CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29755 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29755G29755TnoncodingGT44364436129755-29755

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29755G29755TGT44364436All0.000848
noncoding29755G29755TGT19781978B.1.4970.6226
noncoding29755G29755TGT753753B.1.1.70.000674
noncoding29755G29755TGT114114P.10.001796
noncoding29755G29755TGT9595B.1.20.000837
noncoding29755G29755TGT8787B.1.1260.110969
noncoding29755G29755TGT8080AY.40.000125
noncoding29755G29755TGT7979B.1.5260.001857
noncoding29755G29755TGT7676AY.1030.000472
noncoding29755G29755TGT7575B.1.617.20.000282
noncoding29755G29755TGT5858AY.440.000353
noncoding29755G29755TGT5858B.1.258.240.623656
noncoding29755G29755TGT5555B.1.1770.000724
noncoding29755G29755TGT5353B.1.2580.003527
noncoding29755G29755TGT4848B.10.00044
noncoding29755G29755TGT4747AY.420.001891
noncoding29755G29755TGT4141B.1.177.160.027243
noncoding29755G29755TGT3838B.1.1.10.012414
noncoding29755G29755TGT3030B.1.10.000544
noncoding29755G29755TGT3030B.1.1.5190.001191
noncoding29755G29755TGT2828C.36.20.965517
noncoding29755G29755TGT2727AY.430.00012
noncoding29755G29755TGT2626B.1.5960.002266
noncoding29755G29755TGT2222B.1.2430.001531
noncoding29755G29755TGT1515AY.250.00009
noncoding29755G29755TGT1515AY.710.007126
noncoding29755G29755TGT1515B.1.360.002189
noncoding29755G29755TGT1414AY.1020.000371
noncoding29755G29755TGT1414B.1.177.820.006683
noncoding29755G29755TGT1414B.1.3510.000416
noncoding29755G29755TGT1313AY.1130.001851
noncoding29755G29755TGT1313P.20.002426
noncoding29755G29755TGT1212B.1.4290.000282
noncoding29755G29755TGT1111B.1.1600.000343
noncoding29755G29755TGT1111B.1.177.560.007343
noncoding29755G29755TGT1111B.1.4040.014323
noncoding29755G29755TGT1111B.1.4270.000555
noncoding29755G29755TGT1111P.1.140.000526
noncoding29755G29755TGT1010AY.650.00533
noncoding29755G29755TGT1010B.1.3841
noncoding29755G29755TGT99B.1.6270.018182
noncoding29755G29755TGT88B.1.5640.003407
noncoding29755G29755TGT77AY.99.20.000645
noncoding29755G29755TGT77B.1.258.170.000728
noncoding29755G29755TGT66AY.390.000148
noncoding29755G29755TGT66B.1.1.2220.001224
noncoding29755G29755TGT66B.1.1.2240.085714
noncoding29755G29755TGT66B.1.1.280.001867
noncoding29755G29755TGT66B.1.1.330.002525
noncoding29755G29755TGT66B.1.5250.000679
noncoding29755G29755TGT66B.1.6370.000438
noncoding29755G29755TGT66P.60.018868
noncoding29755G29755TGT55AY.1210.000677
noncoding29755G29755TGT55B.1.2360.010267
noncoding29755G29755TGT55P.1.70.001596
noncoding29755G29755TGT55R.10.00045
noncoding29755G29755TGT44AY.260.000113
noncoding29755G29755TGT44AY.740.000463
noncoding29755G29755TGT44B.1.1.3180.001207
noncoding29755G29755TGT44B.1.4260.004036
noncoding29755G29755TGT44B.1.6210.000354
noncoding29755G29755TGT44D.20.0003
noncoding29755G29755TGT33A0.001161
noncoding29755G29755TGT33AY.1180.000188
noncoding29755G29755TGT33AY.1200.000112
noncoding29755G29755TGT33AY.30.00003
noncoding29755G29755TGT33AY.470.000093
noncoding29755G29755TGT33AY.50.000062
noncoding29755G29755TGT33AY.570.001969
noncoding29755G29755TGT33AY.780.004622
noncoding29755G29755TGT33B0.000383
noncoding29755G29755TGT33B.1.1.2140.000166
noncoding29755G29755TGT33B.1.1.3170.001235
noncoding29755G29755TGT33B.1.1.5260.010638
noncoding29755G29755TGT33B.1.1990.012397
noncoding29755G29755TGT33B.1.2410.002435
noncoding29755G29755TGT33B.1.36.270.00229
noncoding29755G29755TGT33B.1.36.290.001552
noncoding29755G29755TGT33B.1.36.80.003
noncoding29755G29755TGT33B.1.4320.033708
noncoding29755G29755TGT33B.1.4590.012245
noncoding29755G29755TGT33B.1.6280.001057
noncoding29755G29755TGT33B.1.6340.010274
noncoding29755G29755TGT22A.290.010638
noncoding29755G29755TGT22A.60.010256
noncoding29755G29755TGT22AD.20.000438
noncoding29755G29755TGT22AY.1000.000092
noncoding29755G29755TGT22AY.160.000759
noncoding29755G29755TGT22AY.16.10.00094
noncoding29755G29755TGT22AY.200.000078
noncoding29755G29755TGT22AY.290.000032
noncoding29755G29755TGT22AY.5.40.000553
noncoding29755G29755TGT22AY.610.00021
noncoding29755G29755TGT22AY.75.10.000361
noncoding29755G29755TGT22AY.90.000135
noncoding29755G29755TGT22AY.9.10.000167
noncoding29755G29755TGT22AY.910.001461
noncoding29755G29755TGT22B.1.1.3260.003521
noncoding29755G29755TGT22B.1.177.810.000379
noncoding29755G29755TGT22B.1.2210.000142
noncoding29755G29755TGT22B.1.2340.000264
noncoding29755G29755TGT22B.1.258.140.001961
noncoding29755G29755TGT22B.1.258.30.00335
noncoding29755G29755TGT22B.1.30.005236
noncoding29755G29755TGT22B.1.36.90.006431
noncoding29755G29755TGT22B.1.3960.001411
noncoding29755G29755TGT22B.1.4090.001563
noncoding29755G29755TGT22B.1.5970.009259
noncoding29755G29755TGT22B.1.6200.001892
noncoding29755G29755TGT22B.1.6230.001073
noncoding29755G29755TGT22C.180.005181
noncoding29755G29755TGT22P.1.10.000635
noncoding29755G29755TGT22P.1.120.000968
noncoding29755G29755TGT22P.30.00319
noncoding29755G29755TGT22Q.10.000253
noncoding29755G29755TGT11A.10.000282
noncoding29755G29755TGT11AY.1060.000335
noncoding29755G29755TGT11AY.1190.000035
noncoding29755G29755TGT11AY.270.000065
noncoding29755G29755TGT11AY.340.000097
noncoding29755G29755TGT11AY.360.000148
noncoding29755G29755TGT11AY.4.30.000842
noncoding29755G29755TGT11AY.4.50.000107
noncoding29755G29755TGT11AY.460.000104
noncoding29755G29755TGT11AY.750.000056
noncoding29755G29755TGT11AY.760.004831
noncoding29755G29755TGT11AY.790.001211
noncoding29755G29755TGT11AY.9.2.10.001976
noncoding29755G29755TGT11AY.980.000079
noncoding29755G29755TGT11AY.98.10.000048
noncoding29755G29755TGT11AY.990.001049
noncoding29755G29755TGT11B.1.1.1740.003378
noncoding29755G29755TGT11B.1.1.1810.004545
noncoding29755G29755TGT11B.1.1.2310.003096
noncoding29755G29755TGT11B.1.1.270.00565
noncoding29755G29755TGT11B.1.1.2770.000759
noncoding29755G29755TGT11B.1.1.2790.001121
noncoding29755G29755TGT11B.1.1.2840.000107
noncoding29755G29755TGT11B.1.1.2940.001266
noncoding29755G29755TGT11B.1.1.3040.002809
noncoding29755G29755TGT11B.1.1.3060.000438
noncoding29755G29755TGT11B.1.1.3120.001912
noncoding29755G29755TGT11B.1.1.3750.011905
noncoding29755G29755TGT11B.1.1.4160.000905
noncoding29755G29755TGT11B.1.1.4320.001266
noncoding29755G29755TGT11B.1.1.450.014085
noncoding29755G29755TGT11B.1.1.460.004367
noncoding29755G29755TGT11B.1.1.500.000679
noncoding29755G29755TGT11B.1.1.630.000386
noncoding29755G29755TGT11B.1.1.700.000341
noncoding29755G29755TGT11B.1.1.720.030303
noncoding29755G29755TGT11B.1.160.200.008929
noncoding29755G29755TGT11B.1.177.190.001431
noncoding29755G29755TGT11B.1.177.210.000076
noncoding29755G29755TGT11B.1.177.330.001645
noncoding29755G29755TGT11B.1.177.350.000691
noncoding29755G29755TGT11B.1.177.520.001757
noncoding29755G29755TGT11B.1.177.630.002703
noncoding29755G29755TGT11B.1.177.840.006667
noncoding29755G29755TGT11B.1.1890.004292
noncoding29755G29755TGT11B.1.2100.002132
noncoding29755G29755TGT11B.1.221.10.002907
noncoding29755G29755TGT11B.1.221.20.004016
noncoding29755G29755TGT11B.1.2220.001692
noncoding29755G29755TGT11B.1.2320.000537
noncoding29755G29755TGT11B.1.2390.001221
noncoding29755G29755TGT11B.1.2600.003344
noncoding29755G29755TGT11B.1.3080.034483
noncoding29755G29755TGT11B.1.3110.000275
noncoding29755G29755TGT11B.1.3360.002439
noncoding29755G29755TGT11B.1.351.50.0006
noncoding29755G29755TGT11B.1.36.10.00114
noncoding29755G29755TGT11B.1.36.170.000494
noncoding29755G29755TGT11B.1.36.340.021277
noncoding29755G29755TGT11B.1.3620.001541
noncoding29755G29755TGT11B.1.438.10.000107
noncoding29755G29755TGT11B.1.4560.003268
noncoding29755G29755TGT11B.1.4620.007246
noncoding29755G29755TGT11B.1.4650.003802
noncoding29755G29755TGT11B.1.5160.001957
noncoding29755G29755TGT11B.1.5230.002451
noncoding29755G29755TGT11B.1.5610.000397
noncoding29755G29755TGT11B.1.5750.000303
noncoding29755G29755TGT11B.1.5820.000491
noncoding29755G29755TGT11B.1.5880.00091
noncoding29755G29755TGT11B.1.5950.000261
noncoding29755G29755TGT11B.1.6090.000479
noncoding29755G29755TGT11B.1.6190.000871
noncoding29755G29755TGT11B.1.619.10.000641
noncoding29755G29755TGT11B.1.621.10.000506
noncoding29755G29755TGT11B.230.002924
noncoding29755G29755TGT11B.4.10.018868
noncoding29755G29755TGT11C.170.055556
noncoding29755G29755TGT11C.350.000774
noncoding29755G29755TGT11C.360.000911
noncoding29755G29755TGT11C.380.008065
noncoding29755G29755TGT11N.50.001767
noncoding29755G29755TGT11P.1.10.10.00813
noncoding29755G29755TGT11P.1.150.000232
noncoding29755G29755TGT11P.1.170.000162
noncoding29755G29755TGT11Q.30.000145
noncoding29755G29755TGT11Q.40.000455
noncoding29755G29755TGT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.