 29775 | T29775A | T | A | 8 | 8 | B.1 | 0.000073 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | B.1.1.317 | 0.003294 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | B.1.429 | 0.000188 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | B.1.526 | 0.000188 |
noncoding | 29775 | T29775A | T | A | 8 | 8 | B.1.617.2 | 0.00003 |
noncoding | 29775 | T29775C | T | C | 8 | 8 | C.37 | 0.000929 |
noncoding | 29775 | T29775- | T | - | 8 | 8 | C.37.1 | 0.020942 |
noncoding | 29775 | T29775C | T | C | 7 | 7 | AY.3 | 0.00007 |
noncoding | 29775 | T29775- | T | - | 7 | 7 | AY.34 | 0.000679 |
noncoding | 29775 | T29775- | T | - | 7 | 7 | AY.46.4 | 0.001152 |
noncoding | 29775 | T29775- | T | - | 7 | 7 | B.1.1.28 | 0.002179 |
noncoding | 29775 | T29775C | T | C | 7 | 7 | B.1.1.369 | 0.003124 |
noncoding | 29775 | T29775- | T | - | 7 | 7 | B.1.36.22 | 0.008454 |
noncoding | 29775 | T29775C | T | C | 7 | 7 | B.1.526 | 0.000165 |
noncoding | 29775 | T29775- | T | - | 6 | 6 | AY.118 | 0.000376 |
noncoding | 29775 | T29775- | T | - | 6 | 6 | AY.120 | 0.000223 |
noncoding | 29775 | T29775C | T | C | 6 | 6 | AY.27 | 0.000388 |
noncoding | 29775 | T29775- | T | - | 6 | 6 | B.1.1.214 | 0.000333 |
noncoding | 29775 | T29775- | T | - | 6 | 6 | B.1.1.519 | 0.000238 |
noncoding | 29775 | T29775C | T | C | 6 | 6 | B.1.177 | 0.000079 |
noncoding | 29775 | T29775C | T | C | 5 | 5 | AY.103 | 0.000031 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | AY.117 | 0.000423 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | AY.20 | 0.000194 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | AY.23 | 0.000349 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | AY.54 | 0.000477 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | AY.75 | 0.00028 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | B | 0.000639 |
noncoding | 29775 | T29775C | T | C | 5 | 5 | B.1 | 0.000046 |
noncoding | 29775 | T29775A | T | A | 5 | 5 | B.1.1 | 0.000091 |
noncoding | 29775 | T29775A | T | A | 5 | 5 | B.1.177.33 | 0.008224 |
noncoding | 29775 | T29775C | T | C | 5 | 5 | B.1.351 | 0.000149 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | B.1.36.31 | 0.008757 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | B.1.619 | 0.004355 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | B.1.621 | 0.000443 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | C.1 | 0.011962 |
noncoding | 29775 | T29775- | T | - | 5 | 5 | Q.1 | 0.000632 |
noncoding | 29775 | T29775A | T | A | 4 | 4 | AY.39 | 0.000099 |
noncoding | 29775 | T29775- | T | - | 4 | 4 | AY.95 | 0.003044 |
noncoding | 29775 | T29775- | T | - | 4 | 4 | B.1.1.288 | 0.007663 |
noncoding | 29775 | T29775- | T | - | 4 | 4 | B.1.1.33 | 0.001684 |
noncoding | 29775 | T29775- | T | - | 4 | 4 | B.1.1.464 | 0.005891 |
noncoding | 29775 | T29775- | T | - | 4 | 4 | B.1.36.29 | 0.002069 |
noncoding | 29775 | T29775- | T | - | 4 | 4 | D.2 | 0.0003 |
noncoding | 29775 | T29775- | T | - | 4 | 4 | P.1.12 | 0.001936 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.14 | 0.000264 |
noncoding | 29775 | T29775C | T | C | 3 | 3 | AY.25 | 0.000018 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.30 | 0.001187 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.35 | 0.000699 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.46 | 0.000312 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.70 | 0.000626 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.84 | 0.001312 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.9.2 | 0.00011 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | AY.99.2 | 0.000276 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | B.1.1.1 | 0.00098 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | B.1.1.236 | 0.02069 |
noncoding | 29775 | T29775C | T | C | 3 | 3 | B.1.1.317 | 0.001235 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | B.1.1.428 | 0.028302 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | B.1.1.46 | 0.0131 |
noncoding | 29775 | T29775A | T | A | 3 | 3 | B.1.177.53 | 0.007177 |
noncoding | 29775 | T29775C | T | C | 3 | 3 | B.1.177.86 | 0.00055 |
noncoding | 29775 | T29775C | T | C | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | B.1.258.17 | 0.000312 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | B.1.595 | 0.000783 |
noncoding | 29775 | T29775C | T | C | 3 | 3 | B.1.596 | 0.000261 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | B.1.9.4 | 0.018405 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | C.36 | 0.002732 |
noncoding | 29775 | T29775- | T | - | 3 | 3 | P.1.15 | 0.000697 |
noncoding | 29775 | T29775C | T | C | 3 | 3 | P.1.16 | 0.001122 |
noncoding | 29775 | T29775C | T | C | 3 | 3 | P.1.7 | 0.000958 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | A | 0.000774 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | AY.103 | 0.000012 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.110 | 0.000225 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.12 | 0.000632 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | AY.121 | 0.000271 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | AY.26 | 0.000057 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | AY.29.1 | 0.000441 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | AY.3 | 0.00002 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | AY.4.2 | 0.000043 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.4.2.1 | 0.000298 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.40 | 0.001929 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.46.3 | 0.001867 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.48 | 0.00093 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | AY.5 | 0.000041 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | AY.62 | 0.000871 |
noncoding | 29775 | T29775G | T | G | 2 | 2 | B.1 | 0.000018 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | B.1.1 | 0.000036 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.166 | 0.066667 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | B.1.1.174 | 0.006757 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.279 | 0.002242 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.294 | 0.002532 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.354 | 0.008772 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.37 | 0.000386 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.1.523 | 0.003125 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.177.75 | 0.002081 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | B.1.177.83 | 0.002963 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | B.1.177.86 | 0.000367 |
noncoding | 29775 | T29775G | T | G | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.206 | 0.001631 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.210 | 0.004264 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | B.1.258.3 | 0.00335 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.298 | 0.004228 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | B.1.367 | 0.001585 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.400 | 0.000858 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.416.1 | 0.003125 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.441 | 0.019231 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.460 | 0.035714 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.1.637 | 0.000146 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | B.1.637 | 0.000146 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.31 | 0.007463 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.39 | 0.004662 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | B.40 | 0.000729 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | C.18 | 0.005181 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | C.3 | 0.015267 |
noncoding | 29775 | T29775A | T | A | 2 | 2 | C.36 | 0.001821 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | C.38 | 0.016129 |
noncoding | 29775 | T29775C | T | C | 2 | 2 | P.1 | 0.000032 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | P.1.1 | 0.000635 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 29775 | T29775- | T | - | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AK.2 | 0.045455 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.11 | 0.001339 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.114 | 0.000231 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.114 | 0.000231 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | AY.13 | 0.000161 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.24 | 0.000431 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.36 | 0.000148 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | AY.39 | 0.000025 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | AY.4 | 0.000002 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | AY.43 | 0.000004 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.46 | 0.000104 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.51 | 0.000909 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.56 | 0.001605 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.7.1 | 0.000113 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.70 | 0.000209 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.80 | 0.001129 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.1.1 | 0.000327 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.161 | 0.003534 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.221 | 0.010101 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.229 | 0.005747 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.1.265 | 0.003155 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.1.317 | 0.000412 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.337 | 0.003597 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.413 | 0.006897 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.526 | 0.003546 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.528 | 0.004808 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.54 | 0.003021 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.1.99 | 0.02381 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.110 | 0.004525 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.160.12 | 0.00641 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.160.33 | 0.004425 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.11 | 0.001698 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.12 | 0.000152 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.32 | 0.00135 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.42 | 0.000894 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.44 | 0.000519 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.6 | 0.000977 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | B.1.177.62 | 0.001192 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.177.62 | 0.001192 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.177.65 | 0.000665 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.192 | 0.009259 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.2 | 0.000009 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.258.14 | 0.00098 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.260 | 0.003344 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.281 | 0.021739 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.351.3 | 0.000876 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.351.5 | 0.0006 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.351.5 | 0.0006 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.36.19 | 0.009259 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.362 | 0.001541 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.432 | 0.011236 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.441 | 0.009615 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | B.1.462 | 0.007246 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.462 | 0.007246 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.509 | 0.000866 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.1.9.5 | 0.005682 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | B.3 | 0.000831 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.55 | 0.00295 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29775 | T29775G | T | G | 1 | 1 | C.36 | 0.000911 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | C.36 | 0.000911 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | D.2 | 0.000075 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | K.3 | 0.006173 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | L.3 | 0.003546 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | N.4 | 0.004255 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | N.5 | 0.001767 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | P.2 | 0.000187 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | P.6 | 0.003145 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | Q.1 | 0.000126 |
noncoding | 29775 | T29775A | T | A | 1 | 1 | Q.1 | 0.000126 |
noncoding | 29775 | T29775C | T | C | 1 | 1 | Q.2 | 0.000613 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | Q.2 | 0.000613 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | R.1 | 0.00009 |
noncoding | 29775 | T29775- | T | - | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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