CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29770
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 29770 | A29770- | noncoding | A | - | 13138 | 13138 | 1 | 29770-29770 | |
| noncoding | 29770 | A29770T | noncoding | A | T | 541 | 541 | 1 | 29770-29770 | |
| noncoding | 29770 | A29770G | noncoding | A | G | 398 | 398 | 1 | 29770-29770 | |
| noncoding | 29770 | A29770C | noncoding | A | C | 98 | 98 | 1 | 29770-29770 | |
| noncoding | 29770 | A29770V | noncoding | A | V | 1 | 1 | 1 | 29770-29770 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 29770 | A29770- | A | - | 13138 | 13138 | All | 0.002513 |
| noncoding | 29770 | A29770- | A | - | 3717 | 3717 | B.1.525 | 0.420618 |
| noncoding | 29770 | A29770- | A | - | 2168 | 2168 | B.1.1.7 | 0.001941 |
| noncoding | 29770 | A29770- | A | - | 1762 | 1762 | B.1.1.311 | 0.631089 |
| noncoding | 29770 | A29770- | A | - | 1330 | 1330 | AY.4 | 0.00207 |
| noncoding | 29770 | A29770- | A | - | 794 | 794 | AY.38 | 0.396405 |
| noncoding | 29770 | A29770T | A | T | 541 | 541 | All | 0.000103 |
| noncoding | 29770 | A29770G | A | G | 398 | 398 | All | 0.000076 |
| noncoding | 29770 | A29770- | A | - | 268 | 268 | AY.5 | 0.005534 |
| noncoding | 29770 | A29770- | A | - | 248 | 248 | B.1.2 | 0.002184 |
| noncoding | 29770 | A29770- | A | - | 185 | 185 | B.1.351 | 0.005499 |
| noncoding | 29770 | A29770- | A | - | 175 | 175 | B.1.617.2 | 0.000659 |
| noncoding | 29770 | A29770T | A | T | 159 | 159 | B.1.1.7 | 0.000142 |
| noncoding | 29770 | A29770G | A | G | 154 | 154 | B.1.1.7 | 0.000138 |
| noncoding | 29770 | A29770- | A | - | 142 | 142 | AY.103 | 0.000882 |
| noncoding | 29770 | A29770- | A | - | 139 | 139 | B.1 | 0.001273 |
| noncoding | 29770 | A29770- | A | - | 138 | 138 | B.1.177 | 0.001817 |
| noncoding | 29770 | A29770- | A | - | 125 | 125 | B.1.466.1 | 0.899281 |
| noncoding | 29770 | A29770T | A | T | 122 | 122 | AY.46.4 | 0.020069 |
| noncoding | 29770 | A29770C | A | C | 98 | 98 | All | 0.000019 |
| noncoding | 29770 | A29770- | A | - | 96 | 96 | AY.43 | 0.000425 |
| noncoding | 29770 | A29770- | A | - | 87 | 87 | AY.25 | 0.000523 |
| noncoding | 29770 | A29770- | A | - | 87 | 87 | AY.47 | 0.002706 |
| noncoding | 29770 | A29770- | A | - | 80 | 80 | B.1.160 | 0.002495 |
| noncoding | 29770 | A29770- | A | - | 80 | 80 | B.1.221 | 0.005683 |
| noncoding | 29770 | A29770- | A | - | 67 | 67 | B.1.1 | 0.001215 |
| noncoding | 29770 | A29770- | A | - | 66 | 66 | AY.3 | 0.000656 |
| noncoding | 29770 | A29770C | A | C | 66 | 66 | B.1.1.7 | 0.000059 |
| noncoding | 29770 | A29770- | A | - | 59 | 59 | AY.111 | 0.010806 |
| noncoding | 29770 | A29770- | A | - | 46 | 46 | AY.44 | 0.00028 |
| noncoding | 29770 | A29770- | A | - | 45 | 45 | B.1.243 | 0.003131 |
| noncoding | 29770 | A29770- | A | - | 44 | 44 | B.1.369 | 0.01255 |
| noncoding | 29770 | A29770- | A | - | 42 | 42 | P.1 | 0.000662 |
| noncoding | 29770 | A29770T | A | T | 41 | 41 | B.1.416 | 0.05203 |
| noncoding | 29770 | A29770- | A | - | 41 | 41 | C.37 | 0.004759 |
| noncoding | 29770 | A29770- | A | - | 37 | 37 | AY.29 | 0.000584 |
| noncoding | 29770 | A29770T | A | T | 36 | 36 | AY.43 | 0.000159 |
| noncoding | 29770 | A29770- | A | - | 36 | 36 | B.1.1.351 | 0.100559 |
| noncoding | 29770 | A29770G | A | G | 35 | 35 | AY.20 | 0.00136 |
| noncoding | 29770 | A29770G | A | G | 35 | 35 | B.1.429 | 0.000824 |
| noncoding | 29770 | A29770- | A | - | 33 | 33 | AY.39 | 0.000815 |
| noncoding | 29770 | A29770T | A | T | 32 | 32 | B.1.617.2 | 0.00012 |
| noncoding | 29770 | A29770G | A | G | 29 | 29 | B.1.617.2 | 0.000109 |
| noncoding | 29770 | A29770G | A | G | 28 | 28 | B.1.1.519 | 0.001112 |
| noncoding | 29770 | A29770G | A | G | 25 | 25 | B.1.2 | 0.00022 |
| noncoding | 29770 | A29770- | A | - | 23 | 23 | AY.102 | 0.00061 |
| noncoding | 29770 | A29770- | A | - | 22 | 22 | B.1.1.368 | 0.067901 |
| noncoding | 29770 | A29770- | A | - | 22 | 22 | B.1.258 | 0.001464 |
| noncoding | 29770 | A29770- | A | - | 21 | 21 | B.1.305 | 0.045161 |
| noncoding | 29770 | A29770- | A | - | 19 | 19 | AY.42 | 0.000764 |
| noncoding | 29770 | A29770- | A | - | 19 | 19 | AY.92 | 0.005458 |
| noncoding | 29770 | A29770- | A | - | 17 | 17 | AY.5.4 | 0.004704 |
| noncoding | 29770 | A29770- | A | - | 17 | 17 | B.1.177.56 | 0.011348 |
| noncoding | 29770 | A29770G | A | G | 17 | 17 | B.1.232 | 0.009135 |
| noncoding | 29770 | A29770- | A | - | 16 | 16 | AY.26 | 0.000453 |
| noncoding | 29770 | A29770- | A | - | 16 | 16 | AY.6 | 0.000658 |
| noncoding | 29770 | A29770- | A | - | 14 | 14 | AY.61 | 0.001467 |
| noncoding | 29770 | A29770- | A | - | 14 | 14 | B.1.404 | 0.018229 |
| noncoding | 29770 | A29770- | A | - | 13 | 13 | AY.119 | 0.000459 |
| noncoding | 29770 | A29770- | A | - | 13 | 13 | AY.75.1 | 0.002344 |
| noncoding | 29770 | A29770- | A | - | 13 | 13 | B.1.1.222 | 0.002652 |
| noncoding | 29770 | A29770- | A | - | 13 | 13 | B.1.1.420 | 0.013078 |
| noncoding | 29770 | A29770- | A | - | 13 | 13 | B.1.526 | 0.000306 |
| noncoding | 29770 | A29770T | A | T | 13 | 13 | P.1 | 0.000205 |
| noncoding | 29770 | A29770- | A | - | 13 | 13 | P.1.16 | 0.004863 |
| noncoding | 29770 | A29770T | A | T | 12 | 12 | AY.103 | 0.000075 |
| noncoding | 29770 | A29770- | A | - | 12 | 12 | AY.118 | 0.000752 |
| noncoding | 29770 | A29770- | A | - | 12 | 12 | AY.98.1 | 0.000581 |
| noncoding | 29770 | A29770T | A | T | 12 | 12 | B.1 | 0.00011 |
| noncoding | 29770 | A29770- | A | - | 12 | 12 | B.1.1.28 | 0.003735 |
| noncoding | 29770 | A29770- | A | - | 12 | 12 | B.1.429 | 0.000282 |
| noncoding | 29770 | A29770- | A | - | 11 | 11 | AY.100 | 0.000506 |
| noncoding | 29770 | A29770- | A | - | 11 | 11 | AY.4.2 | 0.000239 |
| noncoding | 29770 | A29770- | A | - | 11 | 11 | AY.75 | 0.000616 |
| noncoding | 29770 | A29770- | A | - | 11 | 11 | B.1.177.86 | 0.002018 |
| noncoding | 29770 | A29770T | A | T | 11 | 11 | B.1.351 | 0.000327 |
| noncoding | 29770 | A29770- | A | - | 11 | 11 | B.1.36 | 0.001605 |
| noncoding | 29770 | A29770- | A | - | 10 | 10 | AY.74 | 0.001156 |
| noncoding | 29770 | A29770- | A | - | 10 | 10 | AY.9 | 0.000676 |
| noncoding | 29770 | A29770- | A | - | 10 | 10 | B.1.596 | 0.000871 |
| noncoding | 29770 | A29770T | A | T | 9 | 9 | AY.44 | 0.000055 |
| noncoding | 29770 | A29770- | A | - | 9 | 9 | B.1.160.14 | 0.019068 |
| noncoding | 29770 | A29770- | A | - | 9 | 9 | C.35 | 0.006966 |
| noncoding | 29770 | A29770G | A | G | 9 | 9 | P.1 | 0.000142 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | AY.117 | 0.000676 |
| noncoding | 29770 | A29770T | A | T | 8 | 8 | AY.25 | 0.000048 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | AY.45 | 0.000973 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | AY.67 | 0.003714 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | AY.85 | 0.003417 |
| noncoding | 29770 | A29770T | A | T | 8 | 8 | B.1.1 | 0.000145 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | B.1.1.303 | 0.022099 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | B.1.1.317 | 0.003294 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | B.1.258.20 | 0.126984 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | B.1.36.29 | 0.004139 |
| noncoding | 29770 | A29770- | A | - | 8 | 8 | P.1.17 | 0.001294 |
| noncoding | 29770 | A29770- | A | - | 7 | 7 | AY.34 | 0.000679 |
| noncoding | 29770 | A29770T | A | T | 7 | 7 | AY.4 | 0.000011 |
| noncoding | 29770 | A29770- | A | - | 7 | 7 | AY.46.4 | 0.001152 |
| noncoding | 29770 | A29770- | A | - | 7 | 7 | B.1.1.519 | 0.000278 |
| noncoding | 29770 | A29770- | A | - | 7 | 7 | B.1.234 | 0.000924 |
| noncoding | 29770 | A29770- | A | - | 7 | 7 | B.1.240 | 0.001509 |
| noncoding | 29770 | A29770- | A | - | 7 | 7 | B.1.36.22 | 0.008454 |
| noncoding | 29770 | A29770- | A | - | 7 | 7 | B.1.621 | 0.00062 |
| noncoding | 29770 | A29770- | A | - | 6 | 6 | AY.23 | 0.000418 |
| noncoding | 29770 | A29770T | A | T | 6 | 6 | AY.26 | 0.00017 |
| noncoding | 29770 | A29770- | A | - | 6 | 6 | AY.46 | 0.000624 |
| noncoding | 29770 | A29770- | A | - | 6 | 6 | AY.98 | 0.000474 |
| noncoding | 29770 | A29770- | A | - | 6 | 6 | B.1.1.214 | 0.000333 |
| noncoding | 29770 | A29770- | A | - | 6 | 6 | B.1.1.318 | 0.001811 |
| noncoding | 29770 | A29770- | A | - | 6 | 6 | B.1.36.31 | 0.010508 |
| noncoding | 29770 | A29770G | A | G | 6 | 6 | B.1.526 | 0.000141 |
| noncoding | 29770 | A29770C | A | C | 6 | 6 | B.1.617.2 | 0.000023 |
| noncoding | 29770 | A29770- | A | - | 6 | 6 | Q.1 | 0.000758 |
| noncoding | 29770 | A29770C | A | C | 5 | 5 | AY.102 | 0.000133 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | AY.114 | 0.001156 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | AY.120 | 0.000186 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | AY.14 | 0.00044 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | AY.20 | 0.000194 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | AY.54 | 0.000477 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | AY.9.2 | 0.000184 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | B | 0.000639 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | B.1.1.284 | 0.000537 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | B.1.258.17 | 0.00052 |
| noncoding | 29770 | A29770T | A | T | 5 | 5 | B.1.429 | 0.000118 |
| noncoding | 29770 | A29770T | A | T | 5 | 5 | B.1.526 | 0.000118 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | B.1.575 | 0.001517 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | B.1.619 | 0.004355 |
| noncoding | 29770 | A29770- | A | - | 5 | 5 | P.1.12 | 0.00242 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | AY.12 | 0.001264 |
| noncoding | 29770 | A29770T | A | T | 4 | 4 | AY.20 | 0.000155 |
| noncoding | 29770 | A29770G | A | G | 4 | 4 | AY.4 | 0.000006 |
| noncoding | 29770 | A29770G | A | G | 4 | 4 | AY.43 | 0.000018 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | AY.69 | 0.000747 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | AY.95 | 0.003044 |
| noncoding | 29770 | A29770G | A | G | 4 | 4 | B.1 | 0.000037 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.1.1 | 0.001307 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.1.170 | 0.004988 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.1.288 | 0.007663 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.1.33 | 0.001684 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.1.464 | 0.005891 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.1.528 | 0.019231 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.104 | 0.01476 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.108 | 0.023256 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.160.33 | 0.017699 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.427 | 0.000202 |
| noncoding | 29770 | A29770C | A | C | 4 | 4 | B.1.525 | 0.000453 |
| noncoding | 29770 | A29770G | A | G | 4 | 4 | B.1.575 | 0.001214 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | B.1.609 | 0.001918 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | C.1 | 0.009569 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | C.37.1 | 0.010471 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | D.2 | 0.0003 |
| noncoding | 29770 | A29770- | A | - | 4 | 4 | P.1.14 | 0.000191 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.109 | 0.002219 |
| noncoding | 29770 | A29770T | A | T | 3 | 3 | AY.12 | 0.000948 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.3.1 | 0.000256 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.30 | 0.001187 |
| noncoding | 29770 | A29770C | A | C | 3 | 3 | AY.44 | 0.000018 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.59 | 0.001589 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.65 | 0.001599 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.70 | 0.000626 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.84 | 0.001312 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | AY.99.2 | 0.000276 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.1.236 | 0.02069 |
| noncoding | 29770 | A29770G | A | G | 3 | 3 | B.1.1.411 | 0.044118 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.1.428 | 0.028302 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.1.432 | 0.003797 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.1.46 | 0.0131 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.177.72 | 0.010169 |
| noncoding | 29770 | A29770T | A | T | 3 | 3 | B.1.177.86 | 0.00055 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.210 | 0.006397 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.214.2 | 0.001799 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.298 | 0.006342 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.36.16 | 0.004274 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.416.1 | 0.004687 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.582 | 0.001472 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.595 | 0.000783 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.637 | 0.000219 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | B.1.9.4 | 0.018405 |
| noncoding | 29770 | A29770G | A | G | 3 | 3 | C.35 | 0.002322 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | C.36 | 0.002732 |
| noncoding | 29770 | A29770- | A | - | 3 | 3 | P.1.15 | 0.000697 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | A | 0.000774 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | A.2.5 | 0.000998 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.110 | 0.000225 |
| noncoding | 29770 | A29770T | A | T | 2 | 2 | AY.29 | 0.000032 |
| noncoding | 29770 | A29770T | A | T | 2 | 2 | AY.3.1 | 0.000171 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.33 | 0.000134 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.35 | 0.000466 |
| noncoding | 29770 | A29770G | A | G | 2 | 2 | AY.39 | 0.000049 |
| noncoding | 29770 | A29770T | A | T | 2 | 2 | AY.4.2 | 0.000043 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.40 | 0.001929 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.46.3 | 0.001867 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.46.6 | 0.000144 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.5.3 | 0.000675 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.56 | 0.00321 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AY.62 | 0.000871 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | AZ.2 | 0.001642 |
| noncoding | 29770 | A29770C | A | C | 2 | 2 | B.1.1.1 | 0.000653 |
| noncoding | 29770 | A29770G | A | G | 2 | 2 | B.1.1.214 | 0.000111 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.25 | 0.001137 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.279 | 0.002242 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.294 | 0.002532 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.298 | 0.001724 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.306 | 0.000877 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.348 | 0.001592 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.354 | 0.008772 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.37 | 0.000386 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.39 | 0.001019 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.1.50 | 0.001358 |
| noncoding | 29770 | A29770T | A | T | 2 | 2 | B.1.1.521 | 0.010695 |
| noncoding | 29770 | A29770G | A | G | 2 | 2 | B.1.126 | 0.002551 |
| noncoding | 29770 | A29770G | A | G | 2 | 2 | B.1.177 | 0.000026 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.177.12 | 0.000303 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.177.44 | 0.001038 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.177.75 | 0.002081 |
| noncoding | 29770 | A29770C | A | C | 2 | 2 | B.1.177.86 | 0.000367 |
| noncoding | 29770 | A29770T | A | T | 2 | 2 | B.1.2 | 0.000018 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.206 | 0.001631 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.241 | 0.001623 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.258.3 | 0.00335 |
| noncoding | 29770 | A29770T | A | T | 2 | 2 | B.1.305 | 0.004301 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.36.8 | 0.002 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.400 | 0.000858 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.428 | 0.002041 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.441 | 0.019231 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.460 | 0.035714 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.564.1 | 0.003155 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.565 | 0.001621 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.1.576 | 0.001813 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.31 | 0.007463 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.39 | 0.004662 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.40 | 0.000729 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | B.6 | 0.00182 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | C.3 | 0.015267 |
| noncoding | 29770 | A29770T | A | T | 2 | 2 | C.37 | 0.000232 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | C.38 | 0.016129 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | N.5 | 0.003534 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | P.1.7 | 0.000639 |
| noncoding | 29770 | A29770- | A | - | 2 | 2 | R.1 | 0.00018 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | A.1 | 0.000282 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | A.21 | 0.00277 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AD.2 | 0.000219 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AK.2 | 0.045455 |
| noncoding | 29770 | A29770V | A | V | 1 | 1 | All | 0 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.10 | 0.00053 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.100 | 0.000046 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | AY.102 | 0.000027 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.103 | 0.000006 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.106 | 0.000335 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | AY.110 | 0.000113 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.117 | 0.000085 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.120.1 | 0.000321 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.120.1 | 0.000321 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.13 | 0.000161 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.16 | 0.00038 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | AY.20 | 0.000039 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.23 | 0.00007 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.24 | 0.000431 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.25 | 0.000006 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.27 | 0.000065 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.29.1 | 0.000221 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | AY.3 | 0.00001 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.3 | 0.00001 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | AY.33 | 0.000067 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.36 | 0.000148 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.39.1 | 0.00004 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.4.2.1 | 0.000149 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.4.5 | 0.000107 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.4.5 | 0.000107 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.44 | 0.000006 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | AY.45 | 0.000122 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.46 | 0.000104 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | AY.46.6 | 0.000072 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.48 | 0.000465 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.51 | 0.000909 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.52 | 0.000814 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | AY.53 | 0.000288 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | AY.54 | 0.000095 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.55 | 0.000917 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | AY.62 | 0.000436 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.7 | 0.000196 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.7 | 0.000196 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.7.1 | 0.000113 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.73 | 0.000665 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.75.1 | 0.00018 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | AY.77 | 0.001127 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.80 | 0.001129 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.81 | 0.001992 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.87 | 0.000833 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | AY.9.1 | 0.000084 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | B.1 | 0.000009 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.1 | 0.000018 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.10 | 0.001115 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.161 | 0.003534 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.166 | 0.033333 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.174 | 0.003378 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.197 | 0.037037 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.216 | 0.00089 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.218 | 0.007692 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.221 | 0.010101 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.1.222 | 0.000204 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.1.222 | 0.000204 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.229 | 0.005747 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.274 | 0.005051 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.277 | 0.000759 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.1.284 | 0.000107 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.286 | 0.002899 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.1.317 | 0.000412 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.337 | 0.003597 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.1.354 | 0.004386 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.1.363 | 0.005988 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.409 | 0.002833 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.413 | 0.006897 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.1.434 | 0.000349 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | B.1.1.48 | 0.002874 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.523 | 0.001563 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.526 | 0.003546 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.54 | 0.003021 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.63 | 0.000386 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.1.63 | 0.000386 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.70 | 0.000341 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.1.74 | 0.00431 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.75 | 0.010638 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.1.99 | 0.02381 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.110 | 0.004525 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.111 | 0.001175 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.131 | 0.008772 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.160.32 | 0.004292 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.177 | 0.000013 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.11 | 0.001698 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.177.28 | 0.007407 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.32 | 0.00135 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.177.33 | 0.001645 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.177.33 | 0.001645 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.4 | 0.000211 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.42 | 0.000894 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.177.54 | 0.000606 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.54 | 0.000606 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.57 | 0.000281 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.6 | 0.000977 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.177.65 | 0.000665 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.65 | 0.000665 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.177.77 | 0.000726 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.177.81 | 0.000189 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.177.81 | 0.000189 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.192 | 0.009259 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | B.1.221 | 0.000071 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.221 | 0.000071 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.222 | 0.001692 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.243 | 0.00007 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | B.1.258 | 0.000067 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.258 | 0.000067 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.258.24 | 0.010753 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.260 | 0.003344 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.281 | 0.021739 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.329 | 0.000608 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.349 | 0.000715 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.351 | 0.00003 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.351.2 | 0.000303 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.351.3 | 0.000876 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.351.5 | 0.0006 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.36 | 0.000146 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.36.16 | 0.001425 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.36.19 | 0.009259 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.36.19 | 0.009259 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.36.8 | 0.001 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.362 | 0.001541 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.367 | 0.000792 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.399 | 0.001934 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.409 | 0.000781 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.416 | 0.001269 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.416 | 0.001269 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.420 | 0.010417 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.427 | 0.00005 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.462 | 0.007246 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.470 | 0.001404 |
| noncoding | 29770 | A29770C | A | C | 1 | 1 | B.1.497 | 0.000315 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.506 | 0.02381 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.509 | 0.000866 |
| noncoding | 29770 | A29770V | A | V | 1 | 1 | B.1.525 | 0.000113 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | B.1.525 | 0.000113 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.595.1 | 0.005848 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.617.1 | 0.000129 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.617.3 | 0.002985 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | B.1.619 | 0.000871 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.619.1 | 0.000641 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.630 | 0.005236 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.1.9.5 | 0.005682 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.3.1 | 0.001658 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | B.55 | 0.00295 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | C.30 | 0.001727 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | C.36.3 | 0.000567 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | C.37 | 0.000116 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | D.2 | 0.000075 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | K.3 | 0.006173 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | L.3 | 0.003546 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | N.4 | 0.004255 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | P.1.1 | 0.000318 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | P.1.10 | 0.000269 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | P.1.14 | 0.000048 |
| noncoding | 29770 | A29770G | A | G | 1 | 1 | P.1.17 | 0.000162 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | P.1.17 | 0.000162 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | P.2 | 0.000187 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | P.6 | 0.003145 |
| noncoding | 29770 | A29770T | A | T | 1 | 1 | Q.1 | 0.000126 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | Q.2 | 0.000613 |
| noncoding | 29770 | A29770- | A | - | 1 | 1 | W.4 | 0.001351 |
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 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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