CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29774 & Codon = -

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29774C29774-noncodingC-1123111231129774-29774

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29774C29774-C-1123111231All0.002148
noncoding29774C29774-C-37163716B.1.5250.420505
noncoding29774C29774-C-18461846B.1.1.70.001653
noncoding29774C29774-C-17621762B.1.1.3110.631089
noncoding29774C29774-C-11361136AY.40.001768
noncoding29774C29774-C-260260AY.50.005369
noncoding29774C29774-C-234234B.1.20.00206
noncoding29774C29774-C-172172B.1.3510.005113
noncoding29774C29774-C-165165B.1.617.20.000621
noncoding29774C29774-C-135135AY.1030.000838
noncoding29774C29774-C-125125B.1.466.10.899281
noncoding29774C29774-C-9898B.1.1770.00129
noncoding29774C29774-C-9494D.20.007054
noncoding29774C29774-C-8686AY.470.002675
noncoding29774C29774-C-8383AY.430.000368
noncoding29774C29774-C-7979AY.250.000475
noncoding29774C29774-C-7070B.10.000641
noncoding29774C29774-C-6464AY.30.000637
noncoding29774C29774-C-6262B.1.10.001125
noncoding29774C29774-C-5959B.1.1600.00184
noncoding29774C29774-C-4747AY.440.000286
noncoding29774C29774-C-3636AY.290.000568
noncoding29774C29774-C-3636B.1.1.3510.100559
noncoding29774C29774-C-3636P.10.000567
noncoding29774C29774-C-2727B.1.2430.001879
noncoding29774C29774-C-2222B.1.1.3680.067901
noncoding29774C29774-C-2121AY.1020.000557
noncoding29774C29774-C-2020B.1.2580.001331
noncoding29774C29774-C-1919AY.920.005458
noncoding29774C29774-C-1818C.370.002089
noncoding29774C29774-C-1717AY.5.40.004704
noncoding29774C29774-C-1717B.1.177.560.011348
noncoding29774C29774-C-1616AY.420.000644
noncoding29774C29774-C-1515AY.850.006408
noncoding29774C29774-C-1414AY.60.000576
noncoding29774C29774-C-1313AY.1190.000459
noncoding29774C29774-C-1313AY.260.000368
noncoding29774C29774-C-1313AY.610.001362
noncoding29774C29774-C-1313B.1.2210.000923
noncoding29774C29774-C-1313P.1.160.004863
noncoding29774C29774-C-1212AY.390.000297
noncoding29774C29774-C-1212B.1.1.2220.002448
noncoding29774C29774-C-1111AY.1000.000506
noncoding29774C29774-C-1111AY.4.20.000239
noncoding29774C29774-C-1111B.1.177.860.002018
noncoding29774C29774-C-1010AY.75.10.001803
noncoding29774C29774-C-1010B.1.1.280.003112
noncoding29774C29774-C-99AY.450.001095
noncoding29774C29774-C-99B.1.160.140.019068
noncoding29774C29774-C-99B.1.4290.000212
noncoding29774C29774-C-99P.1.170.001456
noncoding29774C29774-C-88AY.670.003714
noncoding29774C29774-C-88AY.740.000925
noncoding29774C29774-C-88AY.90.000541
noncoding29774C29774-C-88AY.98.10.000387
noncoding29774C29774-C-88B.1.1.3170.003294
noncoding29774C29774-C-88B.1.36.290.004139
noncoding29774C29774-C-88B.1.5260.000188
noncoding29774C29774-C-88C.37.10.020942
noncoding29774C29774-C-77AY.340.000679
noncoding29774C29774-C-77AY.46.40.001152
noncoding29774C29774-C-77B.1.1.5190.000278
noncoding29774C29774-C-77B.1.36.220.008454
noncoding29774C29774-C-77B.1.6210.00062
noncoding29774C29774-C-66AY.1180.000376
noncoding29774C29774-C-66AY.1200.000223
noncoding29774C29774-C-66AY.230.000418
noncoding29774C29774-C-66AY.750.000336
noncoding29774C29774-C-66B.1.1.2140.000333
noncoding29774C29774-C-66B.1.36.310.010508
noncoding29774C29774-C-55AY.1170.000423
noncoding29774C29774-C-55AY.140.00044
noncoding29774C29774-C-55AY.200.000194
noncoding29774C29774-C-55AY.540.000477
noncoding29774C29774-C-55AY.980.000395
noncoding29774C29774-C-55B0.000639
noncoding29774C29774-C-55B.1.258.170.00052
noncoding29774C29774-C-55B.1.6190.004355
noncoding29774C29774-C-55C.10.011962
noncoding29774C29774-C-55Q.10.000632
noncoding29774C29774-C-44AY.460.000416
noncoding29774C29774-C-44AY.9.20.000147
noncoding29774C29774-C-44AY.950.003044
noncoding29774C29774-C-44B.1.1.2880.007663
noncoding29774C29774-C-44B.1.1.330.001684
noncoding29774C29774-C-44B.1.1.4640.005891
noncoding29774C29774-C-44B.1.1040.01476
noncoding29774C29774-C-44B.1.160.330.017699
noncoding29774C29774-C-44B.1.5750.001214
noncoding29774C29774-C-44P.1.120.001936
noncoding29774C29774-C-33AY.1090.002219
noncoding29774C29774-C-33AY.120.000948
noncoding29774C29774-C-33AY.3.10.000256
noncoding29774C29774-C-33AY.300.001187
noncoding29774C29774-C-33AY.350.000699
noncoding29774C29774-C-33AY.590.001589
noncoding29774C29774-C-33AY.700.000626
noncoding29774C29774-C-33AY.840.001312
noncoding29774C29774-C-33AY.99.20.000276
noncoding29774C29774-C-33B.1.1.10.00098
noncoding29774C29774-C-33B.1.1.2360.02069
noncoding29774C29774-C-33B.1.1.4280.028302
noncoding29774C29774-C-33B.1.1.460.0131
noncoding29774C29774-C-33B.1.2400.000647
noncoding29774C29774-C-33B.1.5950.000783
noncoding29774C29774-C-33B.1.9.40.018405
noncoding29774C29774-C-33C.360.002732
noncoding29774C29774-C-33P.1.150.000697
noncoding29774C29774-C-22A0.000774
noncoding29774C29774-C-22AY.1100.000225
noncoding29774C29774-C-22AY.1140.000462
noncoding29774C29774-C-22AY.4.2.10.000298
noncoding29774C29774-C-22AY.400.001929
noncoding29774C29774-C-22AY.46.30.001867
noncoding29774C29774-C-22AY.480.00093
noncoding29774C29774-C-22AY.5.30.000675
noncoding29774C29774-C-22AY.620.000871
noncoding29774C29774-C-22B.1.1.1660.066667
noncoding29774C29774-C-22B.1.1.250.001137
noncoding29774C29774-C-22B.1.1.2790.002242
noncoding29774C29774-C-22B.1.1.2940.002532
noncoding29774C29774-C-22B.1.1.3060.000877
noncoding29774C29774-C-22B.1.1.3480.001592
noncoding29774C29774-C-22B.1.1.3540.008772
noncoding29774C29774-C-22B.1.1.370.000386
noncoding29774C29774-C-22B.1.1.4320.002532
noncoding29774C29774-C-22B.1.1.5230.003125
noncoding29774C29774-C-22B.1.177.120.000303
noncoding29774C29774-C-22B.1.177.750.002081
noncoding29774C29774-C-22B.1.2060.001631
noncoding29774C29774-C-22B.1.2100.004264
noncoding29774C29774-C-22B.1.2980.004228
noncoding29774C29774-C-22B.1.4000.000858
noncoding29774C29774-C-22B.1.416.10.003125
noncoding29774C29774-C-22B.1.4410.019231
noncoding29774C29774-C-22B.1.4600.035714
noncoding29774C29774-C-22B.1.5960.000174
noncoding29774C29774-C-22B.1.6370.000146
noncoding29774C29774-C-22B.310.007463
noncoding29774C29774-C-22B.390.004662
noncoding29774C29774-C-22B.400.000729
noncoding29774C29774-C-22C.30.015267
noncoding29774C29774-C-22C.380.016129
noncoding29774C29774-C-22P.1.10.000635
noncoding29774C29774-C-22P.1.140.000096
noncoding29774C29774-C-22P.1.70.000639
noncoding29774C29774-C-22R.10.00018
noncoding29774C29774-C-11A.2.50.000499
noncoding29774C29774-C-11AD.20.000219
noncoding29774C29774-C-11AK.20.045455
noncoding29774C29774-C-11AY.1060.000335
noncoding29774C29774-C-11AY.1110.000183
noncoding29774C29774-C-11AY.1130.000142
noncoding29774C29774-C-11AY.130.000161
noncoding29774C29774-C-11AY.160.00038
noncoding29774C29774-C-11AY.16.10.00047
noncoding29774C29774-C-11AY.240.000431
noncoding29774C29774-C-11AY.29.10.000221
noncoding29774C29774-C-11AY.330.000067
noncoding29774C29774-C-11AY.360.000148
noncoding29774C29774-C-11AY.39.10.00004
noncoding29774C29774-C-11AY.4.50.000107
noncoding29774C29774-C-11AY.46.60.000072
noncoding29774C29774-C-11AY.510.000909
noncoding29774C29774-C-11AY.560.001605
noncoding29774C29774-C-11AY.70.000196
noncoding29774C29774-C-11AY.800.001129
noncoding29774C29774-C-11AY.810.001992
noncoding29774C29774-C-11AY.870.000833
noncoding29774C29774-C-11AY.9.10.000084
noncoding29774C29774-C-11B.1.1.100.001115
noncoding29774C29774-C-11B.1.1.1610.003534
noncoding29774C29774-C-11B.1.1.1700.001247
noncoding29774C29774-C-11B.1.1.1740.003378
noncoding29774C29774-C-11B.1.1.1970.037037
noncoding29774C29774-C-11B.1.1.2180.007692
noncoding29774C29774-C-11B.1.1.2210.010101
noncoding29774C29774-C-11B.1.1.2290.005747
noncoding29774C29774-C-11B.1.1.2740.005051
noncoding29774C29774-C-11B.1.1.2770.000759
noncoding29774C29774-C-11B.1.1.3370.003597
noncoding29774C29774-C-11B.1.1.390.00051
noncoding29774C29774-C-11B.1.1.4090.002833
noncoding29774C29774-C-11B.1.1.4130.006897
noncoding29774C29774-C-11B.1.1.500.000679
noncoding29774C29774-C-11B.1.1.5260.003546
noncoding29774C29774-C-11B.1.1.5280.004808
noncoding29774C29774-C-11B.1.1.540.003021
noncoding29774C29774-C-11B.1.1.700.000341
noncoding29774C29774-C-11B.1.1.990.02381
noncoding29774C29774-C-11B.1.1100.004525
noncoding29774C29774-C-11B.1.1110.001175
noncoding29774C29774-C-11B.1.177.110.001698
noncoding29774C29774-C-11B.1.177.320.00135
noncoding29774C29774-C-11B.1.177.330.001645
noncoding29774C29774-C-11B.1.177.420.000894
noncoding29774C29774-C-11B.1.177.440.000519
noncoding29774C29774-C-11B.1.177.570.000281
noncoding29774C29774-C-11B.1.177.60.000977
noncoding29774C29774-C-11B.1.177.810.000189
noncoding29774C29774-C-11B.1.1920.009259
noncoding29774C29774-C-11B.1.2220.001692
noncoding29774C29774-C-11B.1.2340.000132
noncoding29774C29774-C-11B.1.2600.003344
noncoding29774C29774-C-11B.1.2810.021739
noncoding29774C29774-C-11B.1.351.20.000303
noncoding29774C29774-C-11B.1.351.30.000876
noncoding29774C29774-C-11B.1.351.50.0006
noncoding29774C29774-C-11B.1.360.000146
noncoding29774C29774-C-11B.1.36.190.009259
noncoding29774C29774-C-11B.1.36.80.001
noncoding29774C29774-C-11B.1.3620.001541
noncoding29774C29774-C-11B.1.3670.000792
noncoding29774C29774-C-11B.1.4160.001269
noncoding29774C29774-C-11B.1.4270.00005
noncoding29774C29774-C-11B.1.4620.007246
noncoding29774C29774-C-11B.1.5060.02381
noncoding29774C29774-C-11B.1.5090.000866
noncoding29774C29774-C-11B.1.5760.000907
noncoding29774C29774-C-11B.1.5820.000491
noncoding29774C29774-C-11B.1.617.10.000129
noncoding29774C29774-C-11B.1.617.30.002985
noncoding29774C29774-C-11B.1.6300.005236
noncoding29774C29774-C-11B.1.9.50.005682
noncoding29774C29774-C-11B.550.00295
noncoding29774C29774-C-11B.60.00091
noncoding29774C29774-C-11C.36.30.000567
noncoding29774C29774-C-11K.30.006173
noncoding29774C29774-C-11L.30.003546
noncoding29774C29774-C-11N.40.004255
noncoding29774C29774-C-11N.50.001767
noncoding29774C29774-C-11P.1.100.000269
noncoding29774C29774-C-11P.20.000187
noncoding29774C29774-C-11P.60.003145
noncoding29774C29774-C-11Q.20.000613
noncoding29774C29774-C-11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.