CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29768

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29768	A29768-		noncoding	A	-	12461	12461	1	29768-29768
noncoding	29768	A29768G		noncoding	A	G	227	227	1	29768-29768
noncoding	29768	A29768C		noncoding	A	C	46	46	1	29768-29768
noncoding	29768	A29768T		noncoding	A	T	36	36	1	29768-29768

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29768	A29768-	A	-	12461	12461	All	0.002383
noncoding	29768	A29768-	A	-	3717	3717	B.1.525	0.420618
noncoding	29768	A29768-	A	-	1762	1762	B.1.1.311	0.631089
noncoding	29768	A29768-	A	-	1374	1374	B.1.1.7	0.00123
noncoding	29768	A29768-	A	-	1331	1331	AY.4	0.002072
noncoding	29768	A29768-	A	-	827	827	AY.38	0.412881
noncoding	29768	A29768-	A	-	268	268	AY.5	0.005534
noncoding	29768	A29768-	A	-	257	257	B.1.2	0.002263
noncoding	29768	A29768G	A	G	227	227	All	0.000043
noncoding	29768	A29768-	A	-	207	207	AY.25	0.001245
noncoding	29768	A29768-	A	-	158	158	B.1.617.2	0.000595
noncoding	29768	A29768-	A	-	147	147	AY.103	0.000913
noncoding	29768	A29768-	A	-	142	142	B.1.177	0.00187
noncoding	29768	A29768-	A	-	137	137	B.1	0.001255
noncoding	29768	A29768-	A	-	125	125	B.1.466.1	0.899281
noncoding	29768	A29768-	A	-	97	97	AY.43	0.00043
noncoding	29768	A29768-	A	-	95	95	B.1.351	0.002824
noncoding	29768	A29768-	A	-	93	93	B.1.221	0.006606
noncoding	29768	A29768-	A	-	90	90	AY.47	0.002799
noncoding	29768	A29768-	A	-	78	78	B.1.160	0.002433
noncoding	29768	A29768-	A	-	65	65	AY.3	0.000647
noncoding	29768	A29768-	A	-	63	63	B.1.1	0.001143
noncoding	29768	A29768-	A	-	59	59	AY.111	0.010806
noncoding	29768	A29768-	A	-	51	51	P.1	0.000803
noncoding	29768	A29768-	A	-	47	47	B.1.243	0.00327
noncoding	29768	A29768C	A	C	46	46	All	0.000009
noncoding	29768	A29768-	A	-	46	46	AY.44	0.00028
noncoding	29768	A29768-	A	-	44	44	B.1.369	0.01255
noncoding	29768	A29768-	A	-	42	42	C.37	0.004875
noncoding	29768	A29768G	A	G	41	41	B.1.1.7	0.000037
noncoding	29768	A29768G	A	G	40	40	AY.44	0.000243
noncoding	29768	A29768T	A	T	36	36	All	0.000007
noncoding	29768	A29768-	A	-	36	36	AY.29	0.000568
noncoding	29768	A29768-	A	-	36	36	B.1.1.351	0.100559
noncoding	29768	A29768-	A	-	34	34	AY.39	0.00084
noncoding	29768	A29768-	A	-	23	23	AY.102	0.00061
noncoding	29768	A29768-	A	-	22	22	B.1.1.368	0.067901
noncoding	29768	A29768-	A	-	22	22	B.1.429	0.000518
noncoding	29768	A29768-	A	-	21	21	B.1.1.222	0.004284
noncoding	29768	A29768G	A	G	21	21	B.1.177.82	0.010024
noncoding	29768	A29768-	A	-	21	21	B.1.305	0.045161
noncoding	29768	A29768G	A	G	20	20	B.1.36.29	0.010347
noncoding	29768	A29768-	A	-	19	19	AY.42	0.000764
noncoding	29768	A29768-	A	-	19	19	AY.92	0.005458
noncoding	29768	A29768-	A	-	19	19	B.1.526	0.000447
noncoding	29768	A29768-	A	-	17	17	AY.5.4	0.004704
noncoding	29768	A29768-	A	-	17	17	B.1.1.28	0.005291
noncoding	29768	A29768-	A	-	17	17	B.1.177.56	0.011348
noncoding	29768	A29768-	A	-	16	16	AY.26	0.000453
noncoding	29768	A29768-	A	-	16	16	AY.6	0.000658
noncoding	29768	A29768G	A	G	15	15	B.1.575	0.004551
noncoding	29768	A29768-	A	-	14	14	AY.61	0.001467
noncoding	29768	A29768-	A	-	14	14	B.1.258	0.000932
noncoding	29768	A29768-	A	-	14	14	B.1.404	0.018229
noncoding	29768	A29768-	A	-	13	13	AY.75.1	0.002344
noncoding	29768	A29768-	A	-	13	13	AY.98.1	0.00063
noncoding	29768	A29768-	A	-	13	13	B.1.1.420	0.013078
noncoding	29768	A29768-	A	-	12	12	AY.118	0.000752
noncoding	29768	A29768-	A	-	12	12	AY.119	0.000424
noncoding	29768	A29768T	A	T	12	12	B.1.1.7	0.000011
noncoding	29768	A29768-	A	-	12	12	B.1.177.75	0.012487
noncoding	29768	A29768-	A	-	11	11	AY.100	0.000506
noncoding	29768	A29768-	A	-	11	11	AY.4.2	0.000239
noncoding	29768	A29768-	A	-	11	11	AY.75	0.000616
noncoding	29768	A29768-	A	-	11	11	AY.9	0.000744
noncoding	29768	A29768-	A	-	11	11	B.1.36	0.001605
noncoding	29768	A29768-	A	-	10	10	AY.74	0.001156
noncoding	29768	A29768-	A	-	10	10	B.1.1.318	0.003018
noncoding	29768	A29768-	A	-	10	10	B.1.36.29	0.005173
noncoding	29768	A29768-	A	-	10	10	B.1.596	0.000871
noncoding	29768	A29768-	A	-	9	9	AY.20	0.00035
noncoding	29768	A29768C	A	C	9	9	AY.46.5	0.001786
noncoding	29768	A29768-	A	-	9	9	B.1.1.519	0.000357
noncoding	29768	A29768-	A	-	9	9	B.1.160.14	0.019068
noncoding	29768	A29768G	A	G	9	9	B.1.177	0.000119
noncoding	29768	A29768C	A	C	9	9	B.1.600	0.052632
noncoding	29768	A29768-	A	-	9	9	B.1.621	0.000797
noncoding	29768	A29768-	A	-	9	9	C.35	0.006966
noncoding	29768	A29768-	A	-	8	8	AY.117	0.000676
noncoding	29768	A29768-	A	-	8	8	AY.45	0.000973
noncoding	29768	A29768-	A	-	8	8	AY.67	0.003714
noncoding	29768	A29768-	A	-	8	8	AY.85	0.003417
noncoding	29768	A29768-	A	-	8	8	B.1.1.214	0.000444
noncoding	29768	A29768-	A	-	8	8	B.1.1.303	0.022099
noncoding	29768	A29768-	A	-	8	8	B.1.240	0.001725
noncoding	29768	A29768-	A	-	8	8	B.1.258.20	0.126984
noncoding	29768	A29768-	A	-	8	8	B.1.599	0.029197
noncoding	29768	A29768T	A	T	8	8	P.1	0.000126
noncoding	29768	A29768-	A	-	7	7	AY.34	0.000679
noncoding	29768	A29768-	A	-	7	7	B.1.234	0.000924
noncoding	29768	A29768-	A	-	7	7	B.1.36.22	0.008454
noncoding	29768	A29768-	A	-	7	7	B.1.427	0.000353
noncoding	29768	A29768G	A	G	7	7	B.1.525	0.000792
noncoding	29768	A29768G	A	G	6	6	AY.4	0.000009
noncoding	29768	A29768-	A	-	6	6	AY.46	0.000624
noncoding	29768	A29768-	A	-	6	6	AY.46.4	0.000987
noncoding	29768	A29768-	A	-	6	6	B.1.241	0.00487
noncoding	29768	A29768-	A	-	6	6	B.1.36.31	0.010508
noncoding	29768	A29768G	A	G	6	6	B.1.617.2	0.000023
noncoding	29768	A29768-	A	-	6	6	P.1.16	0.002245
noncoding	29768	A29768-	A	-	5	5	AY.114	0.001156
noncoding	29768	A29768-	A	-	5	5	AY.14	0.00044
noncoding	29768	A29768-	A	-	5	5	AY.54	0.000477
noncoding	29768	A29768-	A	-	5	5	AY.9.2	0.000184
noncoding	29768	A29768-	A	-	5	5	AY.98	0.000395
noncoding	29768	A29768-	A	-	5	5	B	0.000639
noncoding	29768	A29768G	A	G	5	5	B.1.1	0.000091
noncoding	29768	A29768-	A	-	5	5	B.1.1.284	0.000537
noncoding	29768	A29768C	A	C	5	5	B.1.1.7	0.000004
noncoding	29768	A29768-	A	-	5	5	B.1.575	0.001517
noncoding	29768	A29768-	A	-	5	5	P.1.12	0.00242
noncoding	29768	A29768-	A	-	4	4	AY.12	0.001264
noncoding	29768	A29768-	A	-	4	4	AY.120	0.000149
noncoding	29768	A29768-	A	-	4	4	AY.23	0.000279
noncoding	29768	A29768-	A	-	4	4	AY.69	0.000747
noncoding	29768	A29768G	A	G	4	4	AY.9.1	0.000335
noncoding	29768	A29768-	A	-	4	4	B.1.1.1	0.001307
noncoding	29768	A29768-	A	-	4	4	B.1.1.288	0.007663
noncoding	29768	A29768-	A	-	4	4	B.1.1.33	0.001684
noncoding	29768	A29768-	A	-	4	4	B.1.1.464	0.005891
noncoding	29768	A29768-	A	-	4	4	B.1.104	0.01476
noncoding	29768	A29768-	A	-	4	4	B.1.108	0.023256
noncoding	29768	A29768-	A	-	4	4	B.1.160.33	0.017699
noncoding	29768	A29768-	A	-	4	4	B.1.177.86	0.000734
noncoding	29768	A29768-	A	-	4	4	B.1.258.17	0.000416
noncoding	29768	A29768-	A	-	4	4	B.1.595	0.001044
noncoding	29768	A29768-	A	-	4	4	B.1.609	0.001918
noncoding	29768	A29768-	A	-	4	4	C.1	0.009569
noncoding	29768	A29768-	A	-	4	4	D.2	0.0003
noncoding	29768	A29768-	A	-	4	4	P.1.14	0.000191
noncoding	29768	A29768-	A	-	3	3	A	0.001161
noncoding	29768	A29768-	A	-	3	3	AY.109	0.002219
noncoding	29768	A29768G	A	G	3	3	AY.23.1	0.001252
noncoding	29768	A29768-	A	-	3	3	AY.24	0.001293
noncoding	29768	A29768G	A	G	3	3	AY.25	0.000018
noncoding	29768	A29768-	A	-	3	3	AY.3.1	0.000256
noncoding	29768	A29768-	A	-	3	3	AY.30	0.001187
noncoding	29768	A29768C	A	C	3	3	AY.4	0.000005
noncoding	29768	A29768-	A	-	3	3	AY.59	0.001589
noncoding	29768	A29768-	A	-	3	3	AY.65	0.001599
noncoding	29768	A29768-	A	-	3	3	AY.70	0.000626
noncoding	29768	A29768-	A	-	3	3	AY.84	0.001312
noncoding	29768	A29768G	A	G	3	3	B.1	0.000027
noncoding	29768	A29768-	A	-	3	3	B.1.1.170	0.003741
noncoding	29768	A29768-	A	-	3	3	B.1.1.236	0.02069
noncoding	29768	A29768-	A	-	3	3	B.1.1.428	0.028302
noncoding	29768	A29768-	A	-	3	3	B.1.1.432	0.003797
noncoding	29768	A29768-	A	-	3	3	B.1.1.46	0.0131
noncoding	29768	A29768T	A	T	3	3	B.1.1.50	0.002037
noncoding	29768	A29768-	A	-	3	3	B.1.1.528	0.014423
noncoding	29768	A29768-	A	-	3	3	B.1.177.72	0.010169
noncoding	29768	A29768-	A	-	3	3	B.1.210	0.006397
noncoding	29768	A29768-	A	-	3	3	B.1.214.2	0.001799
noncoding	29768	A29768-	A	-	3	3	B.1.298	0.006342
noncoding	29768	A29768-	A	-	3	3	B.1.36.16	0.004274
noncoding	29768	A29768-	A	-	3	3	B.1.416.1	0.004687
noncoding	29768	A29768-	A	-	3	3	B.1.44	0.025
noncoding	29768	A29768-	A	-	3	3	B.1.576	0.00272
noncoding	29768	A29768-	A	-	3	3	B.1.582	0.001472
noncoding	29768	A29768-	A	-	3	3	B.1.590	0.013636
noncoding	29768	A29768-	A	-	3	3	B.1.637	0.000219
noncoding	29768	A29768-	A	-	3	3	B.1.9.4	0.018405
noncoding	29768	A29768-	A	-	3	3	B.1.91	0.006224
noncoding	29768	A29768-	A	-	3	3	P.1.15	0.000697
noncoding	29768	A29768-	A	-	3	3	P.1.17	0.000485
noncoding	29768	A29768-	A	-	3	3	Q.3	0.000435
noncoding	29768	A29768C	A	C	2	2	A.1	0.000564
noncoding	29768	A29768-	A	-	2	2	A.2.5	0.000998
noncoding	29768	A29768G	A	G	2	2	AY.102	0.000053
noncoding	29768	A29768-	A	-	2	2	AY.110	0.000225
noncoding	29768	A29768C	A	C	2	2	AY.25	0.000012
noncoding	29768	A29768-	A	-	2	2	AY.35	0.000466
noncoding	29768	A29768-	A	-	2	2	AY.40	0.001929
noncoding	29768	A29768G	A	G	2	2	AY.43	0.000009
noncoding	29768	A29768T	A	T	2	2	AY.44	0.000012
noncoding	29768	A29768G	A	G	2	2	AY.46	0.000208
noncoding	29768	A29768-	A	-	2	2	AY.46.3	0.001867
noncoding	29768	A29768-	A	-	2	2	AY.46.6	0.000144
noncoding	29768	A29768-	A	-	2	2	AY.5.3	0.000675
noncoding	29768	A29768-	A	-	2	2	AY.56	0.00321
noncoding	29768	A29768-	A	-	2	2	AY.62	0.000871
noncoding	29768	A29768C	A	C	2	2	AY.87	0.001665
noncoding	29768	A29768-	A	-	2	2	AY.95	0.001522
noncoding	29768	A29768-	A	-	2	2	AY.99.2	0.000184
noncoding	29768	A29768-	A	-	2	2	AZ.2	0.001642
noncoding	29768	A29768-	A	-	2	2	AZ.4	0.006711
noncoding	29768	A29768T	A	T	2	2	B.1	0.000018
noncoding	29768	A29768-	A	-	2	2	B.1.1.174	0.006757
noncoding	29768	A29768-	A	-	2	2	B.1.1.25	0.001137
noncoding	29768	A29768-	A	-	2	2	B.1.1.279	0.002242
noncoding	29768	A29768-	A	-	2	2	B.1.1.294	0.002532
noncoding	29768	A29768-	A	-	2	2	B.1.1.298	0.001724
noncoding	29768	A29768-	A	-	2	2	B.1.1.306	0.000877
noncoding	29768	A29768-	A	-	2	2	B.1.1.317	0.000823
noncoding	29768	A29768-	A	-	2	2	B.1.1.348	0.001592
noncoding	29768	A29768-	A	-	2	2	B.1.1.354	0.008772
noncoding	29768	A29768-	A	-	2	2	B.1.1.37	0.000386
noncoding	29768	A29768-	A	-	2	2	B.1.1.39	0.001019
noncoding	29768	A29768-	A	-	2	2	B.1.1.50	0.001358
noncoding	29768	A29768-	A	-	2	2	B.1.177.12	0.000303
noncoding	29768	A29768-	A	-	2	2	B.1.177.44	0.001038
noncoding	29768	A29768-	A	-	2	2	B.1.206	0.001631
noncoding	29768	A29768-	A	-	2	2	B.1.258.3	0.00335
noncoding	29768	A29768G	A	G	2	2	B.1.351	0.000059
noncoding	29768	A29768G	A	G	2	2	B.1.36.16	0.002849
noncoding	29768	A29768-	A	-	2	2	B.1.36.8	0.002
noncoding	29768	A29768-	A	-	2	2	B.1.400	0.000858
noncoding	29768	A29768-	A	-	2	2	B.1.428	0.002041
noncoding	29768	A29768-	A	-	2	2	B.1.441	0.019231
noncoding	29768	A29768-	A	-	2	2	B.1.460	0.035714
noncoding	29768	A29768G	A	G	2	2	B.1.466.2	0.000782
noncoding	29768	A29768C	A	C	2	2	B.1.525	0.000226
noncoding	29768	A29768-	A	-	2	2	B.1.564.1	0.003155
noncoding	29768	A29768-	A	-	2	2	B.1.565	0.001621
noncoding	29768	A29768G	A	G	2	2	B.1.596	0.000174
noncoding	29768	A29768T	A	T	2	2	B.1.617.2	0.000008
noncoding	29768	A29768C	A	C	2	2	B.1.617.2	0.000008
noncoding	29768	A29768-	A	-	2	2	B.31	0.007463
noncoding	29768	A29768-	A	-	2	2	B.39	0.004662
noncoding	29768	A29768-	A	-	2	2	B.40	0.000729
noncoding	29768	A29768-	A	-	2	2	B.6	0.00182
noncoding	29768	A29768-	A	-	2	2	C.3	0.015267
noncoding	29768	A29768-	A	-	2	2	C.36	0.001821
noncoding	29768	A29768-	A	-	2	2	C.36.3	0.001134
noncoding	29768	A29768-	A	-	2	2	C.38	0.016129
noncoding	29768	A29768-	A	-	2	2	N.5	0.003534
noncoding	29768	A29768-	A	-	2	2	R.1	0.00018
noncoding	29768	A29768T	A	T	1	1	A.9	0.045455
noncoding	29768	A29768-	A	-	1	1	AD.2	0.000219
noncoding	29768	A29768-	A	-	1	1	AK.2	0.045455
noncoding	29768	A29768-	A	-	1	1	AY.10	0.00053
noncoding	29768	A29768G	A	G	1	1	AY.103	0.000006
noncoding	29768	A29768-	A	-	1	1	AY.106	0.000335
noncoding	29768	A29768C	A	C	1	1	AY.119	0.000035
noncoding	29768	A29768-	A	-	1	1	AY.120.1	0.000321
noncoding	29768	A29768G	A	G	1	1	AY.121	0.000135
noncoding	29768	A29768-	A	-	1	1	AY.13	0.000161
noncoding	29768	A29768-	A	-	1	1	AY.16	0.00038
noncoding	29768	A29768C	A	C	1	1	AY.23	0.00007
noncoding	29768	A29768G	A	G	1	1	AY.23	0.00007
noncoding	29768	A29768T	A	T	1	1	AY.23	0.00007
noncoding	29768	A29768T	A	T	1	1	AY.26	0.000028
noncoding	29768	A29768-	A	-	1	1	AY.27	0.000065
noncoding	29768	A29768-	A	-	1	1	AY.29.1	0.000221
noncoding	29768	A29768C	A	C	1	1	AY.3	0.00001
noncoding	29768	A29768-	A	-	1	1	AY.33	0.000067
noncoding	29768	A29768-	A	-	1	1	AY.36	0.000148
noncoding	29768	A29768G	A	G	1	1	AY.39	0.000025
noncoding	29768	A29768-	A	-	1	1	AY.39.1	0.00004
noncoding	29768	A29768-	A	-	1	1	AY.4.2.1	0.000149
noncoding	29768	A29768T	A	T	1	1	AY.43	0.000004
noncoding	29768	A29768C	A	C	1	1	AY.43	0.000004
noncoding	29768	A29768G	A	G	1	1	AY.47	0.000031
noncoding	29768	A29768-	A	-	1	1	AY.48	0.000465
noncoding	29768	A29768T	A	T	1	1	AY.5	0.000021
noncoding	29768	A29768G	A	G	1	1	AY.5.4	0.000277
noncoding	29768	A29768-	A	-	1	1	AY.51	0.000909
noncoding	29768	A29768-	A	-	1	1	AY.52	0.000814
noncoding	29768	A29768C	A	C	1	1	AY.69	0.000187
noncoding	29768	A29768-	A	-	1	1	AY.7	0.000196
noncoding	29768	A29768G	A	G	1	1	AY.7.1	0.000113
noncoding	29768	A29768G	A	G	1	1	AY.74	0.000116
noncoding	29768	A29768G	A	G	1	1	AY.75	0.000056
noncoding	29768	A29768-	A	-	1	1	AY.80	0.001129
noncoding	29768	A29768-	A	-	1	1	AY.81	0.001992
noncoding	29768	A29768-	A	-	1	1	AY.87	0.000833
noncoding	29768	A29768-	A	-	1	1	AY.9.1	0.000084
noncoding	29768	A29768G	A	G	1	1	B	0.000128
noncoding	29768	A29768C	A	C	1	1	B.1	0.000009
noncoding	29768	A29768-	A	-	1	1	B.1.1.10	0.001115
noncoding	29768	A29768-	A	-	1	1	B.1.1.161	0.003534
noncoding	29768	A29768-	A	-	1	1	B.1.1.166	0.033333
noncoding	29768	A29768-	A	-	1	1	B.1.1.196	0.005714
noncoding	29768	A29768-	A	-	1	1	B.1.1.197	0.037037
noncoding	29768	A29768-	A	-	1	1	B.1.1.216	0.00089
noncoding	29768	A29768-	A	-	1	1	B.1.1.218	0.007692
noncoding	29768	A29768-	A	-	1	1	B.1.1.221	0.010101
noncoding	29768	A29768-	A	-	1	1	B.1.1.229	0.005747
noncoding	29768	A29768-	A	-	1	1	B.1.1.274	0.005051
noncoding	29768	A29768-	A	-	1	1	B.1.1.277	0.000759
noncoding	29768	A29768G	A	G	1	1	B.1.1.284	0.000107
noncoding	29768	A29768-	A	-	1	1	B.1.1.286	0.002899
noncoding	29768	A29768C	A	C	1	1	B.1.1.315	0.008475
noncoding	29768	A29768-	A	-	1	1	B.1.1.337	0.003597
noncoding	29768	A29768G	A	G	1	1	B.1.1.37	0.000193
noncoding	29768	A29768G	A	G	1	1	B.1.1.39	0.00051
noncoding	29768	A29768-	A	-	1	1	B.1.1.409	0.002833
noncoding	29768	A29768-	A	-	1	1	B.1.1.413	0.006897
noncoding	29768	A29768G	A	G	1	1	B.1.1.519	0.00004
noncoding	29768	A29768G	A	G	1	1	B.1.1.523	0.001563
noncoding	29768	A29768-	A	-	1	1	B.1.1.526	0.003546
noncoding	29768	A29768-	A	-	1	1	B.1.1.54	0.003021
noncoding	29768	A29768-	A	-	1	1	B.1.1.63	0.000386
noncoding	29768	A29768-	A	-	1	1	B.1.1.75	0.010638
noncoding	29768	A29768-	A	-	1	1	B.1.1.99	0.02381
noncoding	29768	A29768-	A	-	1	1	B.1.110	0.004525
noncoding	29768	A29768-	A	-	1	1	B.1.111	0.001175
noncoding	29768	A29768G	A	G	1	1	B.1.157	0.002985
noncoding	29768	A29768G	A	G	1	1	B.1.160	0.000031
noncoding	29768	A29768-	A	-	1	1	B.1.160.32	0.004292
noncoding	29768	A29768-	A	-	1	1	B.1.177.11	0.001698
noncoding	29768	A29768-	A	-	1	1	B.1.177.32	0.00135
noncoding	29768	A29768-	A	-	1	1	B.1.177.4	0.000211
noncoding	29768	A29768-	A	-	1	1	B.1.177.42	0.000894
noncoding	29768	A29768-	A	-	1	1	B.1.177.54	0.000606
noncoding	29768	A29768-	A	-	1	1	B.1.177.57	0.000281
noncoding	29768	A29768-	A	-	1	1	B.1.177.6	0.000977
noncoding	29768	A29768G	A	G	1	1	B.1.177.63	0.002703
noncoding	29768	A29768-	A	-	1	1	B.1.177.65	0.000665
noncoding	29768	A29768-	A	-	1	1	B.1.177.77	0.000726
noncoding	29768	A29768-	A	-	1	1	B.1.177.81	0.000189
noncoding	29768	A29768-	A	-	1	1	B.1.178	0.02381
noncoding	29768	A29768-	A	-	1	1	B.1.192	0.009259
noncoding	29768	A29768C	A	C	1	1	B.1.2	0.000009
noncoding	29768	A29768G	A	G	1	1	B.1.2	0.000009
noncoding	29768	A29768-	A	-	1	1	B.1.222	0.001692
noncoding	29768	A29768-	A	-	1	1	B.1.258.24	0.010753
noncoding	29768	A29768-	A	-	1	1	B.1.260	0.003344
noncoding	29768	A29768-	A	-	1	1	B.1.329	0.000608
noncoding	29768	A29768-	A	-	1	1	B.1.349	0.000715
noncoding	29768	A29768-	A	-	1	1	B.1.351.2	0.000303
noncoding	29768	A29768G	A	G	1	1	B.1.351.3	0.000876
noncoding	29768	A29768-	A	-	1	1	B.1.351.3	0.000876
noncoding	29768	A29768G	A	G	1	1	B.1.36	0.000146
noncoding	29768	A29768G	A	G	1	1	B.1.36.1	0.00114
noncoding	29768	A29768-	A	-	1	1	B.1.36.18	0.00042
noncoding	29768	A29768-	A	-	1	1	B.1.36.19	0.009259
noncoding	29768	A29768-	A	-	1	1	B.1.362	0.001541
noncoding	29768	A29768-	A	-	1	1	B.1.363	0.012987
noncoding	29768	A29768-	A	-	1	1	B.1.367	0.000792
noncoding	29768	A29768G	A	G	1	1	B.1.369	0.000285
noncoding	29768	A29768G	A	G	1	1	B.1.375	0.00082
noncoding	29768	A29768-	A	-	1	1	B.1.409	0.000781
noncoding	29768	A29768-	A	-	1	1	B.1.416	0.001269
noncoding	29768	A29768G	A	G	1	1	B.1.416	0.001269
noncoding	29768	A29768-	A	-	1	1	B.1.420	0.010417
noncoding	29768	A29768G	A	G	1	1	B.1.429	0.000024
noncoding	29768	A29768-	A	-	1	1	B.1.462	0.007246
noncoding	29768	A29768T	A	T	1	1	B.1.466.2	0.000391
noncoding	29768	A29768-	A	-	1	1	B.1.470	0.001404
noncoding	29768	A29768G	A	G	1	1	B.1.497	0.000315
noncoding	29768	A29768C	A	C	1	1	B.1.497	0.000315
noncoding	29768	A29768-	A	-	1	1	B.1.506	0.02381
noncoding	29768	A29768-	A	-	1	1	B.1.509	0.000866
noncoding	29768	A29768-	A	-	1	1	B.1.595.1	0.005848
noncoding	29768	A29768-	A	-	1	1	B.1.600	0.005848
noncoding	29768	A29768-	A	-	1	1	B.1.617.1	0.000129
noncoding	29768	A29768-	A	-	1	1	B.1.617.3	0.002985
noncoding	29768	A29768-	A	-	1	1	B.1.619.1	0.000641
noncoding	29768	A29768-	A	-	1	1	B.1.630	0.005236
noncoding	29768	A29768-	A	-	1	1	B.1.9.5	0.005682
noncoding	29768	A29768-	A	-	1	1	B.3.1	0.001658
noncoding	29768	A29768-	A	-	1	1	B.4.5	0.011905
noncoding	29768	A29768-	A	-	1	1	B.55	0.00295
noncoding	29768	A29768-	A	-	1	1	C.30	0.001727
noncoding	29768	A29768G	A	G	1	1	C.36.3	0.000567
noncoding	29768	A29768C	A	C	1	1	C.37	0.000116
noncoding	29768	A29768-	A	-	1	1	C.37.1	0.002618
noncoding	29768	A29768T	A	T	1	1	D.2	0.000075
noncoding	29768	A29768G	A	G	1	1	D.2	0.000075
noncoding	29768	A29768-	A	-	1	1	L.3	0.003546
noncoding	29768	A29768-	A	-	1	1	P.1.1	0.000318
noncoding	29768	A29768-	A	-	1	1	P.1.10	0.000269
noncoding	29768	A29768G	A	G	1	1	P.1.15	0.000232
noncoding	29768	A29768-	A	-	1	1	P.1.7	0.000319
noncoding	29768	A29768-	A	-	1	1	P.2	0.000187
noncoding	29768	A29768-	A	-	1	1	P.6	0.003145
noncoding	29768	A29768-	A	-	1	1	Q.1	0.000126
noncoding	29768	A29768-	A	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.