CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29766

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29766	G29766-		noncoding	G	-	14613	14613	1	29766-29766
noncoding	29766	G29766T		noncoding	G	T	1164	1164	1	29766-29766
noncoding	29766	G29766A		noncoding	G	A	342	342	1	29766-29766
noncoding	29766	G29766C		noncoding	G	C	156	156	1	29766-29766

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29766	G29766-	G	-	14613	14613	All	0.002795
noncoding	29766	G29766-	G	-	3713	3713	B.1.525	0.420165
noncoding	29766	G29766-	G	-	1762	1762	B.1.1.311	0.631089
noncoding	29766	G29766-	G	-	1496	1496	AY.4	0.002328
noncoding	29766	G29766-	G	-	1458	1458	B.1.1.7	0.001305
noncoding	29766	G29766T	G	T	1164	1164	All	0.000223
noncoding	29766	G29766-	G	-	1162	1162	AY.26	0.032896
noncoding	29766	G29766-	G	-	828	828	AY.38	0.41338
noncoding	29766	G29766-	G	-	443	443	B.1.617.2	0.001668
noncoding	29766	G29766T	G	T	367	367	B.1.177.76	0.915212
noncoding	29766	G29766A	G	A	342	342	All	0.000065
noncoding	29766	G29766-	G	-	290	290	B.1.2	0.002554
noncoding	29766	G29766-	G	-	271	271	AY.5	0.005596
noncoding	29766	G29766-	G	-	238	238	AY.25	0.001432
noncoding	29766	G29766-	G	-	201	201	B.1	0.001841
noncoding	29766	G29766T	G	T	191	191	B.1.1.7	0.000171
noncoding	29766	G29766-	G	-	166	166	AY.103	0.001031
noncoding	29766	G29766C	G	C	156	156	All	0.00003
noncoding	29766	G29766-	G	-	117	117	P.1	0.001843
noncoding	29766	G29766-	G	-	116	116	AY.43	0.000514
noncoding	29766	G29766-	G	-	101	101	B.1.1	0.001832
noncoding	29766	G29766-	G	-	96	96	AY.73	0.063872
noncoding	29766	G29766-	G	-	94	94	B.1.221	0.006677
noncoding	29766	G29766-	G	-	90	90	AY.47	0.002799
noncoding	29766	G29766-	G	-	83	83	B.1.177	0.001093
noncoding	29766	G29766-	G	-	81	81	B.1.243	0.005636
noncoding	29766	G29766C	G	C	76	76	B.1.1.7	0.000068
noncoding	29766	G29766-	G	-	73	73	AY.3	0.000726
noncoding	29766	G29766A	G	A	72	72	B.1.617.2	0.000271
noncoding	29766	G29766-	G	-	64	64	B.1.160	0.001996
noncoding	29766	G29766-	G	-	59	59	AY.111	0.010806
noncoding	29766	G29766T	G	T	59	59	AY.57	0.038714
noncoding	29766	G29766-	G	-	58	58	B.1.1.519	0.002303
noncoding	29766	G29766T	G	T	51	51	AY.103	0.000317
noncoding	29766	G29766-	G	-	51	51	AY.44	0.00031
noncoding	29766	G29766-	G	-	47	47	B.1.351	0.001397
noncoding	29766	G29766-	G	-	46	46	C.16	0.04878
noncoding	29766	G29766T	G	T	45	45	AY.43	0.000199
noncoding	29766	G29766T	G	T	43	43	B.1.617.2	0.000162
noncoding	29766	G29766-	G	-	43	43	C.37	0.004991
noncoding	29766	G29766A	G	A	42	42	B.1.1.7	0.000038
noncoding	29766	G29766-	G	-	39	39	AY.39	0.000964
noncoding	29766	G29766-	G	-	36	36	B.1.1.351	0.100559
noncoding	29766	G29766T	G	T	35	35	B.1.177	0.000461
noncoding	29766	G29766A	G	A	31	31	AY.120	0.001153
noncoding	29766	G29766-	G	-	31	31	B.1.429	0.000729
noncoding	29766	G29766A	G	A	28	28	AY.113	0.003987
noncoding	29766	G29766-	G	-	28	28	AY.29	0.000442
noncoding	29766	G29766-	G	-	28	28	B.1.526	0.000658
noncoding	29766	G29766-	G	-	27	27	B.1.346	0.035387
noncoding	29766	G29766A	G	A	25	25	AY.25	0.00015
noncoding	29766	G29766-	G	-	24	24	AY.102	0.000636
noncoding	29766	G29766T	G	T	23	23	B.1	0.000211
noncoding	29766	G29766-	G	-	22	22	B.1.1.368	0.067901
noncoding	29766	G29766T	G	T	22	22	B.1.221	0.001563
noncoding	29766	G29766A	G	A	21	21	AY.102	0.000557
noncoding	29766	G29766-	G	-	21	21	B.1.305	0.045161
noncoding	29766	G29766C	G	C	21	21	P.1	0.000331
noncoding	29766	G29766-	G	-	19	19	AY.92	0.005458
noncoding	29766	G29766-	G	-	18	18	AY.20	0.0007
noncoding	29766	G29766-	G	-	18	18	AY.42	0.000724
noncoding	29766	G29766-	G	-	18	18	B.1.258	0.001198
noncoding	29766	G29766-	G	-	17	17	AY.5.4	0.004704
noncoding	29766	G29766-	G	-	17	17	AY.6	0.000699
noncoding	29766	G29766-	G	-	17	17	B.1.1.28	0.005291
noncoding	29766	G29766C	G	C	16	16	AY.26	0.000453
noncoding	29766	G29766T	G	T	16	16	AY.4	0.000025
noncoding	29766	G29766T	G	T	16	16	AY.44	0.000097
noncoding	29766	G29766-	G	-	16	16	AY.75.1	0.002885
noncoding	29766	G29766-	G	-	16	16	B.1.36.19	0.148148
noncoding	29766	G29766T	G	T	15	15	Q.3	0.002175
noncoding	29766	G29766-	G	-	14	14	AY.100	0.000644
noncoding	29766	G29766-	G	-	14	14	AY.120	0.000521
noncoding	29766	G29766A	G	A	14	14	AY.4	0.000022
noncoding	29766	G29766-	G	-	14	14	AY.61	0.001467
noncoding	29766	G29766-	G	-	14	14	B.1.1.434	0.00488
noncoding	29766	G29766T	G	T	14	14	B.1.160	0.000437
noncoding	29766	G29766-	G	-	14	14	B.1.240	0.003018
noncoding	29766	G29766-	G	-	14	14	B.1.404	0.018229
noncoding	29766	G29766-	G	-	14	14	B.1.596	0.00122
noncoding	29766	G29766-	G	-	13	13	AY.119	0.000459
noncoding	29766	G29766-	G	-	13	13	B.1.1.222	0.002652
noncoding	29766	G29766-	G	-	13	13	B.1.1.420	0.013078
noncoding	29766	G29766-	G	-	13	13	B.1.581	0.122642
noncoding	29766	G29766-	G	-	13	13	B.1.621	0.001151
noncoding	29766	G29766-	G	-	12	12	AY.4.2	0.00026
noncoding	29766	G29766-	G	-	12	12	AY.9	0.000811
noncoding	29766	G29766-	G	-	12	12	B.1.1.416	0.01086
noncoding	29766	G29766-	G	-	12	12	B.1.177.75	0.012487
noncoding	29766	G29766T	G	T	12	12	B.1.2	0.000106
noncoding	29766	G29766-	G	-	12	12	B.1.36	0.001751
noncoding	29766	G29766-	G	-	11	11	AY.118	0.000689
noncoding	29766	G29766-	G	-	11	11	AY.45	0.001339
noncoding	29766	G29766-	G	-	11	11	B.1.1.214	0.00061
noncoding	29766	G29766T	G	T	11	11	B.1.177.4	0.002322
noncoding	29766	G29766-	G	-	11	11	B.1.36.29	0.005691
noncoding	29766	G29766T	G	T	11	11	P.2	0.002053
noncoding	29766	G29766-	G	-	10	10	AY.117	0.000845
noncoding	29766	G29766C	G	C	10	10	AY.4	0.000016
noncoding	29766	G29766-	G	-	10	10	AY.74	0.001156
noncoding	29766	G29766-	G	-	10	10	AY.75	0.00056
noncoding	29766	G29766A	G	A	10	10	AY.98.1	0.000484
noncoding	29766	G29766-	G	-	10	10	B.1.427	0.000505
noncoding	29766	G29766T	G	T	10	10	P.1.2	0.011561
noncoding	29766	G29766T	G	T	9	9	B.1.1.222	0.001836
noncoding	29766	G29766-	G	-	9	9	B.1.1.318	0.002716
noncoding	29766	G29766-	G	-	9	9	B.1.160.14	0.019068
noncoding	29766	G29766A	G	A	9	9	B.1.561	0.003573
noncoding	29766	G29766-	G	-	9	9	B.1.599	0.032847
noncoding	29766	G29766-	G	-	9	9	D.2	0.000675
noncoding	29766	G29766T	G	T	8	8	AY.102	0.000212
noncoding	29766	G29766-	G	-	8	8	AY.23	0.000558
noncoding	29766	G29766-	G	-	8	8	AY.85	0.003417
noncoding	29766	G29766-	G	-	8	8	AY.9.2	0.000294
noncoding	29766	G29766-	G	-	8	8	AY.98.1	0.000387
noncoding	29766	G29766A	G	A	8	8	B.1	0.000073
noncoding	29766	G29766T	G	T	8	8	B.1.1	0.000145
noncoding	29766	G29766-	G	-	8	8	B.1.1.303	0.022099
noncoding	29766	G29766-	G	-	8	8	B.1.1.33	0.003367
noncoding	29766	G29766-	G	-	8	8	B.1.234	0.001056
noncoding	29766	G29766T	G	T	8	8	B.1.265	0.010165
noncoding	29766	G29766T	G	T	8	8	B.1.429	0.000188
noncoding	29766	G29766-	G	-	8	8	B.1.623	0.004292
noncoding	29766	G29766T	G	T	8	8	C.16	0.008484
noncoding	29766	G29766T	G	T	8	8	P.1	0.000126
noncoding	29766	G29766-	G	-	8	8	P.1.14	0.000382
noncoding	29766	G29766-	G	-	7	7	AY.114	0.001618
noncoding	29766	G29766-	G	-	7	7	AY.46.5	0.001389
noncoding	29766	G29766-	G	-	7	7	B.1.1.317	0.002882
noncoding	29766	G29766T	G	T	7	7	B.1.1.519	0.000278
noncoding	29766	G29766A	G	A	7	7	B.1.258.3	0.011725
noncoding	29766	G29766-	G	-	7	7	B.1.36.22	0.008454
noncoding	29766	G29766-	G	-	6	6	AY.14	0.000528
noncoding	29766	G29766T	G	T	6	6	AY.20	0.000233
noncoding	29766	G29766-	G	-	6	6	AY.34	0.000582
noncoding	29766	G29766-	G	-	6	6	AY.46	0.000624
noncoding	29766	G29766-	G	-	6	6	AY.46.4	0.000987
noncoding	29766	G29766A	G	A	6	6	AY.5.4	0.00166
noncoding	29766	G29766-	G	-	6	6	B	0.000767
noncoding	29766	G29766-	G	-	6	6	B.1.1.316	0.00555
noncoding	29766	G29766-	G	-	6	6	B.1.110.3	0.00431
noncoding	29766	G29766-	G	-	6	6	B.1.177.82	0.002864
noncoding	29766	G29766-	G	-	6	6	B.1.241	0.00487
noncoding	29766	G29766-	G	-	6	6	B.1.36.31	0.010508
noncoding	29766	G29766T	G	T	6	6	B.1.525	0.000679
noncoding	29766	G29766T	G	T	6	6	B.1.558	0.027397
noncoding	29766	G29766-	G	-	6	6	B.1.595	0.001566
noncoding	29766	G29766-	G	-	6	6	P.1.16	0.002245
noncoding	29766	G29766-	G	-	5	5	A	0.001935
noncoding	29766	G29766-	G	-	5	5	AY.113	0.000712
noncoding	29766	G29766-	G	-	5	5	AY.30	0.001979
noncoding	29766	G29766-	G	-	5	5	AY.35	0.001165
noncoding	29766	G29766T	G	T	5	5	AY.4.3	0.004209
noncoding	29766	G29766-	G	-	5	5	AY.54	0.000477
noncoding	29766	G29766-	G	-	5	5	AY.98	0.000395
noncoding	29766	G29766-	G	-	5	5	B.1.1.231	0.01548
noncoding	29766	G29766T	G	T	5	5	B.1.1.269	0.006766
noncoding	29766	G29766A	G	A	5	5	B.1.243	0.000348
noncoding	29766	G29766T	G	T	5	5	B.1.258	0.000333
noncoding	29766	G29766-	G	-	5	5	B.1.258.17	0.00052
noncoding	29766	G29766T	G	T	5	5	B.1.541	0.022124
noncoding	29766	G29766-	G	-	5	5	B.1.575	0.001517
noncoding	29766	G29766T	G	T	5	5	C.37	0.00058
noncoding	29766	G29766A	G	A	4	4	AY.116	0.001147
noncoding	29766	G29766-	G	-	4	4	AY.12	0.001264
noncoding	29766	G29766T	G	T	4	4	AY.29	0.000063
noncoding	29766	G29766T	G	T	4	4	AY.3	0.00004
noncoding	29766	G29766-	G	-	4	4	AY.59	0.002119
noncoding	29766	G29766-	G	-	4	4	AY.65	0.002132
noncoding	29766	G29766-	G	-	4	4	AY.69	0.000747
noncoding	29766	G29766-	G	-	4	4	B.1.1.1	0.001307
noncoding	29766	G29766-	G	-	4	4	B.1.1.129	0.036697
noncoding	29766	G29766-	G	-	4	4	B.1.1.298	0.003448
noncoding	29766	G29766-	G	-	4	4	B.1.1.306	0.001754
noncoding	29766	G29766-	G	-	4	4	B.1.1.464	0.005891
noncoding	29766	G29766-	G	-	4	4	B.1.1.50	0.002716
noncoding	29766	G29766-	G	-	4	4	B.1.104	0.01476
noncoding	29766	G29766-	G	-	4	4	B.1.160.33	0.017699
noncoding	29766	G29766A	G	A	4	4	B.1.2	0.000035
noncoding	29766	G29766A	G	A	4	4	B.1.221	0.000284
noncoding	29766	G29766T	G	T	4	4	B.1.258.17	0.000416
noncoding	29766	G29766T	G	T	4	4	B.1.311	0.001098
noncoding	29766	G29766-	G	-	4	4	B.1.311	0.001098
noncoding	29766	G29766T	G	T	4	4	B.1.509	0.003463
noncoding	29766	G29766-	G	-	4	4	B.1.582	0.001963
noncoding	29766	G29766-	G	-	4	4	B.1.609	0.001918
noncoding	29766	G29766-	G	-	4	4	C.1	0.009569
noncoding	29766	G29766A	G	A	4	4	P.1	0.000063
noncoding	29766	G29766T	G	T	4	4	P.1.14	0.000191
noncoding	29766	G29766-	G	-	4	4	P.2	0.000747
noncoding	29766	G29766-	G	-	3	3	A.2.5	0.001497
noncoding	29766	G29766T	G	T	3	3	AD.2	0.000657
noncoding	29766	G29766-	G	-	3	3	AY.109	0.002219
noncoding	29766	G29766T	G	T	3	3	AY.118	0.000188
noncoding	29766	G29766-	G	-	3	3	AY.13	0.000483
noncoding	29766	G29766-	G	-	3	3	AY.24	0.001293
noncoding	29766	G29766-	G	-	3	3	AY.3.1	0.000256
noncoding	29766	G29766T	G	T	3	3	AY.33	0.0002
noncoding	29766	G29766-	G	-	3	3	AY.40	0.002893
noncoding	29766	G29766A	G	A	3	3	AY.44	0.000018
noncoding	29766	G29766-	G	-	3	3	AY.46.6	0.000217
noncoding	29766	G29766T	G	T	3	3	AY.5	0.000062
noncoding	29766	G29766-	G	-	3	3	AY.62	0.001307
noncoding	29766	G29766-	G	-	3	3	AY.7	0.000588
noncoding	29766	G29766-	G	-	3	3	AY.70	0.000626
noncoding	29766	G29766-	G	-	3	3	AY.84	0.001312
noncoding	29766	G29766-	G	-	3	3	AY.99.2	0.000276
noncoding	29766	G29766A	G	A	3	3	B.1.1	0.000054
noncoding	29766	G29766-	G	-	3	3	B.1.1.170	0.003741
noncoding	29766	G29766-	G	-	3	3	B.1.1.192	0.006928
noncoding	29766	G29766-	G	-	3	3	B.1.1.236	0.02069
noncoding	29766	G29766-	G	-	3	3	B.1.1.37	0.000579
noncoding	29766	G29766-	G	-	3	3	B.1.1.428	0.028302
noncoding	29766	G29766-	G	-	3	3	B.1.1.432	0.003797
noncoding	29766	G29766-	G	-	3	3	B.1.1.46	0.0131
noncoding	29766	G29766-	G	-	3	3	B.1.1.528	0.014423
noncoding	29766	G29766-	G	-	3	3	B.1.145	0.157895
noncoding	29766	G29766C	G	C	3	3	B.1.160	0.000094
noncoding	29766	G29766-	G	-	3	3	B.1.177.21	0.000229
noncoding	29766	G29766-	G	-	3	3	B.1.177.57	0.000843
noncoding	29766	G29766-	G	-	3	3	B.1.177.86	0.00055
noncoding	29766	G29766-	G	-	3	3	B.1.210	0.006397
noncoding	29766	G29766-	G	-	3	3	B.1.214.2	0.001799
noncoding	29766	G29766-	G	-	3	3	B.1.36.16	0.004274
noncoding	29766	G29766-	G	-	3	3	B.1.400	0.001287
noncoding	29766	G29766-	G	-	3	3	B.1.416.1	0.004687
noncoding	29766	G29766-	G	-	3	3	B.1.44	0.025
noncoding	29766	G29766-	G	-	3	3	B.1.590	0.013636
noncoding	29766	G29766-	G	-	3	3	B.1.637	0.000219
noncoding	29766	G29766-	G	-	3	3	B.1.9.4	0.018405
noncoding	29766	G29766-	G	-	3	3	B.1.91	0.006224
noncoding	29766	G29766T	G	T	3	3	C.36.3	0.001702
noncoding	29766	G29766-	G	-	3	3	N.5	0.0053
noncoding	29766	G29766A	G	A	3	3	P.1.15	0.000697
noncoding	29766	G29766-	G	-	3	3	P.1.15	0.000697
noncoding	29766	G29766T	G	T	3	3	P.1.4	0.00293
noncoding	29766	G29766-	G	-	3	3	Q.1	0.000379
noncoding	29766	G29766-	G	-	3	3	Q.3	0.000435
noncoding	29766	G29766-	G	-	3	3	R.1	0.00027
noncoding	29766	G29766A	G	A	2	2	AY.103	0.000012
noncoding	29766	G29766-	G	-	2	2	AY.105	0.001286
noncoding	29766	G29766-	G	-	2	2	AY.106	0.00067
noncoding	29766	G29766T	G	T	2	2	AY.107	0.000932
noncoding	29766	G29766-	G	-	2	2	AY.110	0.000225
noncoding	29766	G29766T	G	T	2	2	AY.119	0.000071
noncoding	29766	G29766-	G	-	2	2	AY.16	0.000759
noncoding	29766	G29766-	G	-	2	2	AY.19	0.002281
noncoding	29766	G29766C	G	C	2	2	AY.23	0.000139
noncoding	29766	G29766T	G	T	2	2	AY.24	0.000862
noncoding	29766	G29766T	G	T	2	2	AY.25	0.000012
noncoding	29766	G29766T	G	T	2	2	AY.30	0.000791
noncoding	29766	G29766-	G	-	2	2	AY.33	0.000134
noncoding	29766	G29766T	G	T	2	2	AY.34	0.000194
noncoding	29766	G29766-	G	-	2	2	AY.36	0.000296
noncoding	29766	G29766-	G	-	2	2	AY.39.1	0.000079
noncoding	29766	G29766T	G	T	2	2	AY.42	0.00008
noncoding	29766	G29766A	G	A	2	2	AY.43	0.000009
noncoding	29766	G29766C	G	C	2	2	AY.44	0.000012
noncoding	29766	G29766-	G	-	2	2	AY.46.3	0.001867
noncoding	29766	G29766-	G	-	2	2	AY.5.3	0.000675
noncoding	29766	G29766-	G	-	2	2	AY.52	0.001629
noncoding	29766	G29766-	G	-	2	2	AY.56	0.00321
noncoding	29766	G29766T	G	T	2	2	AY.6	0.000082
noncoding	29766	G29766-	G	-	2	2	AY.95	0.001522
noncoding	29766	G29766-	G	-	2	2	AZ.2	0.001642
noncoding	29766	G29766-	G	-	2	2	AZ.4	0.006711
noncoding	29766	G29766-	G	-	2	2	B.1.1.172	0.036364
noncoding	29766	G29766-	G	-	2	2	B.1.1.174	0.006757
noncoding	29766	G29766T	G	T	2	2	B.1.1.207	0.002364
noncoding	29766	G29766-	G	-	2	2	B.1.1.216	0.001781
noncoding	29766	G29766C	G	C	2	2	B.1.1.220	0.003717
noncoding	29766	G29766-	G	-	2	2	B.1.1.232	0.00363
noncoding	29766	G29766-	G	-	2	2	B.1.1.279	0.002242
noncoding	29766	G29766-	G	-	2	2	B.1.1.294	0.002532
noncoding	29766	G29766-	G	-	2	2	B.1.1.348	0.001592
noncoding	29766	G29766-	G	-	2	2	B.1.1.354	0.008772
noncoding	29766	G29766-	G	-	2	2	B.1.1.39	0.001019
noncoding	29766	G29766C	G	C	2	2	B.1.1.517	0.013605
noncoding	29766	G29766T	G	T	2	2	B.1.1.70	0.000682
noncoding	29766	G29766-	G	-	2	2	B.1.177.12	0.000303
noncoding	29766	G29766T	G	T	2	2	B.1.177.15	0.001262
noncoding	29766	G29766-	G	-	2	2	B.1.177.44	0.001038
noncoding	29766	G29766-	G	-	2	2	B.1.177.54	0.001213
noncoding	29766	G29766T	G	T	2	2	B.1.177.60	0.000437
noncoding	29766	G29766-	G	-	2	2	B.1.177.65	0.001331
noncoding	29766	G29766T	G	T	2	2	B.1.177.9	0.002663
noncoding	29766	G29766C	G	C	2	2	B.1.2	0.000018
noncoding	29766	G29766-	G	-	2	2	B.1.206	0.001631
noncoding	29766	G29766-	G	-	2	2	B.1.258.3	0.00335
noncoding	29766	G29766-	G	-	2	2	B.1.298	0.004228
noncoding	29766	G29766C	G	C	2	2	B.1.351	0.000059
noncoding	29766	G29766-	G	-	2	2	B.1.351.3	0.001753
noncoding	29766	G29766T	G	T	2	2	B.1.36	0.000292
noncoding	29766	G29766-	G	-	2	2	B.1.36.17	0.000988
noncoding	29766	G29766T	G	T	2	2	B.1.36.29	0.001035
noncoding	29766	G29766A	G	A	2	2	B.1.36.8	0.002
noncoding	29766	G29766-	G	-	2	2	B.1.36.8	0.002
noncoding	29766	G29766-	G	-	2	2	B.1.396	0.001411
noncoding	29766	G29766T	G	T	2	2	B.1.427	0.000101
noncoding	29766	G29766C	G	C	2	2	B.1.428.3	0.025641
noncoding	29766	G29766A	G	A	2	2	B.1.429	0.000047
noncoding	29766	G29766-	G	-	2	2	B.1.436	0.002058
noncoding	29766	G29766-	G	-	2	2	B.1.441	0.019231
noncoding	29766	G29766A	G	A	2	2	B.1.525	0.000226
noncoding	29766	G29766-	G	-	2	2	B.1.541	0.00885
noncoding	29766	G29766-	G	-	2	2	B.1.564.1	0.003155
noncoding	29766	G29766-	G	-	2	2	B.1.565	0.001621
noncoding	29766	G29766-	G	-	2	2	B.1.588	0.00182
noncoding	29766	G29766A	G	A	2	2	B.1.596	0.000174
noncoding	29766	G29766-	G	-	2	2	B.1.617.1	0.000258
noncoding	29766	G29766T	G	T	2	2	B.1.637	0.000146
noncoding	29766	G29766-	G	-	2	2	B.31	0.007463
noncoding	29766	G29766-	G	-	2	2	B.39	0.004662
noncoding	29766	G29766-	G	-	2	2	B.40	0.000729
noncoding	29766	G29766-	G	-	2	2	C.3	0.015267
noncoding	29766	G29766-	G	-	2	2	C.36.3	0.001134
noncoding	29766	G29766-	G	-	2	2	C.38	0.016129
noncoding	29766	G29766-	G	-	2	2	P.1.13	0.001797
noncoding	29766	G29766-	G	-	2	2	P.1.17	0.000324
noncoding	29766	G29766A	G	A	2	2	R.1	0.00018
noncoding	29766	G29766A	G	A	1	1	A.2.5	0.000499
noncoding	29766	G29766A	G	A	1	1	A.9	0.045455
noncoding	29766	G29766-	G	-	1	1	AD.2	0.000219
noncoding	29766	G29766-	G	-	1	1	AK.2	0.045455
noncoding	29766	G29766-	G	-	1	1	AY.10	0.00053
noncoding	29766	G29766C	G	C	1	1	AY.102	0.000027
noncoding	29766	G29766T	G	T	1	1	AY.108	0.001103
noncoding	29766	G29766-	G	-	1	1	AY.116	0.000287
noncoding	29766	G29766T	G	T	1	1	AY.117	0.000085
noncoding	29766	G29766A	G	A	1	1	AY.118	0.000063
noncoding	29766	G29766-	G	-	1	1	AY.120.1	0.000321
noncoding	29766	G29766T	G	T	1	1	AY.21	0.001898
noncoding	29766	G29766A	G	A	1	1	AY.23	0.00007
noncoding	29766	G29766-	G	-	1	1	AY.27	0.000065
noncoding	29766	G29766-	G	-	1	1	AY.29.1	0.000221
noncoding	29766	G29766C	G	C	1	1	AY.30	0.000396
noncoding	29766	G29766A	G	A	1	1	AY.33	0.000067
noncoding	29766	G29766T	G	T	1	1	AY.37	0.000316
noncoding	29766	G29766A	G	A	1	1	AY.39	0.000025
noncoding	29766	G29766A	G	A	1	1	AY.4.2	0.000022
noncoding	29766	G29766T	G	T	1	1	AY.4.2	0.000022
noncoding	29766	G29766-	G	-	1	1	AY.4.2.1	0.000149
noncoding	29766	G29766T	G	T	1	1	AY.4.5	0.000107
noncoding	29766	G29766T	G	T	1	1	AY.40	0.000964
noncoding	29766	G29766C	G	C	1	1	AY.43	0.000004
noncoding	29766	G29766A	G	A	1	1	AY.45	0.000122
noncoding	29766	G29766T	G	T	1	1	AY.46.2	0.000635
noncoding	29766	G29766A	G	A	1	1	AY.47	0.000031
noncoding	29766	G29766-	G	-	1	1	AY.48	0.000465
noncoding	29766	G29766A	G	A	1	1	AY.5	0.000021
noncoding	29766	G29766-	G	-	1	1	AY.51	0.000909
noncoding	29766	G29766T	G	T	1	1	AY.53	0.000288
noncoding	29766	G29766-	G	-	1	1	AY.55	0.000917
noncoding	29766	G29766A	G	A	1	1	AY.58	0.000907
noncoding	29766	G29766C	G	C	1	1	AY.59	0.00053
noncoding	29766	G29766C	G	C	1	1	AY.60	0.000938
noncoding	29766	G29766A	G	A	1	1	AY.62	0.000436
noncoding	29766	G29766T	G	T	1	1	AY.64	0.000595
noncoding	29766	G29766-	G	-	1	1	AY.67	0.000464
noncoding	29766	G29766T	G	T	1	1	AY.69	0.000187
noncoding	29766	G29766T	G	T	1	1	AY.70	0.000209
noncoding	29766	G29766A	G	A	1	1	AY.72	0.001361
noncoding	29766	G29766A	G	A	1	1	AY.73	0.000665
noncoding	29766	G29766T	G	T	1	1	AY.73	0.000665
noncoding	29766	G29766T	G	T	1	1	AY.74	0.000116
noncoding	29766	G29766T	G	T	1	1	AY.75	0.000056
noncoding	29766	G29766-	G	-	1	1	AY.80	0.001129
noncoding	29766	G29766-	G	-	1	1	AY.81	0.001992
noncoding	29766	G29766-	G	-	1	1	AY.87	0.000833
noncoding	29766	G29766-	G	-	1	1	AY.9.1	0.000084
noncoding	29766	G29766C	G	C	1	1	B.1	0.000009
noncoding	29766	G29766C	G	C	1	1	B.1.1	0.000018
noncoding	29766	G29766-	G	-	1	1	B.1.1.10	0.001115
noncoding	29766	G29766-	G	-	1	1	B.1.1.139	0.022727
noncoding	29766	G29766-	G	-	1	1	B.1.1.166	0.033333
noncoding	29766	G29766-	G	-	1	1	B.1.1.189	0.001513
noncoding	29766	G29766-	G	-	1	1	B.1.1.196	0.005714
noncoding	29766	G29766-	G	-	1	1	B.1.1.197	0.037037
noncoding	29766	G29766-	G	-	1	1	B.1.1.218	0.007692
noncoding	29766	G29766-	G	-	1	1	B.1.1.229	0.005747
noncoding	29766	G29766-	G	-	1	1	B.1.1.25	0.000569
noncoding	29766	G29766-	G	-	1	1	B.1.1.265	0.003155
noncoding	29766	G29766A	G	A	1	1	B.1.1.27	0.00565
noncoding	29766	G29766-	G	-	1	1	B.1.1.274	0.005051
noncoding	29766	G29766-	G	-	1	1	B.1.1.277	0.000759
noncoding	29766	G29766T	G	T	1	1	B.1.1.28	0.000311
noncoding	29766	G29766A	G	A	1	1	B.1.1.28	0.000311
noncoding	29766	G29766-	G	-	1	1	B.1.1.286	0.002899
noncoding	29766	G29766T	G	T	1	1	B.1.1.29	0.010309
noncoding	29766	G29766A	G	A	1	1	B.1.1.306	0.000438
noncoding	29766	G29766C	G	C	1	1	B.1.1.312	0.001912
noncoding	29766	G29766T	G	T	1	1	B.1.1.33	0.000421
noncoding	29766	G29766-	G	-	1	1	B.1.1.337	0.003597
noncoding	29766	G29766-	G	-	1	1	B.1.1.353	0.020833
noncoding	29766	G29766T	G	T	1	1	B.1.1.388	0.045455
noncoding	29766	G29766-	G	-	1	1	B.1.1.409	0.002833
noncoding	29766	G29766T	G	T	1	1	B.1.1.419	0.007407
noncoding	29766	G29766T	G	T	1	1	B.1.1.433	0.001425
noncoding	29766	G29766-	G	-	1	1	B.1.1.517	0.006803
noncoding	29766	G29766-	G	-	1	1	B.1.1.53	0.013699
noncoding	29766	G29766-	G	-	1	1	B.1.1.54	0.003021
noncoding	29766	G29766-	G	-	1	1	B.1.1.63	0.000386
noncoding	29766	G29766-	G	-	1	1	B.1.1.75	0.010638
noncoding	29766	G29766-	G	-	1	1	B.1.1.99	0.02381
noncoding	29766	G29766-	G	-	1	1	B.1.110	0.004525
noncoding	29766	G29766-	G	-	1	1	B.1.111	0.001175
noncoding	29766	G29766-	G	-	1	1	B.1.119	0.010526
noncoding	29766	G29766T	G	T	1	1	B.1.142	0.002899
noncoding	29766	G29766-	G	-	1	1	B.1.160.16	0.000929
noncoding	29766	G29766-	G	-	1	1	B.1.160.26	0.002421
noncoding	29766	G29766-	G	-	1	1	B.1.160.32	0.004292
noncoding	29766	G29766-	G	-	1	1	B.1.177.11	0.001698
noncoding	29766	G29766T	G	T	1	1	B.1.177.17	0.000821
noncoding	29766	G29766-	G	-	1	1	B.1.177.32	0.00135
noncoding	29766	G29766T	G	T	1	1	B.1.177.33	0.001645
noncoding	29766	G29766-	G	-	1	1	B.1.177.4	0.000211
noncoding	29766	G29766-	G	-	1	1	B.1.177.42	0.000894
noncoding	29766	G29766A	G	A	1	1	B.1.177.45	0.000381
noncoding	29766	G29766T	G	T	1	1	B.1.177.50	0.004695
noncoding	29766	G29766-	G	-	1	1	B.1.177.6	0.000977
noncoding	29766	G29766A	G	A	1	1	B.1.177.63	0.002703
noncoding	29766	G29766-	G	-	1	1	B.1.177.7	0.000165
noncoding	29766	G29766C	G	C	1	1	B.1.177.73	0.000566
noncoding	29766	G29766C	G	C	1	1	B.1.177.75	0.001041
noncoding	29766	G29766-	G	-	1	1	B.1.177.76	0.002494
noncoding	29766	G29766-	G	-	1	1	B.1.177.77	0.000726
noncoding	29766	G29766-	G	-	1	1	B.1.177.79	0.002342
noncoding	29766	G29766-	G	-	1	1	B.1.177.81	0.000189
noncoding	29766	G29766-	G	-	1	1	B.1.177.85	0.005435
noncoding	29766	G29766-	G	-	1	1	B.1.177.87	0.000728
noncoding	29766	G29766-	G	-	1	1	B.1.178	0.02381
noncoding	29766	G29766-	G	-	1	1	B.1.180	0.05
noncoding	29766	G29766-	G	-	1	1	B.1.192	0.009259
noncoding	29766	G29766A	G	A	1	1	B.1.221.2	0.004016
noncoding	29766	G29766-	G	-	1	1	B.1.222	0.001692
noncoding	29766	G29766C	G	C	1	1	B.1.243	0.00007
noncoding	29766	G29766-	G	-	1	1	B.1.258.24	0.010753
noncoding	29766	G29766-	G	-	1	1	B.1.291	0.019231
noncoding	29766	G29766-	G	-	1	1	B.1.329	0.000608
noncoding	29766	G29766T	G	T	1	1	B.1.351	0.00003
noncoding	29766	G29766-	G	-	1	1	B.1.351.2	0.000303
noncoding	29766	G29766-	G	-	1	1	B.1.36.18	0.00042
noncoding	29766	G29766-	G	-	1	1	B.1.36.26	0.002857
noncoding	29766	G29766T	G	T	1	1	B.1.36.35	0.002604
noncoding	29766	G29766-	G	-	1	1	B.1.361	0.001289
noncoding	29766	G29766C	G	C	1	1	B.1.362	0.001541
noncoding	29766	G29766-	G	-	1	1	B.1.367	0.000792
noncoding	29766	G29766-	G	-	1	1	B.1.408	0.00369
noncoding	29766	G29766-	G	-	1	1	B.1.409	0.000781
noncoding	29766	G29766-	G	-	1	1	B.1.416	0.001269
noncoding	29766	G29766-	G	-	1	1	B.1.420	0.010417
noncoding	29766	G29766T	G	T	1	1	B.1.424	0.008065
noncoding	29766	G29766-	G	-	1	1	B.1.429.1	0.012048
noncoding	29766	G29766T	G	T	1	1	B.1.438.1	0.000107
noncoding	29766	G29766-	G	-	1	1	B.1.446	0.02
noncoding	29766	G29766A	G	A	1	1	B.1.459	0.004082
noncoding	29766	G29766-	G	-	1	1	B.1.466.1	0.007194
noncoding	29766	G29766-	G	-	1	1	B.1.470	0.001404
noncoding	29766	G29766A	G	A	1	1	B.1.470	0.001404
noncoding	29766	G29766C	G	C	1	1	B.1.478	0.011765
noncoding	29766	G29766-	G	-	1	1	B.1.506	0.02381
noncoding	29766	G29766-	G	-	1	1	B.1.509	0.000866
noncoding	29766	G29766-	G	-	1	1	B.1.524	0.001406
noncoding	29766	G29766C	G	C	1	1	B.1.525	0.000113
noncoding	29766	G29766A	G	A	1	1	B.1.526	0.000024
noncoding	29766	G29766T	G	T	1	1	B.1.537	0.02
noncoding	29766	G29766T	G	T	1	1	B.1.560	0.00463
noncoding	29766	G29766-	G	-	1	1	B.1.561	0.000397
noncoding	29766	G29766-	G	-	1	1	B.1.576	0.000907
noncoding	29766	G29766C	G	C	1	1	B.1.582	0.000491
noncoding	29766	G29766-	G	-	1	1	B.1.595.1	0.005848
noncoding	29766	G29766-	G	-	1	1	B.1.600	0.005848
noncoding	29766	G29766T	G	T	1	1	B.1.609	0.000479
noncoding	29766	G29766-	G	-	1	1	B.1.617.3	0.002985
noncoding	29766	G29766-	G	-	1	1	B.1.619.1	0.000641
noncoding	29766	G29766-	G	-	1	1	B.1.620	0.000946
noncoding	29766	G29766T	G	T	1	1	B.1.621	0.000089
noncoding	29766	G29766T	G	T	1	1	B.1.623	0.000536
noncoding	29766	G29766-	G	-	1	1	B.1.627	0.00202
noncoding	29766	G29766-	G	-	1	1	B.1.628	0.000352
noncoding	29766	G29766T	G	T	1	1	B.1.628	0.000352
noncoding	29766	G29766-	G	-	1	1	B.1.630	0.005236
noncoding	29766	G29766-	G	-	1	1	B.1.81	0.021277
noncoding	29766	G29766-	G	-	1	1	B.1.9.5	0.005682
noncoding	29766	G29766-	G	-	1	1	B.27	0.015385
noncoding	29766	G29766-	G	-	1	1	B.3.1	0.001658
noncoding	29766	G29766C	G	C	1	1	B.4	0.002208
noncoding	29766	G29766-	G	-	1	1	B.4.5	0.011905
noncoding	29766	G29766-	G	-	1	1	B.55	0.00295
noncoding	29766	G29766T	G	T	1	1	B.6	0.00091
noncoding	29766	G29766-	G	-	1	1	B.6	0.00091
noncoding	29766	G29766-	G	-	1	1	C.30	0.001727
noncoding	29766	G29766-	G	-	1	1	C.35	0.000774
noncoding	29766	G29766-	G	-	1	1	C.37.1	0.002618
noncoding	29766	G29766T	G	T	1	1	D.2	0.000075
noncoding	29766	G29766-	G	-	1	1	L.3	0.003546
noncoding	29766	G29766A	G	A	1	1	P.1.1	0.000318
noncoding	29766	G29766T	G	T	1	1	P.1.1	0.000318
noncoding	29766	G29766-	G	-	1	1	P.1.10	0.000269
noncoding	29766	G29766-	G	-	1	1	P.1.12	0.000484
noncoding	29766	G29766-	G	-	1	1	P.1.4	0.000977
noncoding	29766	G29766-	G	-	1	1	P.1.7	0.000319
noncoding	29766	G29766T	G	T	1	1	P.1.7	0.000319
noncoding	29766	G29766A	G	A	1	1	P.2	0.000187
noncoding	29766	G29766-	G	-	1	1	P.3	0.001595
noncoding	29766	G29766-	G	-	1	1	P.6	0.003145
noncoding	29766	G29766-	G	-	1	1	P.7	0.004367
noncoding	29766	G29766T	G	T	1	1	Q.4	0.000455
noncoding	29766	G29766-	G	-	1	1	U.3	0.003861
noncoding	29766	G29766-	G	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.