CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29772

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29772T29772-noncodingT-1292912929129772-29772
noncoding29772T29772CnoncodingTC13471347129772-29772
noncoding29772T29772AnoncodingTA244244129772-29772
noncoding29772T29772GnoncodingTG3636129772-29772

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29772T29772-T-1292912929All0.002473
noncoding29772T29772-T-37173717B.1.5250.420618
noncoding29772T29772-T-23082308B.1.1.70.002066
noncoding29772T29772-T-17621762B.1.1.3110.631089
noncoding29772T29772CTC13471347All0.000258
noncoding29772T29772-T-13271327AY.40.002065
noncoding29772T29772-T-794794AY.380.396405
noncoding29772T29772CTC761761B.1.617.20.002865
noncoding29772T29772CTC378378B.1.1.70.000338
noncoding29772T29772-T-268268AY.50.005534
noncoding29772T29772-T-247247B.1.20.002175
noncoding29772T29772ATA244244All0.000047
noncoding29772T29772-T-181181B.1.3510.00538
noncoding29772T29772-T-175175B.1.617.20.000659
noncoding29772T29772-T-142142AY.1030.000882
noncoding29772T29772-T-129129B.10.001182
noncoding29772T29772-T-125125B.1.466.10.899281
noncoding29772T29772-T-119119B.1.1770.001567
noncoding29772T29772ATA9696AY.380.047928
noncoding29772T29772-T-8787AY.430.000385
noncoding29772T29772-T-8686AY.470.002675
noncoding29772T29772-T-8282AY.250.000493
noncoding29772T29772-T-6969B.1.1600.002152
noncoding29772T29772-T-6767B.1.10.001215
noncoding29772T29772-T-6666AY.30.000656
noncoding29772T29772ATA5555B.1.1.70.000049
noncoding29772T29772-T-4545AY.440.000274
noncoding29772T29772-T-4343B.1.2430.002992
noncoding29772T29772-T-3838C.370.00441
noncoding29772T29772-T-3838P.10.000599
noncoding29772T29772-T-3737AY.290.000584
noncoding29772T29772GTG3636All0.000007
noncoding29772T29772-T-3636B.1.1.3510.100559
noncoding29772T29772CTC3232AY.40.00005
noncoding29772T29772CTC3131AY.140.002728
noncoding29772T29772-T-2323AY.1020.00061
noncoding29772T29772-T-2222B.1.1.3680.067901
noncoding29772T29772-T-2222B.1.2580.001464
noncoding29772T29772-T-1919AY.420.000764
noncoding29772T29772-T-1919AY.920.005458
noncoding29772T29772ATA1919B.1.1600.000593
noncoding29772T29772CTC1818AY.610.001886
noncoding29772T29772-T-1717AY.5.40.004704
noncoding29772T29772-T-1717B.1.177.560.011348
noncoding29772T29772-T-1616AY.60.000658
noncoding29772T29772-T-1616B.1.2210.001137
noncoding29772T29772-T-1515AY.260.000425
noncoding29772T29772-T-1414AY.390.000346
noncoding29772T29772-T-1414AY.610.001467
noncoding29772T29772-T-1414B.1.4040.018229
noncoding29772T29772-T-1313AY.1190.000459
noncoding29772T29772-T-1313AY.75.10.002344
noncoding29772T29772-T-1313B.1.1.2220.002652
noncoding29772T29772-T-1313B.1.1.4200.013078
noncoding29772T29772-T-1313P.1.160.004863
noncoding29772T29772-T-1212B.1.4290.000282
noncoding29772T29772-T-1111AY.1000.000506
noncoding29772T29772-T-1111AY.1180.000689
noncoding29772T29772-T-1111AY.4.20.000239
noncoding29772T29772CTC1111AY.700.002294
noncoding29772T29772-T-1111AY.98.10.000533
noncoding29772T29772-T-1111B.1.1.280.003424
noncoding29772T29772GTG1111B.1.1.70.00001
noncoding29772T29772-T-1111B.1.177.860.002018
noncoding29772T29772-T-1111B.1.360.001605
noncoding29772T29772-T-1111B.1.5260.000259
noncoding29772T29772-T-1010AY.740.001156
noncoding29772T29772-T-1010AY.90.000676
noncoding29772T29772-T-1010B.1.5960.000871
noncoding29772T29772ATA99AY.40.000014
noncoding29772T29772ATA99AY.440.000055
noncoding29772T29772GTG99B.10.000082
noncoding29772T29772-T-99B.1.160.140.019068
noncoding29772T29772-T-99P.1.170.001456
noncoding29772T29772-T-88AY.1170.000676
noncoding29772T29772-T-88AY.450.000973
noncoding29772T29772-T-88AY.670.003714
noncoding29772T29772-T-88AY.750.000448
noncoding29772T29772-T-88AY.850.003417
noncoding29772T29772-T-88B.1.1.3170.003294
noncoding29772T29772-T-88B.1.36.290.004139
noncoding29772T29772-T-88C.37.10.020942
noncoding29772T29772CTC77AY.1000.000322
noncoding29772T29772-T-77AY.340.000679
noncoding29772T29772-T-77AY.460.000729
noncoding29772T29772-T-77AY.46.40.001152
noncoding29772T29772-T-77B.1.1.5190.000278
noncoding29772T29772-T-77B.1.2340.000924
noncoding29772T29772-T-77B.1.36.220.008454
noncoding29772T29772CTC77B.1.5250.000792
noncoding29772T29772-T-77B.1.6210.00062
noncoding29772T29772-T-66AY.230.000418
noncoding29772T29772CTC66AY.400.005786
noncoding29772T29772-T-66AY.980.000474
noncoding29772T29772-T-66B.1.1.2140.000333
noncoding29772T29772CTC66B.1.20.000053
noncoding29772T29772-T-66B.1.36.310.010508
noncoding29772T29772-T-55AY.1140.001156
noncoding29772T29772-T-55AY.1200.000186
noncoding29772T29772-T-55AY.140.00044
noncoding29772T29772-T-55AY.200.000194
noncoding29772T29772-T-55AY.540.000477
noncoding29772T29772-T-55AY.9.20.000184
noncoding29772T29772-T-55B0.000639
noncoding29772T29772CTC55B.1.1770.000066
noncoding29772T29772-T-55B.1.258.170.00052
noncoding29772T29772-T-55B.1.5750.001517
noncoding29772T29772ATA55B.1.5760.004533
noncoding29772T29772ATA55B.1.617.20.000019
noncoding29772T29772-T-55B.1.6190.004355
noncoding29772T29772-T-55P.1.120.00242
noncoding29772T29772-T-55Q.10.000632
noncoding29772T29772CTC44AY.1030.000025
noncoding29772T29772-T-44AY.690.000747
noncoding29772T29772-T-44AY.950.003044
noncoding29772T29772-T-44B.1.1.10.001307
noncoding29772T29772-T-44B.1.1.1700.004988
noncoding29772T29772-T-44B.1.1.2880.007663
noncoding29772T29772-T-44B.1.1.330.001684
noncoding29772T29772-T-44B.1.1.4640.005891
noncoding29772T29772ATA44B.1.1.5190.000159
noncoding29772T29772-T-44B.1.1.5280.019231
noncoding29772T29772-T-44B.1.1040.01476
noncoding29772T29772-T-44B.1.160.330.017699
noncoding29772T29772CTC44B.1.2210.000284
noncoding29772T29772-T-44B.1.2400.000862
noncoding29772T29772ATA44B.1.5250.000453
noncoding29772T29772-T-44B.1.6090.001918
noncoding29772T29772CTC44B.1.6180.016129
noncoding29772T29772-T-44C.10.009569
noncoding29772T29772-T-44D.20.0003
noncoding29772T29772CTC44P.10.000063
noncoding29772T29772-T-44P.1.140.000191
noncoding29772T29772-T-33AY.1090.002219
noncoding29772T29772-T-33AY.120.000948
noncoding29772T29772-T-33AY.3.10.000256
noncoding29772T29772-T-33AY.300.001187
noncoding29772T29772ATA33AY.430.000013
noncoding29772T29772CTC33AY.580.002722
noncoding29772T29772-T-33AY.590.001589
noncoding29772T29772-T-33AY.650.001599
noncoding29772T29772GTG33AY.700.000626
noncoding29772T29772-T-33AY.700.000626
noncoding29772T29772-T-33AY.840.001312
noncoding29772T29772-T-33AY.99.20.000276
noncoding29772T29772CTC33B.10.000027
noncoding29772T29772-T-33B.1.1.2360.02069
noncoding29772T29772-T-33B.1.1.4280.028302
noncoding29772T29772-T-33B.1.1.4320.003797
noncoding29772T29772-T-33B.1.1.460.0131
noncoding29772T29772CTC33B.1.177.670.022901
noncoding29772T29772-T-33B.1.214.20.001799
noncoding29772T29772-T-33B.1.2980.006342
noncoding29772T29772GTG33B.1.3510.000089
noncoding29772T29772-T-33B.1.36.160.004274
noncoding29772T29772-T-33B.1.5820.001472
noncoding29772T29772-T-33B.1.5950.000783
noncoding29772T29772-T-33B.1.6370.000219
noncoding29772T29772-T-33B.1.9.40.018405
noncoding29772T29772-T-33C.360.002732
noncoding29772T29772CTC33C.360.002732
noncoding29772T29772-T-33P.1.150.000697
noncoding29772T29772CTC33P.1.160.001122
noncoding29772T29772-T-22A0.000774
noncoding29772T29772-T-22A.2.50.000998
noncoding29772T29772-T-22AY.1100.000225
noncoding29772T29772ATA22AY.250.000012
noncoding29772T29772CTC22AY.250.000012
noncoding29772T29772CTC22AY.3.10.000171
noncoding29772T29772-T-22AY.330.000134
noncoding29772T29772ATA22AY.330.000134
noncoding29772T29772-T-22AY.350.000466
noncoding29772T29772ATA22AY.390.000049
noncoding29772T29772-T-22AY.400.001929
noncoding29772T29772CTC22AY.430.000009
noncoding29772T29772CTC22AY.440.000012
noncoding29772T29772-T-22AY.46.30.001867
noncoding29772T29772-T-22AY.46.60.000144
noncoding29772T29772-T-22AY.5.30.000675
noncoding29772T29772-T-22AY.560.00321
noncoding29772T29772-T-22AY.620.000871
noncoding29772T29772CTC22AY.90.000135
noncoding29772T29772CTC22AY.9.10.000167
noncoding29772T29772CTC22AY.980.000158
noncoding29772T29772-T-22AZ.20.001642
noncoding29772T29772ATA22B.1.10.000036
noncoding29772T29772CTC22B.1.1.1890.003026
noncoding29772T29772ATA22B.1.1.2220.000408
noncoding29772T29772-T-22B.1.1.250.001137
noncoding29772T29772-T-22B.1.1.2790.002242
noncoding29772T29772-T-22B.1.1.2940.002532
noncoding29772T29772-T-22B.1.1.3060.000877
noncoding29772T29772-T-22B.1.1.3480.001592
noncoding29772T29772-T-22B.1.1.3540.008772
noncoding29772T29772-T-22B.1.1.370.000386
noncoding29772T29772-T-22B.1.1.390.001019
noncoding29772T29772CTC22B.1.1.5190.000079
noncoding29772T29772-T-22B.1.1.5230.003125
noncoding29772T29772-T-22B.1.177.120.000303
noncoding29772T29772-T-22B.1.177.440.001038
noncoding29772T29772-T-22B.1.177.750.002081
noncoding29772T29772-T-22B.1.2060.001631
noncoding29772T29772-T-22B.1.2100.004264
noncoding29772T29772-T-22B.1.2410.001623
noncoding29772T29772-T-22B.1.258.30.00335
noncoding29772T29772CTC22B.1.3510.000059
noncoding29772T29772-T-22B.1.36.80.002
noncoding29772T29772-T-22B.1.4000.000858
noncoding29772T29772-T-22B.1.416.10.003125
noncoding29772T29772-T-22B.1.4270.000101
noncoding29772T29772-T-22B.1.4410.019231
noncoding29772T29772-T-22B.1.4600.035714
noncoding29772T29772ATA22B.1.4970.00063
noncoding29772T29772ATA22B.1.5260.000047
noncoding29772T29772-T-22B.1.564.10.003155
noncoding29772T29772CTC22B.1.617.10.000258
noncoding29772T29772GTG22B.1.617.20.000008
noncoding29772T29772CTC22B.1.6360.013423
noncoding29772T29772-T-22B.310.007463
noncoding29772T29772-T-22B.390.004662
noncoding29772T29772-T-22B.400.000729
noncoding29772T29772-T-22B.60.00182
noncoding29772T29772-T-22C.30.015267
noncoding29772T29772ATA22C.370.000232
noncoding29772T29772-T-22C.380.016129
noncoding29772T29772-T-22P.1.10.000635
noncoding29772T29772-T-22P.1.70.000639
noncoding29772T29772-T-22R.10.00018
noncoding29772T29772-T-11AD.20.000219
noncoding29772T29772-T-11AK.20.045455
noncoding29772T29772-T-11AY.100.00053
noncoding29772T29772ATA11AY.1000.000046
noncoding29772T29772CTC11AY.1020.000027
noncoding29772T29772ATA11AY.1030.000006
noncoding29772T29772-T-11AY.1060.000335
noncoding29772T29772-T-11AY.1110.000183
noncoding29772T29772CTC11AY.1170.000085
noncoding29772T29772CTC11AY.1200.000037
noncoding29772T29772-T-11AY.130.000161
noncoding29772T29772-T-11AY.160.00038
noncoding29772T29772CTC11AY.16.10.00047
noncoding29772T29772CTC11AY.230.00007
noncoding29772T29772-T-11AY.240.000431
noncoding29772T29772ATA11AY.290.000016
noncoding29772T29772CTC11AY.290.000016
noncoding29772T29772-T-11AY.29.10.000221
noncoding29772T29772CTC11AY.340.000097
noncoding29772T29772-T-11AY.360.000148
noncoding29772T29772-T-11AY.39.10.00004
noncoding29772T29772GTG11AY.40.000002
noncoding29772T29772-T-11AY.4.2.10.000149
noncoding29772T29772-T-11AY.4.50.000107
noncoding29772T29772GTG11AY.440.000006
noncoding29772T29772ATA11AY.470.000031
noncoding29772T29772-T-11AY.480.000465
noncoding29772T29772-T-11AY.510.000909
noncoding29772T29772-T-11AY.520.000814
noncoding29772T29772CTC11AY.60.000041
noncoding29772T29772CTC11AY.600.000938
noncoding29772T29772ATA11AY.620.000436
noncoding29772T29772-T-11AY.70.000196
noncoding29772T29772CTC11AY.7.10.000113
noncoding29772T29772ATA11AY.750.000056
noncoding29772T29772CTC11AY.75.10.00018
noncoding29772T29772-T-11AY.800.001129
noncoding29772T29772-T-11AY.810.001992
noncoding29772T29772-T-11AY.870.000833
noncoding29772T29772-T-11AY.9.10.000084
noncoding29772T29772CTC11AY.99.10.001553
noncoding29772T29772CTC11B0.000128
noncoding29772T29772ATA11B.10.000009
noncoding29772T29772CTC11B.1.10.000018
noncoding29772T29772-T-11B.1.1.100.001115
noncoding29772T29772-T-11B.1.1.1610.003534
noncoding29772T29772-T-11B.1.1.1660.033333
noncoding29772T29772-T-11B.1.1.1740.003378
noncoding29772T29772-T-11B.1.1.1970.037037
noncoding29772T29772-T-11B.1.1.2180.007692
noncoding29772T29772-T-11B.1.1.2210.010101
noncoding29772T29772-T-11B.1.1.2290.005747
noncoding29772T29772CTC11B.1.1.270.00565
noncoding29772T29772-T-11B.1.1.2740.005051
noncoding29772T29772-T-11B.1.1.2770.000759
noncoding29772T29772-T-11B.1.1.2860.002899
noncoding29772T29772-T-11B.1.1.3370.003597
noncoding29772T29772-T-11B.1.1.4090.002833
noncoding29772T29772-T-11B.1.1.4130.006897
noncoding29772T29772-T-11B.1.1.500.000679
noncoding29772T29772-T-11B.1.1.5260.003546
noncoding29772T29772-T-11B.1.1.540.003021
noncoding29772T29772-T-11B.1.1.700.000341
noncoding29772T29772-T-11B.1.1.990.02381
noncoding29772T29772-T-11B.1.1100.004525
noncoding29772T29772-T-11B.1.1110.001175
noncoding29772T29772CTC11B.1.1600.000031
noncoding29772T29772-T-11B.1.160.320.004292
noncoding29772T29772ATA11B.1.1770.000013
noncoding29772T29772-T-11B.1.177.110.001698
noncoding29772T29772CTC11B.1.177.210.000076
noncoding29772T29772-T-11B.1.177.320.00135
noncoding29772T29772-T-11B.1.177.330.001645
noncoding29772T29772-T-11B.1.177.40.000211
noncoding29772T29772-T-11B.1.177.420.000894
noncoding29772T29772-T-11B.1.177.540.000606
noncoding29772T29772-T-11B.1.177.570.000281
noncoding29772T29772-T-11B.1.177.60.000977
noncoding29772T29772CTC11B.1.177.620.001192
noncoding29772T29772ATA11B.1.177.620.001192
noncoding29772T29772ATA11B.1.177.630.002703
noncoding29772T29772CTC11B.1.177.650.000665
noncoding29772T29772-T-11B.1.177.810.000189
noncoding29772T29772CTC11B.1.177.860.000183
noncoding29772T29772GTG11B.1.177.860.000183
noncoding29772T29772GTG11B.1.177.90.001332
noncoding29772T29772-T-11B.1.1920.009259
noncoding29772T29772ATA11B.1.2210.000071
noncoding29772T29772CTC11B.1.221.20.004016
noncoding29772T29772-T-11B.1.2220.001692
noncoding29772T29772-T-11B.1.258.240.010753
noncoding29772T29772-T-11B.1.2600.003344
noncoding29772T29772ATA11B.1.2790.000514
noncoding29772T29772-T-11B.1.2810.021739
noncoding29772T29772-T-11B.1.3290.000608
noncoding29772T29772ATA11B.1.3510.00003
noncoding29772T29772-T-11B.1.351.20.000303
noncoding29772T29772-T-11B.1.351.30.000876
noncoding29772T29772-T-11B.1.351.50.0006
noncoding29772T29772ATA11B.1.360.000146
noncoding29772T29772ATA11B.1.36.10.00114
noncoding29772T29772-T-11B.1.36.190.009259
noncoding29772T29772-T-11B.1.3620.001541
noncoding29772T29772-T-11B.1.3670.000792
noncoding29772T29772GTG11B.1.4000.000429
noncoding29772T29772CTC11B.1.4110.003704
noncoding29772T29772CTC11B.1.4160.001269
noncoding29772T29772-T-11B.1.4160.001269
noncoding29772T29772ATA11B.1.4270.00005
noncoding29772T29772GTG11B.1.4290.000024
noncoding29772T29772-T-11B.1.4620.007246
noncoding29772T29772-T-11B.1.4700.001404
noncoding29772T29772-T-11B.1.5060.02381
noncoding29772T29772-T-11B.1.5090.000866
noncoding29772T29772ATA11B.1.5610.000397
noncoding29772T29772-T-11B.1.5650.00081
noncoding29772T29772-T-11B.1.5760.000907
noncoding29772T29772GTG11B.1.5950.000261
noncoding29772T29772-T-11B.1.595.10.005848
noncoding29772T29772ATA11B.1.5960.000087
noncoding29772T29772CTC11B.1.5990.00365
noncoding29772T29772-T-11B.1.617.10.000129
noncoding29772T29772-T-11B.1.617.30.002985
noncoding29772T29772CTC11B.1.6190.000871
noncoding29772T29772-T-11B.1.619.10.000641
noncoding29772T29772-T-11B.1.6300.005236
noncoding29772T29772-T-11B.1.9.50.005682
noncoding29772T29772-T-11B.550.00295
noncoding29772T29772-T-11C.350.000774
noncoding29772T29772GTG11C.360.000911
noncoding29772T29772CTC11C.36.30.000567
noncoding29772T29772-T-11C.36.30.000567
noncoding29772T29772CTC11D.20.000075
noncoding29772T29772-T-11K.30.006173
noncoding29772T29772-T-11L.30.003546
noncoding29772T29772-T-11N.40.004255
noncoding29772T29772-T-11N.50.001767
noncoding29772T29772CTC11N.60.007092
noncoding29772T29772ATA11P.1.10.000318
noncoding29772T29772CTC11P.1.10.000318
noncoding29772T29772-T-11P.1.100.000269
noncoding29772T29772-T-11P.20.000187
noncoding29772T29772-T-11P.60.003145
noncoding29772T29772CTC11Q.10.000126
noncoding29772T29772-T-11Q.20.000613
noncoding29772T29772-T-11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.