CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29771 & Codon = G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29771A29771GnoncodingAG69026902129771-29771

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29771A29771GAG69026902All0.00132
noncoding29771A29771GAG44314431AD.20.970221
noncoding29771A29771GAG12761276B.1.617.20.004805
noncoding29771A29771GAG321321B.1.1.70.000287
noncoding29771A29771GAG240240AD.10.987654
noncoding29771A29771GAG103103B.1.1.3150.872881
noncoding29771A29771GAG5757AY.16.10.026786
noncoding29771A29771GAG5454AY.590.028602
noncoding29771A29771GAG4646AY.430.000204
noncoding29771A29771GAG3535AY.50.000723
noncoding29771A29771GAG3131B0.003962
noncoding29771A29771GAG2828B.10.000256
noncoding29771A29771GAG2525AY.250.00015
noncoding29771A29771GAG2525AY.440.000152
noncoding29771A29771GAG1919AY.230.001325
noncoding29771A29771GAG1212AY.40.000019
noncoding29771A29771GAG1010AD.2.10.454545
noncoding29771A29771GAG1010AY.1000.00046
noncoding29771A29771GAG1010AY.4.2.10.00149
noncoding29771A29771GAG99B.1.20.000079
noncoding29771A29771GAG88B.1.10.000145
noncoding29771A29771GAG77AY.1030.000043
noncoding29771A29771GAG77AY.1080.007718
noncoding29771A29771GAG77AY.1190.000247
noncoding29771A29771GAG77AY.840.003062
noncoding29771A29771GAG66AY.480.002791
noncoding29771A29771GAG66B.1.1770.000079
noncoding29771A29771GAG66B.1.5250.000679
noncoding29771A29771GAG55AY.200.000194
noncoding29771A29771GAG55AY.9.20.000184
noncoding29771A29771GAG55B.1.3510.000149
noncoding29771A29771GAG44AY.470.000124
noncoding29771A29771GAG44AY.550.00367
noncoding29771A29771GAG44AY.680.001095
noncoding29771A29771GAG44B.1.1.1890.006051
noncoding29771A29771GAG44B.1.4160.005076
noncoding29771A29771GAG33AY.1100.000338
noncoding29771A29771GAG33AY.1210.000406
noncoding29771A29771GAG33AY.380.001498
noncoding29771A29771GAG33AY.390.000074
noncoding29771A29771GAG33AY.610.000314
noncoding29771A29771GAG33B.1.1600.000094
noncoding29771A29771GAG33B.1.6210.000266
noncoding29771A29771GAG22AP.10.003003
noncoding29771A29771GAG22AY.1020.000053
noncoding29771A29771GAG22AY.1070.000932
noncoding29771A29771GAG22AY.350.000466
noncoding29771A29771GAG22AY.540.000191
noncoding29771A29771GAG22AY.75.10.000361
noncoding29771A29771GAG22B.1.1.3110.000716
noncoding29771A29771GAG11A.2.20.001689
noncoding29771A29771GAG11AA.50.016129
noncoding29771A29771GAG11AY.1010.00049
noncoding29771A29771GAG11AY.140.000088
noncoding29771A29771GAG11AY.190.00114
noncoding29771A29771GAG11AY.330.000067
noncoding29771A29771GAG11AY.420.00004
noncoding29771A29771GAG11AY.450.000122
noncoding29771A29771GAG11AY.5.40.000277
noncoding29771A29771GAG11AY.510.000909
noncoding29771A29771GAG11AY.520.000814
noncoding29771A29771GAG11AY.560.001605
noncoding29771A29771GAG11AY.710.000475
noncoding29771A29771GAG11AY.750.000056
noncoding29771A29771GAG11AY.870.000833
noncoding29771A29771GAG11AY.950.000761
noncoding29771A29771GAG11AY.980.000079
noncoding29771A29771GAG11AY.99.20.000092
noncoding29771A29771GAG11B.1.1.250.000569
noncoding29771A29771GAG11B.1.1.2530.002506
noncoding29771A29771GAG11B.1.1.280.000311
noncoding29771A29771GAG11B.1.1.370.000193
noncoding29771A29771GAG11B.1.1.4090.002833
noncoding29771A29771GAG11B.1.1.5190.00004
noncoding29771A29771GAG11B.1.177.100.000878
noncoding29771A29771GAG11B.1.177.190.001431
noncoding29771A29771GAG11B.1.177.860.000183
noncoding29771A29771GAG11B.1.2400.000216
noncoding29771A29771GAG11B.1.2430.00007
noncoding29771A29771GAG11B.1.360.000146
noncoding29771A29771GAG11B.1.3890.001002
noncoding29771A29771GAG11B.1.5610.000397
noncoding29771A29771GAG11C.290.0625
noncoding29771A29771GAG11C.370.000116
noncoding29771A29771GAG11P.10.000016
noncoding29771A29771GAG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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