CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29764 | G29764A | noncoding | G | A | 46049 | 46049 | 1 | 29764-29764 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29764 | G29764A | G | A | 46049 | 46049 | All | 0.008807 |
noncoding | 29764 | G29764A | G | A | 43691 | 43691 | B.1.1.7 | 0.039113 |
noncoding | 29764 | G29764A | G | A | 1111 | 1111 | AY.4.2 | 0.024096 |
noncoding | 29764 | G29764A | G | A | 249 | 249 | Q.8 | 0.041062 |
noncoding | 29764 | G29764A | G | A | 107 | 107 | AY.98.1 | 0.005182 |
noncoding | 29764 | G29764A | G | A | 84 | 84 | B.1.617.2 | 0.000316 |
noncoding | 29764 | G29764A | G | A | 68 | 68 | B.1.265 | 0.086404 |
noncoding | 29764 | G29764A | G | A | 66 | 66 | AY.4 | 0.000103 |
noncoding | 29764 | G29764A | G | A | 59 | 59 | AY.103 | 0.000366 |
noncoding | 29764 | G29764A | G | A | 50 | 50 | B.1 | 0.000458 |
noncoding | 29764 | G29764A | G | A | 42 | 42 | B.1.1 | 0.000762 |
noncoding | 29764 | G29764A | G | A | 39 | 39 | P.1 | 0.000614 |
noncoding | 29764 | G29764A | G | A | 32 | 32 | B.1.429 | 0.000753 |
noncoding | 29764 | G29764A | G | A | 30 | 30 | C.26 | 0.220588 |
noncoding | 29764 | G29764A | G | A | 25 | 25 | B.1.1.1 | 0.008167 |
noncoding | 29764 | G29764A | G | A | 23 | 23 | AY.43 | 0.000102 |
noncoding | 29764 | G29764A | G | A | 23 | 23 | B.1.509 | 0.019913 |
noncoding | 29764 | G29764A | G | A | 23 | 23 | B.1.567 | 0.076667 |
noncoding | 29764 | G29764A | G | A | 21 | 21 | B.1.427 | 0.00106 |
noncoding | 29764 | G29764A | G | A | 17 | 17 | AY.25 | 0.000102 |
noncoding | 29764 | G29764A | G | A | 16 | 16 | Q.1 | 0.002021 |
noncoding | 29764 | G29764A | G | A | 15 | 15 | AY.106 | 0.005023 |
noncoding | 29764 | G29764A | G | A | 13 | 13 | B.1.2 | 0.000114 |
noncoding | 29764 | G29764A | G | A | 12 | 12 | AY.33 | 0.000801 |
noncoding | 29764 | G29764A | G | A | 11 | 11 | AY.44 | 0.000067 |
noncoding | 29764 | G29764A | G | A | 10 | 10 | AY.102 | 0.000265 |
noncoding | 29764 | G29764A | G | A | 10 | 10 | AY.5 | 0.000206 |
noncoding | 29764 | G29764A | G | A | 10 | 10 | B.1.525 | 0.001132 |
noncoding | 29764 | G29764A | G | A | 9 | 9 | B.1.526 | 0.000212 |
noncoding | 29764 | G29764A | G | A | 9 | 9 | C.37 | 0.001045 |
noncoding | 29764 | G29764A | G | A | 8 | 8 | B.1.351 | 0.000238 |
noncoding | 29764 | G29764A | G | A | 6 | 6 | AY.3 | 0.00006 |
noncoding | 29764 | G29764A | G | A | 6 | 6 | B.1.177 | 0.000079 |
noncoding | 29764 | G29764A | G | A | 6 | 6 | B.1.621 | 0.000531 |
noncoding | 29764 | G29764A | G | A | 5 | 5 | A.2.5.2 | 0.007862 |
noncoding | 29764 | G29764A | G | A | 5 | 5 | AY.119 | 0.000177 |
noncoding | 29764 | G29764A | G | A | 5 | 5 | AY.3.1 | 0.000426 |
noncoding | 29764 | G29764A | G | A | 5 | 5 | B.1.1.403 | 0.128205 |
noncoding | 29764 | G29764A | G | A | 5 | 5 | B.1.160 | 0.000156 |
noncoding | 29764 | G29764A | G | A | 5 | 5 | Q.4 | 0.002274 |
noncoding | 29764 | G29764A | G | A | 4 | 4 | AY.20 | 0.000155 |
noncoding | 29764 | G29764A | G | A | 4 | 4 | AY.39 | 0.000099 |
noncoding | 29764 | G29764A | G | A | 4 | 4 | B.1.1.28 | 0.001245 |
noncoding | 29764 | G29764A | G | A | 3 | 3 | AY.46 | 0.000312 |
noncoding | 29764 | G29764A | G | A | 3 | 3 | B | 0.000383 |
noncoding | 29764 | G29764A | G | A | 3 | 3 | B.1.1.432 | 0.003797 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | 0.111111 | |
noncoding | 29764 | G29764A | G | A | 2 | 2 | AY.120.1 | 0.000642 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | AY.26 | 0.000057 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | AY.32 | 0.001065 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | AY.4.2.1 | 0.000298 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.1.220 | 0.003717 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.1.222 | 0.000408 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.1.519 | 0.000079 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.128 | 0.001271 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.177.21 | 0.000153 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.240 | 0.000431 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.36 | 0.000292 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.36.38 | 0.003284 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | B.1.561 | 0.000794 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | P.1.1 | 0.000635 |
noncoding | 29764 | G29764A | G | A | 2 | 2 | P.2 | 0.000373 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | A.3 | 0.002096 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.118 | 0.000063 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.12 | 0.000316 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.27 | 0.000065 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.47 | 0.000031 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.6 | 0.000041 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.70 | 0.000209 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.161 | 0.003534 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.205 | 0.003717 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.312 | 0.001912 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.326 | 0.001761 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.448 | 0.002033 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.50 | 0.000679 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.1.507 | 0.008696 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.177.12 | 0.000152 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.177.73 | 0.000566 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.177.83 | 0.001481 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.279 | 0.000514 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.329 | 0.000608 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.36.29 | 0.000517 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.565 | 0.00081 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.570 | 0.002941 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.599 | 0.00365 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.609 | 0.000479 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | B.1.623 | 0.000536 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29764 | G29764A | G | A | 1 | 1 | P.1.16 | 0.000374 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|