CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29755 | G29755T | noncoding | G | T | 4436 | 4436 | 1 | 29755-29755 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29755 | G29755T | G | T | 4436 | 4436 | All | 0.000848 |
noncoding | 29755 | G29755T | G | T | 1978 | 1978 | B.1.497 | 0.6226 |
noncoding | 29755 | G29755T | G | T | 753 | 753 | B.1.1.7 | 0.000674 |
noncoding | 29755 | G29755T | G | T | 114 | 114 | P.1 | 0.001796 |
noncoding | 29755 | G29755T | G | T | 95 | 95 | B.1.2 | 0.000837 |
noncoding | 29755 | G29755T | G | T | 87 | 87 | B.1.126 | 0.110969 |
noncoding | 29755 | G29755T | G | T | 80 | 80 | AY.4 | 0.000125 |
noncoding | 29755 | G29755T | G | T | 79 | 79 | B.1.526 | 0.001857 |
noncoding | 29755 | G29755T | G | T | 76 | 76 | AY.103 | 0.000472 |
noncoding | 29755 | G29755T | G | T | 75 | 75 | B.1.617.2 | 0.000282 |
noncoding | 29755 | G29755T | G | T | 58 | 58 | AY.44 | 0.000353 |
noncoding | 29755 | G29755T | G | T | 58 | 58 | B.1.258.24 | 0.623656 |
noncoding | 29755 | G29755T | G | T | 55 | 55 | B.1.177 | 0.000724 |
noncoding | 29755 | G29755T | G | T | 53 | 53 | B.1.258 | 0.003527 |
noncoding | 29755 | G29755T | G | T | 48 | 48 | B.1 | 0.00044 |
noncoding | 29755 | G29755T | G | T | 47 | 47 | AY.42 | 0.001891 |
noncoding | 29755 | G29755T | G | T | 41 | 41 | B.1.177.16 | 0.027243 |
noncoding | 29755 | G29755T | G | T | 38 | 38 | B.1.1.1 | 0.012414 |
noncoding | 29755 | G29755T | G | T | 30 | 30 | B.1.1 | 0.000544 |
noncoding | 29755 | G29755T | G | T | 30 | 30 | B.1.1.519 | 0.001191 |
noncoding | 29755 | G29755T | G | T | 28 | 28 | C.36.2 | 0.965517 |
noncoding | 29755 | G29755T | G | T | 27 | 27 | AY.43 | 0.00012 |
noncoding | 29755 | G29755T | G | T | 26 | 26 | B.1.596 | 0.002266 |
noncoding | 29755 | G29755T | G | T | 22 | 22 | B.1.243 | 0.001531 |
noncoding | 29755 | G29755T | G | T | 15 | 15 | AY.25 | 0.00009 |
noncoding | 29755 | G29755T | G | T | 15 | 15 | AY.71 | 0.007126 |
noncoding | 29755 | G29755T | G | T | 15 | 15 | B.1.36 | 0.002189 |
noncoding | 29755 | G29755T | G | T | 14 | 14 | AY.102 | 0.000371 |
noncoding | 29755 | G29755T | G | T | 14 | 14 | B.1.177.82 | 0.006683 |
noncoding | 29755 | G29755T | G | T | 14 | 14 | B.1.351 | 0.000416 |
noncoding | 29755 | G29755T | G | T | 13 | 13 | AY.113 | 0.001851 |
noncoding | 29755 | G29755T | G | T | 13 | 13 | P.2 | 0.002426 |
noncoding | 29755 | G29755T | G | T | 12 | 12 | B.1.429 | 0.000282 |
noncoding | 29755 | G29755T | G | T | 11 | 11 | B.1.160 | 0.000343 |
noncoding | 29755 | G29755T | G | T | 11 | 11 | B.1.177.56 | 0.007343 |
noncoding | 29755 | G29755T | G | T | 11 | 11 | B.1.404 | 0.014323 |
noncoding | 29755 | G29755T | G | T | 11 | 11 | B.1.427 | 0.000555 |
noncoding | 29755 | G29755T | G | T | 11 | 11 | P.1.14 | 0.000526 |
noncoding | 29755 | G29755T | G | T | 10 | 10 | AY.65 | 0.00533 |
noncoding | 29755 | G29755T | G | T | 10 | 10 | B.1.384 | 1 |
noncoding | 29755 | G29755T | G | T | 9 | 9 | B.1.627 | 0.018182 |
noncoding | 29755 | G29755T | G | T | 8 | 8 | B.1.564 | 0.003407 |
noncoding | 29755 | G29755T | G | T | 7 | 7 | AY.99.2 | 0.000645 |
noncoding | 29755 | G29755T | G | T | 7 | 7 | B.1.258.17 | 0.000728 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | AY.39 | 0.000148 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | B.1.1.222 | 0.001224 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | B.1.1.224 | 0.085714 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | B.1.1.28 | 0.001867 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | B.1.1.33 | 0.002525 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | B.1.525 | 0.000679 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | B.1.637 | 0.000438 |
noncoding | 29755 | G29755T | G | T | 6 | 6 | P.6 | 0.018868 |
noncoding | 29755 | G29755T | G | T | 5 | 5 | AY.121 | 0.000677 |
noncoding | 29755 | G29755T | G | T | 5 | 5 | B.1.236 | 0.010267 |
noncoding | 29755 | G29755T | G | T | 5 | 5 | P.1.7 | 0.001596 |
noncoding | 29755 | G29755T | G | T | 5 | 5 | R.1 | 0.00045 |
noncoding | 29755 | G29755T | G | T | 4 | 4 | AY.26 | 0.000113 |
noncoding | 29755 | G29755T | G | T | 4 | 4 | AY.74 | 0.000463 |
noncoding | 29755 | G29755T | G | T | 4 | 4 | B.1.1.318 | 0.001207 |
noncoding | 29755 | G29755T | G | T | 4 | 4 | B.1.426 | 0.004036 |
noncoding | 29755 | G29755T | G | T | 4 | 4 | B.1.621 | 0.000354 |
noncoding | 29755 | G29755T | G | T | 4 | 4 | D.2 | 0.0003 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | A | 0.001161 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | AY.118 | 0.000188 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | AY.120 | 0.000112 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | AY.3 | 0.00003 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | AY.47 | 0.000093 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | AY.5 | 0.000062 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | AY.57 | 0.001969 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | AY.78 | 0.004622 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B | 0.000383 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.1.214 | 0.000166 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.1.317 | 0.001235 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.1.526 | 0.010638 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.199 | 0.012397 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.241 | 0.002435 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.36.27 | 0.00229 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.36.29 | 0.001552 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.36.8 | 0.003 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.432 | 0.033708 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.459 | 0.012245 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.628 | 0.001057 |
noncoding | 29755 | G29755T | G | T | 3 | 3 | B.1.634 | 0.010274 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | A.29 | 0.010638 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | A.6 | 0.010256 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AD.2 | 0.000438 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.16.1 | 0.00094 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.29 | 0.000032 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.5.4 | 0.000553 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.61 | 0.00021 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.75.1 | 0.000361 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.9 | 0.000135 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.9.1 | 0.000167 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | AY.91 | 0.001461 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.1.326 | 0.003521 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.177.81 | 0.000379 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.234 | 0.000264 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.258.14 | 0.001961 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.258.3 | 0.00335 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.3 | 0.005236 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.36.9 | 0.006431 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.396 | 0.001411 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.409 | 0.001563 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.597 | 0.009259 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.620 | 0.001892 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | B.1.623 | 0.001073 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | C.18 | 0.005181 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | P.1.1 | 0.000635 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | P.1.12 | 0.000968 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | P.3 | 0.00319 |
noncoding | 29755 | G29755T | G | T | 2 | 2 | Q.1 | 0.000253 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | A.1 | 0.000282 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.119 | 0.000035 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.27 | 0.000065 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.36 | 0.000148 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.4.3 | 0.000842 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.46 | 0.000104 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.76 | 0.004831 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.79 | 0.001211 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.9.2.1 | 0.001976 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | AY.99 | 0.001049 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.181 | 0.004545 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.231 | 0.003096 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.27 | 0.00565 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.279 | 0.001121 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.284 | 0.000107 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.294 | 0.001266 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.304 | 0.002809 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.312 | 0.001912 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.375 | 0.011905 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.416 | 0.000905 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.45 | 0.014085 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.46 | 0.004367 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.50 | 0.000679 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.63 | 0.000386 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.1.72 | 0.030303 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.160.20 | 0.008929 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.177.19 | 0.001431 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.177.52 | 0.001757 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.177.84 | 0.006667 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.189 | 0.004292 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.221.1 | 0.002907 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.221.2 | 0.004016 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.232 | 0.000537 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.239 | 0.001221 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.260 | 0.003344 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.308 | 0.034483 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.336 | 0.002439 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.351.5 | 0.0006 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.36.17 | 0.000494 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.36.34 | 0.021277 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.362 | 0.001541 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.456 | 0.003268 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.462 | 0.007246 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.465 | 0.003802 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.516 | 0.001957 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.523 | 0.002451 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.588 | 0.00091 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.609 | 0.000479 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.619.1 | 0.000641 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.1.621.1 | 0.000506 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.23 | 0.002924 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | B.4.1 | 0.018868 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | C.17 | 0.055556 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | C.35 | 0.000774 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | C.36 | 0.000911 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | C.38 | 0.008065 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | N.5 | 0.001767 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | P.1.10.1 | 0.00813 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | Q.3 | 0.000145 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | Q.4 | 0.000455 |
noncoding | 29755 | G29755T | G | T | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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