CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29769 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29769C29769TnoncodingCT1574715747129769-29769

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29769C29769TCT1574715747All0.003012
noncoding29769C29769TCT26702670B.1.1.3180.805673
noncoding29769C29769TCT18641864B.1.1.70.001669
noncoding29769C29769TCT11831183AZ.20.971264
noncoding29769C29769TCT11331133AZ.10.982654
noncoding29769C29769TCT659659AY.1030.004092
noncoding29769C29769TCT589589AY.40.000917
noncoding29769C29769TCT583583AZ.30.886018
noncoding29769C29769TCT470470B.1.1.4640.692194
noncoding29769C29769TCT455455B.1.617.20.001713
noncoding29769C29769TCT381381AY.250.002292
noncoding29769C29769TCT298298B.10.00273
noncoding29769C29769TCT263263AZ.50.922807
noncoding29769C29769TCT261261B.1.1770.003437
noncoding29769C29769TCT250250AZ.40.838926
noncoding29769C29769TCT225225AY.430.000997
noncoding29769C29769TCT210210B.1.1.390.107034
noncoding29769C29769TCT195195B.1.1600.006082
noncoding29769C29769TCT194194B.1.20.001708
noncoding29769C29769TCT176176AY.1020.004666
noncoding29769C29769TCT171171B.1.10.003102
noncoding29769C29769TCT159159AY.440.000968
noncoding29769C29769TCT157157AY.500.1255
noncoding29769C29769TCT138138P.10.002174
noncoding29769C29769TCT118118AZ.2.10.95935
noncoding29769C29769TCT111111AY.420.004466
noncoding29769C29769TCT103103AY.260.002916
noncoding29769C29769TCT102102AY.390.002521
noncoding29769C29769TCT9797B.1.1.2070.114657
noncoding29769C29769TCT9292B.1.177.810.017418
noncoding29769C29769TCT8080B.1.5820.039254
noncoding29769C29769TCT7676B.1.1.4200.076459
noncoding29769C29769TCT6868AY.470.002115
noncoding29769C29769TCT6363AY.290.000994
noncoding29769C29769TCT5858AY.50.001198
noncoding29769C29769TCT5555B.1.5960.004793
noncoding29769C29769TCT5252AY.30.000517
noncoding29769C29769TCT4949AY.4.20.001063
noncoding29769C29769TCT4545AY.1000.00207
noncoding29769C29769TCT4545B.1.2580.002995
noncoding29769C29769TCT4040AY.200.001555
noncoding29769C29769TCT4040B.1.258.170.004159
noncoding29769C29769TCT3737AY.1210.005007
noncoding29769C29769TCT3737AZ.60.310924
noncoding29769C29769TCT3636B.1.2430.002505
noncoding29769C29769TCT3636N.10.610169
noncoding29769C29769TCT3535B.1.4270.001767
noncoding29769C29769TCT3333B.1.466.20.012911
noncoding29769C29769TCT3232B.1.5260.000752
noncoding29769C29769TCT3131AY.4.50.003332
noncoding29769C29769TCT3131B.1.3510.000922
noncoding29769C29769TCT3030B.1.4290.000706
noncoding29769C29769TCT2929B.1.1.5190.001152
noncoding29769C29769TCT2828B.1.1.3170.011527
noncoding29769C29769TCT2626AY.540.002479
noncoding29769C29769TCT2424B.1.1.330.010101
noncoding29769C29769TCT2323AY.39.10.000911
noncoding29769C29769TCT2323B.1.3200.028643
noncoding29769C29769TCT2222AY.330.001469
noncoding29769C29769TCT2121AY.230.001465
noncoding29769C29769TCT2020AY.1200.000744
noncoding29769C29769TCT2020AY.610.002096
noncoding29769C29769TCT2020AY.7.10.002254
noncoding29769C29769TCT2020AY.750.00112
noncoding29769C29769TCT2020B.1.160.290.084388
noncoding29769C29769TCT1919AY.90.001284
noncoding29769C29769TCT1818AY.1050.011576
noncoding29769C29769TCT1717AY.1110.003114
noncoding29769C29769TCT1717AY.60.000699
noncoding29769C29769TCT1717AY.980.001343
noncoding29769C29769TCT1616B.1.1.1010.16
noncoding29769C29769TCT1616B.1.1.5170.108844
noncoding29769C29769TCT1616B.1.177.440.008303
noncoding29769C29769TCT1515AY.75.10.002705
noncoding29769C29769TCT1515B.1.1.3480.011943
noncoding29769C29769TCT1515B.1.2210.001065
noncoding29769C29769TCT1414AY.34.10.007139
noncoding29769C29769TCT1414AY.450.001704
noncoding29769C29769TCT1313B.1.258.140.012745
noncoding29769C29769TCT1313B.1.36.170.006423
noncoding29769C29769TCT1313B.1.5250.001471
noncoding29769C29769TCT1212B.1.1.2940.01519
noncoding29769C29769TCT1212B.1.6190.010453
noncoding29769C29769TCT1212P.20.00224
noncoding29769C29769TCT1111AY.1170.00093
noncoding29769C29769TCT1111AY.1190.000388
noncoding29769C29769TCT1111B.1.1.3980.035484
noncoding29769C29769TCT1111B.1.1.700.003752
noncoding29769C29769TCT1111B.1.3490.007863
noncoding29769C29769TCT1111C.370.001277
noncoding29769C29769TCT1010AY.1180.000626
noncoding29769C29769TCT1010AY.460.001041
noncoding29769C29769TCT1010B.1.177.790.023419
noncoding29769C29769TCT1010B.1.360.001459
noncoding29769C29769TCT1010B.1.617.10.00129
noncoding29769C29769TCT1010B.1.6210.000885
noncoding29769C29769TCT1010P.1.170.001618
noncoding29769C29769TCT99AY.140.000792
noncoding29769C29769TCT99AY.46.40.001481
noncoding29769C29769TCT99AY.490.028754
noncoding29769C29769TCT99B.1.1.2160.008014
noncoding29769C29769TCT99B.1.3110.002471
noncoding29769C29769TCT99Q.10.001137
noncoding29769C29769TCT88AY.10.003166
noncoding29769C29769TCT88AY.116.10.002491
noncoding29769C29769TCT88AY.3.10.000682
noncoding29769C29769TCT88AY.360.001186
noncoding29769C29769TCT88AY.46.60.000578
noncoding29769C29769TCT88AY.480.003721
noncoding29769C29769TCT88AY.740.000925
noncoding29769C29769TCT88AY.9.10.00067
noncoding29769C29769TCT88B.1.177.600.001747
noncoding29769C29769TCT88B.1.2340.001056
noncoding29769C29769TCT88B.1.621.10.004047
noncoding29769C29769TCT88D.20.0006
noncoding29769C29769TCT77AY.340.000679
noncoding29769C29769TCT77AY.550.006422
noncoding29769C29769TCT77B.1.1.280.002179
noncoding29769C29769TCT77B.1.177.70.001154
noncoding29769C29769TCT77B.1.2400.001509
noncoding29769C29769TCT77B.1.4700.009831
noncoding29769C29769TCT77C.360.006375
noncoding29769C29769TCT77R.10.00063
noncoding29769C29769TCT66AY.710.00285
noncoding29769C29769TCT66AY.9.20.00022
noncoding29769C29769TCT66AY.99.20.000553
noncoding29769C29769TCT66B.1.1.2220.001224
noncoding29769C29769TCT66B.1.1.2510.047619
noncoding29769C29769TCT66B.1.177.320.008097
noncoding29769C29769TCT66B.1.5950.001566
noncoding29769C29769TCT66B.1.6090.002876
noncoding29769C29769TCT55AT.10.025641
noncoding29769C29769TCT55AY.100.00265
noncoding29769C29769TCT55AY.280.009452
noncoding29769C29769TCT55AY.46.50.000992
noncoding29769C29769TCT55AY.98.10.000242
noncoding29769C29769TCT55B.1.1.250.002843
noncoding29769C29769TCT55B.1.1.3060.002192
noncoding29769C29769TCT55B.1.1110.005875
noncoding29769C29769TCT55B.1.177.770.003631
noncoding29769C29769TCT55B.1.36.80.005
noncoding29769C29769TCT55B.1.3960.003529
noncoding29769C29769TCT55B.400.001821
noncoding29769C29769TCT55P.1.140.000239
noncoding29769C29769TCT44A0.001548
noncoding29769C29769TCT44AM.30.133333
noncoding29769C29769TCT44AY.23.10.001669
noncoding29769C29769TCT44AY.370.001264
noncoding29769C29769TCT44AY.4.2.10.000596
noncoding29769C29769TCT44AY.530.00115
noncoding29769C29769TCT44AY.690.000747
noncoding29769C29769TCT44B.1.1.2140.000222
noncoding29769C29769TCT44B.1.1.3370.014388
noncoding29769C29769TCT44B.1.1.4340.001394
noncoding29769C29769TCT44B.1.1.500.002716
noncoding29769C29769TCT44B.1.177.120.000607
noncoding29769C29769TCT44B.1.2350.010076
noncoding29769C29769TCT44B.1.36.290.002069
noncoding29769C29769TCT44B.1.5410.017699
noncoding29769C29769TCT44B.1.6280.001409
noncoding29769C29769TCT44C.180.010363
noncoding29769C29769TCT44C.36.30.002269
noncoding29769C29769TCT44P.1.70.001277
noncoding29769C29769TCT44P.30.00638
noncoding29769C29769TCT33A.270.004967
noncoding29769C29769TCT33AY.1080.003308
noncoding29769C29769TCT33AY.1100.000338
noncoding29769C29769TCT33AY.130.000483
noncoding29769C29769TCT33AY.240.001293
noncoding29769C29769TCT33AY.4.30.002525
noncoding29769C29769TCT33AY.5.30.001012
noncoding29769C29769TCT33AY.5.40.00083
noncoding29769C29769TCT33AY.590.001589
noncoding29769C29769TCT33AY.730.001996
noncoding29769C29769TCT33AY.920.000862
noncoding29769C29769TCT33B0.000383
noncoding29769C29769TCT33B.1.1.1410.006036
noncoding29769C29769TCT33B.1.1.1710.011029
noncoding29769C29769TCT33B.1.1.2840.000322
noncoding29769C29769TCT33B.1.1.2910.002227
noncoding29769C29769TCT33B.1.1.2970.006711
noncoding29769C29769TCT33B.1.1.3260.005282
noncoding29769C29769TCT33B.1.1.3970.006757
noncoding29769C29769TCT33B.1.1.4480.006098
noncoding29769C29769TCT33B.1.1.4610.036145
noncoding29769C29769TCT33B.1.1470.002268
noncoding29769C29769TCT33B.1.177.40.000633
noncoding29769C29769TCT33B.1.177.50.003727
noncoding29769C29769TCT33B.1.177.540.001819
noncoding29769C29769TCT33B.1.2320.001612
noncoding29769C29769TCT33B.1.351.20.000908
noncoding29769C29769TCT33B.1.4620.021739
noncoding29769C29769TCT33B.1.4740.005703
noncoding29769C29769TCT33B.1.5760.00272
noncoding29769C29769TCT33B.1.6370.000219
noncoding29769C29769TCT33P.1.120.001452
noncoding29769C29769TCT33P.1.150.000697
noncoding29769C29769TCT22A.10.000564
noncoding29769C29769TCT22A.20.001324
noncoding29769C29769TCT22A.2.50.000998
noncoding29769C29769TCT22AD.20.000438
noncoding29769C29769TCT22AY.1010.000981
noncoding29769C29769TCT22AY.1060.00067
noncoding29769C29769TCT22AY.1160.000574
noncoding29769C29769TCT22AY.320.001065
noncoding29769C29769TCT22AY.46.30.001867
noncoding29769C29769TCT22AY.580.001815
noncoding29769C29769TCT22AY.70.000392
noncoding29769C29769TCT22AY.820.002714
noncoding29769C29769TCT22AY.850.000854
noncoding29769C29769TCT22AY.890.009804
noncoding29769C29769TCT22AY.950.001522
noncoding29769C29769TCT22B.1.1.10.000653
noncoding29769C29769TCT22B.1.1.1170.019417
noncoding29769C29769TCT22B.1.1.1760.000879
noncoding29769C29769TCT22B.1.1.3440.021505
noncoding29769C29769TCT22B.1.1.370.000386
noncoding29769C29769TCT22B.1.1.3720.001377
noncoding29769C29769TCT22B.1.1.4300.083333
noncoding29769C29769TCT22B.1.177.160.001329
noncoding29769C29769TCT22B.1.258.160.003273
noncoding29769C29769TCT22B.1.3360.004878
noncoding29769C29769TCT22B.1.36.10.002281
noncoding29769C29769TCT22B.1.36.180.00084
noncoding29769C29769TCT22B.1.3670.001585
noncoding29769C29769TCT22B.1.3690.00057
noncoding29769C29769TCT22B.1.3910.002255
noncoding29769C29769TCT22B.1.4000.000858
noncoding29769C29769TCT22B.1.4040.002604
noncoding29769C29769TCT22B.1.4090.001563
noncoding29769C29769TCT22B.1.4220.001625
noncoding29769C29769TCT22B.1.4260.002018
noncoding29769C29769TCT22B.1.4360.002058
noncoding29769C29769TCT22B.1.4530.006472
noncoding29769C29769TCT22B.1.4590.008163
noncoding29769C29769TCT22B.1.4830.222222
noncoding29769C29769TCT22B.1.5170.000854
noncoding29769C29769TCT22B.1.5270.007407
noncoding29769C29769TCT22B.1.5770.001375
noncoding29769C29769TCT22N.50.003534
noncoding29769C29769TCT22P.1.100.000539
noncoding29769C29769TCT22P.1.10.10.01626
noncoding29769C29769TCT22Q.30.00029
noncoding29769C29769TCT22Q.40.00091
noncoding29769C29769TCT22Q.80.00033
noncoding29769C29769TCT11A.210.00277
noncoding29769C29769TCT11A.23.10.000704
noncoding29769C29769TCT11A.50.001923
noncoding29769C29769TCT11AH.30.003802
noncoding29769C29769TCT11AM.40.003571
noncoding29769C29769TCT11AY.1090.00074
noncoding29769C29769TCT11AY.110.001339
noncoding29769C29769TCT11AY.1130.000142
noncoding29769C29769TCT11AY.16.10.00047
noncoding29769C29769TCT11AY.190.00114
noncoding29769C29769TCT11AY.210.001898
noncoding29769C29769TCT11AY.29.10.000221
noncoding29769C29769TCT11AY.4.10.000737
noncoding29769C29769TCT11AY.4.40.000409
noncoding29769C29769TCT11AY.400.000964
noncoding29769C29769TCT11AY.46.10.001027
noncoding29769C29769TCT11AY.510.000909
noncoding29769C29769TCT11AY.680.000274
noncoding29769C29769TCT11AY.7.20.000559
noncoding29769C29769TCT11AY.700.000209
noncoding29769C29769TCT11AY.720.001361
noncoding29769C29769TCT11AY.770.001127
noncoding29769C29769TCT11AY.9.2.10.001976
noncoding29769C29769TCT11AY.990.001049
noncoding29769C29769TCT11B.1.1.1420.017544
noncoding29769C29769TCT11B.1.1.1630.007634
noncoding29769C29769TCT11B.1.1.1700.001247
noncoding29769C29769TCT11B.1.1.1890.001513
noncoding29769C29769TCT11B.1.1.1940.00495
noncoding29769C29769TCT11B.1.1.2180.007692
noncoding29769C29769TCT11B.1.1.2200.001859
noncoding29769C29769TCT11B.1.1.2360.006897
noncoding29769C29769TCT11B.1.1.2370.005405
noncoding29769C29769TCT11B.1.1.2770.000759
noncoding29769C29769TCT11B.1.1.2880.001916
noncoding29769C29769TCT11B.1.1.2980.000862
noncoding29769C29769TCT11B.1.1.3050.003861
noncoding29769C29769TCT11B.1.1.310.066667
noncoding29769C29769TCT11B.1.1.3120.001912
noncoding29769C29769TCT11B.1.1.3280.016949
noncoding29769C29769TCT11B.1.1.3540.004386
noncoding29769C29769TCT11B.1.1.3750.011905
noncoding29769C29769TCT11B.1.1.4090.002833
noncoding29769C29769TCT11B.1.1.430.014925
noncoding29769C29769TCT11B.1.1.4320.001266
noncoding29769C29769TCT11B.1.1.4420.018519
noncoding29769C29769TCT11B.1.1.460.004367
noncoding29769C29769TCT11B.1.1.4620.008621
noncoding29769C29769TCT11B.1.1.4630.0625
noncoding29769C29769TCT11B.1.1.4860.001577
noncoding29769C29769TCT11B.1.1.5210.005348
noncoding29769C29769TCT11B.1.1.5230.001563
noncoding29769C29769TCT11B.1.1.5260.003546
noncoding29769C29769TCT11B.1.1.540.003021
noncoding29769C29769TCT11B.1.1.710.006061
noncoding29769C29769TCT11B.1.1.870.066667
noncoding29769C29769TCT11B.1.1040.00369
noncoding29769C29769TCT11B.1.110.30.000718
noncoding29769C29769TCT11B.1.1190.010526
noncoding29769C29769TCT11B.1.1260.001276
noncoding29769C29769TCT11B.1.1310.008772
noncoding29769C29769TCT11B.1.1450.052632
noncoding29769C29769TCT11B.1.160.280.002924
noncoding29769C29769TCT11B.1.177.100.000878
noncoding29769C29769TCT11B.1.177.210.000076
noncoding29769C29769TCT11B.1.177.280.007407
noncoding29769C29769TCT11B.1.177.310.011494
noncoding29769C29769TCT11B.1.177.330.001645
noncoding29769C29769TCT11B.1.177.350.000691
noncoding29769C29769TCT11B.1.177.570.000281
noncoding29769C29769TCT11B.1.177.730.000566
noncoding29769C29769TCT11B.1.177.870.000728
noncoding29769C29769TCT11B.1.2060.000816
noncoding29769C29769TCT11B.1.2140.003663
noncoding29769C29769TCT11B.1.214.20.0006
noncoding29769C29769TCT11B.1.2370.004975
noncoding29769C29769TCT11B.1.2840.013158
noncoding29769C29769TCT11B.1.3130.006579
noncoding29769C29769TCT11B.1.3240.001605
noncoding29769C29769TCT11B.1.3400.004292
noncoding29769C29769TCT11B.1.3500.002933
noncoding29769C29769TCT11B.1.351.30.000876
noncoding29769C29769TCT11B.1.3550.011111
noncoding29769C29769TCT11B.1.36.160.001425
noncoding29769C29769TCT11B.1.36.270.000763
noncoding29769C29769TCT11B.1.36.350.002604
noncoding29769C29769TCT11B.1.36.380.001642
noncoding29769C29769TCT11B.1.3610.001289
noncoding29769C29769TCT11B.1.3890.001002
noncoding29769C29769TCT11B.1.4060.006061
noncoding29769C29769TCT11B.1.415.10.007576
noncoding29769C29769TCT11B.1.4160.001269
noncoding29769C29769TCT11B.1.4390.005917
noncoding29769C29769TCT11B.1.4560.003268
noncoding29769C29769TCT11B.1.4970.000315
noncoding29769C29769TCT11B.1.4990.00105
noncoding29769C29769TCT11B.1.5110.034483
noncoding29769C29769TCT11B.1.5240.001406
noncoding29769C29769TCT11B.1.5400.009709
noncoding29769C29769TCT11B.1.5600.00463
noncoding29769C29769TCT11B.1.5610.000397
noncoding29769C29769TCT11B.1.5640.000426
noncoding29769C29769TCT11B.1.5650.00081
noncoding29769C29769TCT11B.1.5680.001111
noncoding29769C29769TCT11B.1.5750.000303
noncoding29769C29769TCT11B.1.595.10.005848
noncoding29769C29769TCT11B.1.5990.00365
noncoding29769C29769TCT11B.1.6000.005848
noncoding29769C29769TCT11B.1.617.30.002985
noncoding29769C29769TCT11B.1.6200.000946
noncoding29769C29769TCT11B.30.000831
noncoding29769C29769TCT11B.390.002331
noncoding29769C29769TCT11B.450.003831
noncoding29769C29769TCT11C.1.20.004255
noncoding29769C29769TCT11C.110.010638
noncoding29769C29769TCT11C.36.3.10.002717
noncoding29769C29769TCT11C.37.10.002618
noncoding29769C29769TCT11C.40.01
noncoding29769C29769TCT11P.1.130.000898
noncoding29769C29769TCT11P.1.20.001156
noncoding29769C29769TCT11P.1.40.000977

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.