CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29763 | A29763- | noncoding | A | - | 15036 | 15036 | 1 | 29763-29763 | |
noncoding | 29763 | A29763G | noncoding | A | G | 618 | 618 | 1 | 29763-29763 | |
noncoding | 29763 | A29763T | noncoding | A | T | 228 | 228 | 1 | 29763-29763 | |
noncoding | 29763 | A29763C | noncoding | A | C | 51 | 51 | 1 | 29763-29763 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29763 | A29763- | A | - | 15036 | 15036 | All | 0.002876 |
noncoding | 29763 | A29763- | A | - | 3715 | 3715 | B.1.525 | 0.420392 |
noncoding | 29763 | A29763- | A | - | 1762 | 1762 | B.1.1.311 | 0.631089 |
noncoding | 29763 | A29763- | A | - | 1541 | 1541 | B.1.1.7 | 0.00138 |
noncoding | 29763 | A29763- | A | - | 1503 | 1503 | AY.4 | 0.002339 |
noncoding | 29763 | A29763- | A | - | 1165 | 1165 | AY.26 | 0.032981 |
noncoding | 29763 | A29763- | A | - | 828 | 828 | AY.38 | 0.41338 |
noncoding | 29763 | A29763G | A | G | 618 | 618 | All | 0.000118 |
noncoding | 29763 | A29763- | A | - | 454 | 454 | B.1.617.2 | 0.001709 |
noncoding | 29763 | A29763- | A | - | 292 | 292 | B.1.2 | 0.002571 |
noncoding | 29763 | A29763- | A | - | 271 | 271 | AY.5 | 0.005596 |
noncoding | 29763 | A29763- | A | - | 241 | 241 | AY.25 | 0.00145 |
noncoding | 29763 | A29763T | A | T | 228 | 228 | All | 0.000044 |
noncoding | 29763 | A29763- | A | - | 206 | 206 | B.1 | 0.001887 |
noncoding | 29763 | A29763- | A | - | 173 | 173 | AY.103 | 0.001074 |
noncoding | 29763 | A29763G | A | G | 134 | 134 | B.1.1.7 | 0.00012 |
noncoding | 29763 | A29763- | A | - | 123 | 123 | P.1 | 0.001938 |
noncoding | 29763 | A29763G | A | G | 121 | 121 | AY.25 | 0.000728 |
noncoding | 29763 | A29763- | A | - | 108 | 108 | B.1.351 | 0.00321 |
noncoding | 29763 | A29763- | A | - | 103 | 103 | AY.43 | 0.000456 |
noncoding | 29763 | A29763- | A | - | 100 | 100 | B.1.1 | 0.001814 |
noncoding | 29763 | A29763- | A | - | 98 | 98 | B.1.221 | 0.006961 |
noncoding | 29763 | A29763- | A | - | 96 | 96 | AY.73 | 0.063872 |
noncoding | 29763 | A29763- | A | - | 90 | 90 | AY.47 | 0.002799 |
noncoding | 29763 | A29763- | A | - | 81 | 81 | B.1.243 | 0.005636 |
noncoding | 29763 | A29763- | A | - | 77 | 77 | B.1.1.50 | 0.052274 |
noncoding | 29763 | A29763- | A | - | 75 | 75 | B.1.177 | 0.000988 |
noncoding | 29763 | A29763- | A | - | 74 | 74 | AY.3 | 0.000736 |
noncoding | 29763 | A29763T | A | T | 74 | 74 | B.1.1.7 | 0.000066 |
noncoding | 29763 | A29763- | A | - | 68 | 68 | B.1.160 | 0.002121 |
noncoding | 29763 | A29763G | A | G | 63 | 63 | C.37 | 0.007312 |
noncoding | 29763 | A29763- | A | - | 59 | 59 | AY.111 | 0.010806 |
noncoding | 29763 | A29763- | A | - | 58 | 58 | B.1.1.519 | 0.002303 |
noncoding | 29763 | A29763C | A | C | 51 | 51 | All | 0.00001 |
noncoding | 29763 | A29763- | A | - | 51 | 51 | AY.44 | 0.00031 |
noncoding | 29763 | A29763- | A | - | 49 | 49 | B.1.526 | 0.001152 |
noncoding | 29763 | A29763- | A | - | 46 | 46 | C.16 | 0.04878 |
noncoding | 29763 | A29763- | A | - | 46 | 46 | C.37 | 0.005339 |
noncoding | 29763 | A29763G | A | G | 43 | 43 | AY.103 | 0.000267 |
noncoding | 29763 | A29763- | A | - | 41 | 41 | AY.39 | 0.001013 |
noncoding | 29763 | A29763G | A | G | 41 | 41 | AY.4 | 0.000064 |
noncoding | 29763 | A29763- | A | - | 36 | 36 | B.1.1.351 | 0.100559 |
noncoding | 29763 | A29763- | A | - | 33 | 33 | B.1.429 | 0.000776 |
noncoding | 29763 | A29763G | A | G | 31 | 31 | B.1.617.2 | 0.000117 |
noncoding | 29763 | A29763G | A | G | 30 | 30 | B.1.621 | 0.002656 |
noncoding | 29763 | A29763- | A | - | 29 | 29 | AY.102 | 0.000769 |
noncoding | 29763 | A29763- | A | - | 27 | 27 | AY.29 | 0.000426 |
noncoding | 29763 | A29763- | A | - | 27 | 27 | B.1.346 | 0.035387 |
noncoding | 29763 | A29763- | A | - | 23 | 23 | B.1.595 | 0.006002 |
noncoding | 29763 | A29763- | A | - | 22 | 22 | B.1.1.368 | 0.067901 |
noncoding | 29763 | A29763- | A | - | 21 | 21 | B.1.305 | 0.045161 |
noncoding | 29763 | A29763- | A | - | 20 | 20 | B.1.258 | 0.001331 |
noncoding | 29763 | A29763- | A | - | 19 | 19 | AY.20 | 0.000738 |
noncoding | 29763 | A29763- | A | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29763 | A29763- | A | - | 19 | 19 | B.1.1.28 | 0.005913 |
noncoding | 29763 | A29763- | A | - | 19 | 19 | B.1.234 | 0.002507 |
noncoding | 29763 | A29763T | A | T | 19 | 19 | B.1.561 | 0.007543 |
noncoding | 29763 | A29763- | A | - | 18 | 18 | AY.42 | 0.000724 |
noncoding | 29763 | A29763- | A | - | 18 | 18 | B.1.1.172 | 0.327273 |
noncoding | 29763 | A29763- | A | - | 18 | 18 | B.1.36.19 | 0.166667 |
noncoding | 29763 | A29763- | A | - | 17 | 17 | AY.5.4 | 0.004704 |
noncoding | 29763 | A29763- | A | - | 17 | 17 | AY.6 | 0.000699 |
noncoding | 29763 | A29763- | A | - | 17 | 17 | B.1.206 | 0.013866 |
noncoding | 29763 | A29763- | A | - | 16 | 16 | AY.46.5 | 0.003175 |
noncoding | 29763 | A29763- | A | - | 16 | 16 | B.1.404 | 0.020833 |
noncoding | 29763 | A29763T | A | T | 16 | 16 | D.2 | 0.001201 |
noncoding | 29763 | A29763- | A | - | 15 | 15 | AY.120 | 0.000558 |
noncoding | 29763 | A29763- | A | - | 15 | 15 | AY.61 | 0.001572 |
noncoding | 29763 | A29763- | A | - | 15 | 15 | AY.75.1 | 0.002705 |
noncoding | 29763 | A29763- | A | - | 15 | 15 | B.1.1.434 | 0.005228 |
noncoding | 29763 | A29763- | A | - | 14 | 14 | AY.100 | 0.000644 |
noncoding | 29763 | A29763T | A | T | 14 | 14 | AY.85 | 0.00598 |
noncoding | 29763 | A29763- | A | - | 14 | 14 | B.1.581 | 0.132075 |
noncoding | 29763 | A29763- | A | - | 13 | 13 | AY.119 | 0.000459 |
noncoding | 29763 | A29763T | A | T | 13 | 13 | AY.29 | 0.000205 |
noncoding | 29763 | A29763- | A | - | 13 | 13 | B.1.1.222 | 0.002652 |
noncoding | 29763 | A29763- | A | - | 13 | 13 | B.1.1.420 | 0.013078 |
noncoding | 29763 | A29763C | A | C | 13 | 13 | B.1.1.7 | 0.000012 |
noncoding | 29763 | A29763T | A | T | 13 | 13 | B.1.177 | 0.000171 |
noncoding | 29763 | A29763- | A | - | 13 | 13 | B.1.621 | 0.001151 |
noncoding | 29763 | A29763G | A | G | 13 | 13 | P.1 | 0.000205 |
noncoding | 29763 | A29763T | A | T | 12 | 12 | AY.4 | 0.000019 |
noncoding | 29763 | A29763- | A | - | 12 | 12 | AY.4.2 | 0.00026 |
noncoding | 29763 | A29763- | A | - | 12 | 12 | AY.9 | 0.000811 |
noncoding | 29763 | A29763- | A | - | 12 | 12 | B.1.1.416 | 0.01086 |
noncoding | 29763 | A29763- | A | - | 12 | 12 | B.1.177.75 | 0.012487 |
noncoding | 29763 | A29763- | A | - | 12 | 12 | B.1.240 | 0.002587 |
noncoding | 29763 | A29763- | A | - | 12 | 12 | B.1.36.29 | 0.006208 |
noncoding | 29763 | A29763- | A | - | 11 | 11 | AY.118 | 0.000689 |
noncoding | 29763 | A29763- | A | - | 11 | 11 | AY.45 | 0.001339 |
noncoding | 29763 | A29763G | A | G | 11 | 11 | B.1.1.112 | 0.647059 |
noncoding | 29763 | A29763- | A | - | 11 | 11 | B.1.1.33 | 0.00463 |
noncoding | 29763 | A29763- | A | - | 11 | 11 | B.1.36 | 0.001605 |
noncoding | 29763 | A29763- | A | - | 10 | 10 | AY.117 | 0.000845 |
noncoding | 29763 | A29763- | A | - | 10 | 10 | AY.74 | 0.001156 |
noncoding | 29763 | A29763- | A | - | 10 | 10 | AY.75 | 0.00056 |
noncoding | 29763 | A29763- | A | - | 10 | 10 | B.1.1.214 | 0.000555 |
noncoding | 29763 | A29763T | A | T | 10 | 10 | B.1.177.35 | 0.006911 |
noncoding | 29763 | A29763- | A | - | 10 | 10 | B.1.596 | 0.000871 |
noncoding | 29763 | A29763T | A | T | 10 | 10 | B.1.617.2 | 0.000038 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | B.1.1.317 | 0.003705 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | B.1.1.318 | 0.002716 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | B.1.160.14 | 0.019068 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | B.1.177.86 | 0.001651 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | B.1.258.3 | 0.015075 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | B.1.427 | 0.000454 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | B.1.599 | 0.032847 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | D.2 | 0.000675 |
noncoding | 29763 | A29763- | A | - | 9 | 9 | P.1.14 | 0.00043 |
noncoding | 29763 | A29763- | A | - | 8 | 8 | AY.23 | 0.000558 |
noncoding | 29763 | A29763- | A | - | 8 | 8 | AY.9.2 | 0.000294 |
noncoding | 29763 | A29763- | A | - | 8 | 8 | AY.98.1 | 0.000387 |
noncoding | 29763 | A29763- | A | - | 8 | 8 | B.1.1.1 | 0.002614 |
noncoding | 29763 | A29763- | A | - | 8 | 8 | B.1.1.303 | 0.022099 |
noncoding | 29763 | A29763- | A | - | 8 | 8 | B.1.575 | 0.002427 |
noncoding | 29763 | A29763- | A | - | 8 | 8 | B.1.623 | 0.004292 |
noncoding | 29763 | A29763- | A | - | 7 | 7 | AY.114 | 0.001618 |
noncoding | 29763 | A29763- | A | - | 7 | 7 | AY.46 | 0.000729 |
noncoding | 29763 | A29763- | A | - | 7 | 7 | AY.85 | 0.00299 |
noncoding | 29763 | A29763- | A | - | 7 | 7 | B.1.177.7 | 0.001154 |
noncoding | 29763 | A29763- | A | - | 7 | 7 | B.1.36.22 | 0.008454 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | AY.14 | 0.000528 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | AY.34 | 0.000582 |
noncoding | 29763 | A29763G | A | G | 6 | 6 | AY.4.2 | 0.00013 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | AY.46.4 | 0.000987 |
noncoding | 29763 | A29763G | A | G | 6 | 6 | AY.47 | 0.000187 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | AY.54 | 0.000572 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B | 0.000767 |
noncoding | 29763 | A29763G | A | G | 6 | 6 | B.1.1.222 | 0.001224 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.1.316 | 0.00555 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.1.526 | 0.021277 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.110.3 | 0.00431 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.177.6 | 0.005859 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.177.82 | 0.002864 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.241 | 0.00487 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.258.17 | 0.000624 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.311 | 0.001647 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | B.1.36.31 | 0.010508 |
noncoding | 29763 | A29763C | A | C | 6 | 6 | P.1 | 0.000095 |
noncoding | 29763 | A29763- | A | - | 6 | 6 | P.1.16 | 0.002245 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | A | 0.001935 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | A.2.5 | 0.002495 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | AY.113 | 0.000712 |
noncoding | 29763 | A29763G | A | G | 5 | 5 | AY.26 | 0.000142 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | AY.30 | 0.001979 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | AY.35 | 0.001165 |
noncoding | 29763 | A29763G | A | G | 5 | 5 | AY.44 | 0.00003 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | AY.98 | 0.000395 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | B.1.1.231 | 0.01548 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | B.1.1.37 | 0.000964 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | B.1.160.33 | 0.022124 |
noncoding | 29763 | A29763C | A | C | 5 | 5 | B.1.2 | 0.000044 |
noncoding | 29763 | A29763G | A | G | 5 | 5 | B.1.526 | 0.000118 |
noncoding | 29763 | A29763- | A | - | 5 | 5 | B.1.582 | 0.002453 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | AY.12 | 0.001264 |
noncoding | 29763 | A29763G | A | G | 4 | 4 | AY.29 | 0.000063 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | AY.59 | 0.002119 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | AY.65 | 0.002132 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | AY.69 | 0.000747 |
noncoding | 29763 | A29763G | A | G | 4 | 4 | AY.74 | 0.000463 |
noncoding | 29763 | A29763G | A | G | 4 | 4 | B.1 | 0.000037 |
noncoding | 29763 | A29763G | A | G | 4 | 4 | B.1.1 | 0.000073 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.1.129 | 0.036697 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.1.298 | 0.003448 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.1.306 | 0.001754 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.1.312 | 0.007648 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.1.46 | 0.017467 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.1.464 | 0.005891 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.104 | 0.01476 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.177.32 | 0.005398 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.177.76 | 0.009975 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.214.2 | 0.002398 |
noncoding | 29763 | A29763T | A | T | 4 | 4 | B.1.351 | 0.000119 |
noncoding | 29763 | A29763G | A | G | 4 | 4 | B.1.525 | 0.000453 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | B.1.609 | 0.001918 |
noncoding | 29763 | A29763G | A | G | 4 | 4 | B.1.637 | 0.000292 |
noncoding | 29763 | A29763- | A | - | 4 | 4 | R.1 | 0.00036 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AU.1 | 0.003797 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.105 | 0.001929 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29763 | A29763G | A | G | 3 | 3 | AY.118 | 0.000188 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.13 | 0.000483 |
noncoding | 29763 | A29763T | A | T | 3 | 3 | AY.14 | 0.000264 |
noncoding | 29763 | A29763C | A | C | 3 | 3 | AY.20 | 0.000117 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.24 | 0.001293 |
noncoding | 29763 | A29763T | A | T | 3 | 3 | AY.25 | 0.000018 |
noncoding | 29763 | A29763C | A | C | 3 | 3 | AY.29 | 0.000047 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.40 | 0.002893 |
noncoding | 29763 | A29763G | A | G | 3 | 3 | AY.43 | 0.000013 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.46.6 | 0.000217 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.62 | 0.001307 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.7 | 0.000588 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.70 | 0.000626 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.84 | 0.001312 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | AY.99.2 | 0.000276 |
noncoding | 29763 | A29763C | A | C | 3 | 3 | B.1 | 0.000027 |
noncoding | 29763 | A29763T | A | T | 3 | 3 | B.1 | 0.000027 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.1.170 | 0.003741 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.1.192 | 0.006928 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.1.236 | 0.02069 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.1.428 | 0.028302 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.1.432 | 0.003797 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.1.528 | 0.014423 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.145 | 0.157895 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.177.21 | 0.000229 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.177.57 | 0.000843 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.210 | 0.006397 |
noncoding | 29763 | A29763G | A | G | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29763 | A29763T | A | T | 3 | 3 | B.1.243 | 0.000209 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.258.16 | 0.00491 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.36.16 | 0.004274 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.400 | 0.001287 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.416.1 | 0.004687 |
noncoding | 29763 | A29763G | A | G | 3 | 3 | B.1.429 | 0.000071 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.44 | 0.025 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.590 | 0.013636 |
noncoding | 29763 | A29763G | A | G | 3 | 3 | B.1.612 | 0.007958 |
noncoding | 29763 | A29763C | A | C | 3 | 3 | B.1.617.2 | 0.000011 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.637 | 0.000219 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.9.4 | 0.018405 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | B.1.91 | 0.006224 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | N.5 | 0.0053 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | P.1.15 | 0.000697 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | P.2 | 0.00056 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | Q.1 | 0.000379 |
noncoding | 29763 | A29763- | A | - | 3 | 3 | Q.3 | 0.000435 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.106 | 0.00067 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.110 | 0.000225 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.116 | 0.000574 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.19 | 0.002281 |
noncoding | 29763 | A29763T | A | T | 2 | 2 | AY.23 | 0.000139 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | AY.24 | 0.000862 |
noncoding | 29763 | A29763C | A | C | 2 | 2 | AY.25 | 0.000012 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.33 | 0.000134 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.36 | 0.000296 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | AY.39 | 0.000049 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.39.1 | 0.000079 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | AY.4.4 | 0.000818 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.46.3 | 0.001867 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.52 | 0.001629 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.56 | 0.00321 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | AY.75 | 0.000112 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AY.95 | 0.001522 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | AY.99 | 0.002099 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AZ.2 | 0.001642 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | AZ.4 | 0.006711 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.174 | 0.006757 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | B.1.1.232 | 0.00363 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.232 | 0.00363 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.279 | 0.002242 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.294 | 0.002532 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.354 | 0.008772 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.385 | 0.008929 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.1.39 | 0.001019 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.177.60 | 0.000437 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.177.65 | 0.001331 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.177.77 | 0.001452 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | B.1.192 | 0.018519 |
noncoding | 29763 | A29763T | A | T | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.298 | 0.004228 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | B.1.351 | 0.000059 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.351.3 | 0.001753 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.36.17 | 0.000988 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.396 | 0.001411 |
noncoding | 29763 | A29763T | A | T | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.436 | 0.002058 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.441 | 0.019231 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.564.1 | 0.003155 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.565 | 0.001621 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.588 | 0.00182 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.1.617.1 | 0.000258 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.31 | 0.007463 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.39 | 0.004662 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | B.40 | 0.000729 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | C.3 | 0.015267 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | C.35 | 0.001548 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | C.36.3 | 0.001134 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | C.38 | 0.016129 |
noncoding | 29763 | A29763G | A | G | 2 | 2 | D.2 | 0.00015 |
noncoding | 29763 | A29763C | A | C | 2 | 2 | D.2 | 0.00015 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | P.1.12 | 0.000968 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | P.1.13 | 0.001797 |
noncoding | 29763 | A29763- | A | - | 2 | 2 | P.1.17 | 0.000324 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | A.1 | 0.000282 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | A.9 | 0.045455 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AK.2 | 0.045455 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.10 | 0.00053 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.103 | 0.000006 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.114 | 0.000231 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.22 | 0.002092 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.27 | 0.000065 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | AY.3 | 0.00001 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.4.3 | 0.000842 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.47 | 0.000031 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.48 | 0.000465 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.48 | 0.000465 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.51 | 0.000909 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.53 | 0.000288 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.58 | 0.000907 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.67 | 0.000464 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.70 | 0.000209 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.84 | 0.000437 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B | 0.000128 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B | 0.000128 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.154 | 0.04 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.161 | 0.003534 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.166 | 0.033333 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.196 | 0.005714 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.229 | 0.005747 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.265 | 0.003155 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.274 | 0.005051 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.1.279 | 0.001121 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.1.284 | 0.000107 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.286 | 0.002899 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.1.333 | 0.001076 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.353 | 0.020833 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | B.1.1.376 | 0.005952 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.433 | 0.001425 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.1.46 | 0.004367 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.47 | 0.005348 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.517 | 0.006803 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.523 | 0.001563 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.53 | 0.013699 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.57 | 0.011494 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.63 | 0.000386 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.1.75 | 0.010638 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.110 | 0.004525 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.12 | 0.008 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.160.26 | 0.002421 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.160.27 | 0.015152 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.160.32 | 0.004292 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.169 | 0.014925 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.177.4 | 0.000211 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.177.44 | 0.000519 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.177.54 | 0.000606 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.177.55 | 0.002331 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.177.85 | 0.005435 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.177.87 | 0.000728 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.177.87 | 0.000728 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.178 | 0.02381 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.180 | 0.05 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.192 | 0.009259 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.258.24 | 0.010753 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.291 | 0.019231 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.329 | 0.000608 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.36.26 | 0.002857 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.361 | 0.001289 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.408 | 0.00369 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.413 | 0.004255 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.420 | 0.010417 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.429.1 | 0.012048 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.446 | 0.02 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | B.1.506 | 0.02381 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.509 | 0.000866 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 29763 | A29763C | A | C | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.567 | 0.003333 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.568 | 0.001111 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.595.1 | 0.005848 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.600 | 0.005848 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | B.1.618 | 0.004032 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.619.1 | 0.000641 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.627 | 0.00202 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.628 | 0.000352 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.81 | 0.021277 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.1.9.5 | 0.005682 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.27 | 0.015385 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.3.1 | 0.001658 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.4.5 | 0.011905 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.55 | 0.00295 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | B.58 | 0.010204 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | C.1 | 0.002392 |
noncoding | 29763 | A29763G | A | G | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | L.3 | 0.003546 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | P.1 | 0.000016 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | P.1.4 | 0.000977 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | P.1.7 | 0.000319 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | P.1.8 | 0.004785 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | P.2 | 0.000187 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | P.3 | 0.001595 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | P.6 | 0.003145 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | Q.8 | 0.000165 |
noncoding | 29763 | A29763T | A | T | 1 | 1 | R.1 | 0.00009 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | U.3 | 0.003861 |
noncoding | 29763 | A29763- | A | - | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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