CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29766 & Codon = C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29766G29766CnoncodingGC156156129766-29766

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29766G29766CGC156156All0.00003
noncoding29766G29766CGC7676B.1.1.70.000068
noncoding29766G29766CGC2121P.10.000331
noncoding29766G29766CGC1616AY.260.000453
noncoding29766G29766CGC1010AY.40.000016
noncoding29766G29766CGC33B.1.1600.000094
noncoding29766G29766CGC22AY.230.000139
noncoding29766G29766CGC22AY.440.000012
noncoding29766G29766CGC22B.1.1.2200.003717
noncoding29766G29766CGC22B.1.1.5170.013605
noncoding29766G29766CGC22B.1.20.000018
noncoding29766G29766CGC22B.1.3510.000059
noncoding29766G29766CGC22B.1.428.30.025641
noncoding29766G29766CGC11AY.1020.000027
noncoding29766G29766CGC11AY.300.000396
noncoding29766G29766CGC11AY.430.000004
noncoding29766G29766CGC11AY.590.00053
noncoding29766G29766CGC11AY.600.000938
noncoding29766G29766CGC11B.10.000009
noncoding29766G29766CGC11B.1.10.000018
noncoding29766G29766CGC11B.1.1.3120.001912
noncoding29766G29766CGC11B.1.177.730.000566
noncoding29766G29766CGC11B.1.177.750.001041
noncoding29766G29766CGC11B.1.2430.00007
noncoding29766G29766CGC11B.1.3620.001541
noncoding29766G29766CGC11B.1.4780.011765
noncoding29766G29766CGC11B.1.5250.000113
noncoding29766G29766CGC11B.1.5820.000491
noncoding29766G29766CGC11B.40.002208

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.