CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29745

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29745	G29745-		noncoding	G	-	34317	34317	1	29745-29745
noncoding	29745	G29745T		noncoding	G	T	7833	7833	1	29745-29745
noncoding	29745	G29745A		noncoding	G	A	877	877	1	29745-29745
noncoding	29745	G29745C		noncoding	G	C	140	140	1	29745-29745
noncoding	29745	G29745V		noncoding	G	V	1	1	1	29745-29745

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29745	G29745-	G	-	34317	34317	All	0.006564
noncoding	29745	G29745-	G	-	9395	9395	B.1.526	0.220825
noncoding	29745	G29745T	G	T	7833	7833	All	0.001498
noncoding	29745	G29745-	G	-	5417	5417	B.1.1.7	0.004849
noncoding	29745	G29745-	G	-	3716	3716	B.1.525	0.420505
noncoding	29745	G29745T	G	T	2657	2657	R.1	0.239154
noncoding	29745	G29745-	G	-	1958	1958	AY.4	0.003047
noncoding	29745	G29745-	G	-	1762	1762	B.1.1.311	0.631089
noncoding	29745	G29745T	G	T	1511	1511	B.1.497	0.475606
noncoding	29745	G29745A	G	A	877	877	All	0.000168
noncoding	29745	G29745-	G	-	831	831	AY.38	0.414878
noncoding	29745	G29745T	G	T	704	704	B.1.1.7	0.00063
noncoding	29745	G29745-	G	-	533	533	B.1.617.2	0.002007
noncoding	29745	G29745-	G	-	530	530	B.1.429	0.01247
noncoding	29745	G29745-	G	-	439	439	B.1.2	0.003866
noncoding	29745	G29745-	G	-	407	407	B.1.279	0.20904
noncoding	29745	G29745-	G	-	400	400	B.1	0.003664
noncoding	29745	G29745-	G	-	395	395	B.1.177	0.005201
noncoding	29745	G29745-	G	-	370	370	B.1.177.81	0.070049
noncoding	29745	G29745-	G	-	365	365	B.1.351.2	0.110439
noncoding	29745	G29745-	G	-	309	309	P.1	0.004868
noncoding	29745	G29745-	G	-	305	305	AY.39	0.007537
noncoding	29745	G29745A	G	A	290	290	Z.1	0.83815
noncoding	29745	G29745-	G	-	288	288	AY.5	0.005947
noncoding	29745	G29745-	G	-	286	286	AY.25	0.00172
noncoding	29745	G29745-	G	-	286	286	B.1.258.11	0.113357
noncoding	29745	G29745T	G	T	285	285	AY.4	0.000444
noncoding	29745	G29745T	G	T	281	281	B.1.2	0.002474
noncoding	29745	G29745T	G	T	239	239	B.1.1.171	0.878676
noncoding	29745	G29745-	G	-	227	227	B.1.1	0.004118
noncoding	29745	G29745-	G	-	216	216	B.1.221	0.015343
noncoding	29745	G29745-	G	-	201	201	B.1.160	0.006269
noncoding	29745	G29745-	G	-	187	187	AY.103	0.001161
noncoding	29745	G29745-	G	-	186	186	B.1.1.519	0.007386
noncoding	29745	G29745-	G	-	176	176	B.1.351	0.005232
noncoding	29745	G29745-	G	-	163	163	B.1.626	0.931429
noncoding	29745	G29745-	G	-	160	160	AY.43	0.000709
noncoding	29745	G29745T	G	T	156	156	K.3	0.962963
noncoding	29745	G29745-	G	-	149	149	B.1.621	0.013189
noncoding	29745	G29745-	G	-	145	145	AY.46.6	0.01047
noncoding	29745	G29745-	G	-	145	145	D.5	0.721393
noncoding	29745	G29745T	G	T	144	144	B.1.1	0.002612
noncoding	29745	G29745-	G	-	143	143	B.1.427	0.007221
noncoding	29745	G29745C	G	C	140	140	All	0.000027
noncoding	29745	G29745-	G	-	133	133	B.1.258	0.008851
noncoding	29745	G29745T	G	T	121	121	B.1.617.2	0.000456
noncoding	29745	G29745-	G	-	115	115	AY.120	0.004276
noncoding	29745	G29745-	G	-	112	112	AY.44	0.000682
noncoding	29745	G29745A	G	A	106	106	B.1.1.7	0.000095
noncoding	29745	G29745-	G	-	104	104	B.1.1.294	0.131646
noncoding	29745	G29745-	G	-	102	102	AY.42	0.004103
noncoding	29745	G29745-	G	-	102	102	R.1	0.009181
noncoding	29745	G29745-	G	-	100	100	B.1.1.63	0.03858
noncoding	29745	G29745-	G	-	96	96	AY.73	0.063872
noncoding	29745	G29745T	G	T	94	94	B.1.258	0.006255
noncoding	29745	G29745-	G	-	92	92	AY.3	0.000915
noncoding	29745	G29745-	G	-	92	92	AY.47	0.002862
noncoding	29745	G29745T	G	T	90	90	B.1.1.220	0.167286
noncoding	29745	G29745T	G	T	86	86	AY.103	0.000534
noncoding	29745	G29745T	G	T	83	83	AY.3	0.000826
noncoding	29745	G29745-	G	-	83	83	B.1.243	0.005776
noncoding	29745	G29745T	G	T	75	75	B.1	0.000687
noncoding	29745	G29745-	G	-	67	67	B.1.596	0.005838
noncoding	29745	G29745T	G	T	65	65	AY.25	0.000391
noncoding	29745	G29745-	G	-	65	65	B.1.561	0.025804
noncoding	29745	G29745A	G	A	64	64	B.1.385	0.680851
noncoding	29745	G29745A	G	A	59	59	AY.4	0.000092
noncoding	29745	G29745T	G	T	59	59	AY.43	0.000261
noncoding	29745	G29745-	G	-	59	59	D.2	0.004427
noncoding	29745	G29745-	G	-	57	57	C.16	0.060445
noncoding	29745	G29745-	G	-	56	56	C.37	0.0065
noncoding	29745	G29745T	G	T	55	55	B.1.429	0.001294
noncoding	29745	G29745-	G	-	54	54	B.1.241	0.043831
noncoding	29745	G29745T	G	T	50	50	AY.5	0.001032
noncoding	29745	G29745T	G	T	46	46	B.1.369	0.01312
noncoding	29745	G29745T	G	T	46	46	B.1.380	0.304636
noncoding	29745	G29745-	G	-	46	46	B.1.637	0.003361
noncoding	29745	G29745-	G	-	45	45	B.1.240	0.0097
noncoding	29745	G29745-	G	-	44	44	B.1.177.24	0.056995
noncoding	29745	G29745-	G	-	44	44	B.1.595	0.011482
noncoding	29745	G29745-	G	-	43	43	AY.102	0.00114
noncoding	29745	G29745-	G	-	43	43	P.1.14	0.002055
noncoding	29745	G29745-	G	-	42	42	P.1.16	0.015713
noncoding	29745	G29745-	G	-	41	41	B.1.177.60	0.008956
noncoding	29745	G29745T	G	T	40	40	P.1	0.00063
noncoding	29745	G29745T	G	T	39	39	AY.44	0.000237
noncoding	29745	G29745C	G	C	38	38	B.1.1.7	0.000034
noncoding	29745	G29745-	G	-	38	38	B.1.36	0.005544
noncoding	29745	G29745-	G	-	38	38	M.1	0.883721
noncoding	29745	G29745-	G	-	35	35	AY.29	0.000552
noncoding	29745	G29745T	G	T	34	34	AD.2	0.007445
noncoding	29745	G29745-	G	-	34	34	AY.119	0.0012
noncoding	29745	G29745-	G	-	34	34	AY.26	0.000963
noncoding	29745	G29745A	G	A	34	34	AY.43	0.000151
noncoding	29745	G29745-	G	-	34	34	B.1.304	0.790698
noncoding	29745	G29745-	G	-	33	33	B.1.177.27	0.311321
noncoding	29745	G29745-	G	-	33	33	B.1.258.17	0.003431
noncoding	29745	G29745-	G	-	32	32	B.1.1.434	0.011154
noncoding	29745	G29745-	G	-	32	32	B.1.36.18	0.013445
noncoding	29745	G29745-	G	-	29	29	AY.100	0.001334
noncoding	29745	G29745-	G	-	29	29	AY.4.2	0.000629
noncoding	29745	G29745A	G	A	29	29	B.1.2	0.000255
noncoding	29745	G29745T	G	T	29	29	B.1.351	0.000862
noncoding	29745	G29745-	G	-	29	29	B.1.619	0.025261
noncoding	29745	G29745-	G	-	28	28	B.1.623	0.015021
noncoding	29745	G29745T	G	T	27	27	AY.102	0.000716
noncoding	29745	G29745-	G	-	27	27	B.1.1.37	0.005207
noncoding	29745	G29745-	G	-	27	27	B.1.346	0.035387
noncoding	29745	G29745-	G	-	26	26	AY.6	0.001069
noncoding	29745	G29745-	G	-	24	24	B.1.1.222	0.004896
noncoding	29745	G29745T	G	T	23	23	B.1.526	0.000541
noncoding	29745	G29745T	G	T	22	22	AY.39	0.000544
noncoding	29745	G29745-	G	-	22	22	B.1.1.368	0.067901
noncoding	29745	G29745-	G	-	21	21	AY.20	0.000816
noncoding	29745	G29745T	G	T	21	21	AY.26	0.000595
noncoding	29745	G29745-	G	-	21	21	AY.45	0.002555
noncoding	29745	G29745T	G	T	21	21	AY.9.2	0.000771
noncoding	29745	G29745-	G	-	21	21	B.1.1.265	0.066246
noncoding	29745	G29745-	G	-	21	21	B.1.1.39	0.010703
noncoding	29745	G29745-	G	-	21	21	B.1.1.397	0.047297
noncoding	29745	G29745T	G	T	21	21	B.1.189	0.090129
noncoding	29745	G29745-	G	-	21	21	B.1.305	0.045161
noncoding	29745	G29745A	G	A	20	20	AY.26	0.000566
noncoding	29745	G29745A	G	A	20	20	AY.44	0.000122
noncoding	29745	G29745-	G	-	20	20	B.1.1.174	0.067568
noncoding	29745	G29745-	G	-	20	20	B.1.311	0.005491
noncoding	29745	G29745-	G	-	20	20	B.1.404	0.026042
noncoding	29745	G29745-	G	-	20	20	B.1.576	0.018132
noncoding	29745	G29745-	G	-	20	20	B.1.588	0.018198
noncoding	29745	G29745-	G	-	19	19	AY.92	0.005458
noncoding	29745	G29745T	G	T	19	19	B.1.243	0.001322
noncoding	29745	G29745-	G	-	19	19	B.1.497	0.00598
noncoding	29745	G29745-	G	-	18	18	AY.118	0.001128
noncoding	29745	G29745T	G	T	18	18	AY.20	0.0007
noncoding	29745	G29745-	G	-	18	18	B.1.1.172	0.327273
noncoding	29745	G29745-	G	-	18	18	B.1.1.307	0.04557
noncoding	29745	G29745T	G	T	18	18	B.1.1.70	0.006139
noncoding	29745	G29745T	G	T	18	18	B.1.160	0.000561
noncoding	29745	G29745-	G	-	18	18	B.1.177.86	0.003302
noncoding	29745	G29745-	G	-	18	18	B.1.289	0.047872
noncoding	29745	G29745-	G	-	18	18	B.1.556	0.135338
noncoding	29745	G29745-	G	-	18	18	B.1.562	0.333333
noncoding	29745	G29745-	G	-	18	18	B.1.575	0.005461
noncoding	29745	G29745A	G	A	18	18	B.1.617.2	0.000068
noncoding	29745	G29745-	G	-	18	18	P.2	0.003359
noncoding	29745	G29745T	G	T	17	17	B.1.1.153	0.01862
noncoding	29745	G29745-	G	-	17	17	B.1.1.153	0.01862
noncoding	29745	G29745-	G	-	17	17	B.1.1.33	0.007155
noncoding	29745	G29745T	G	T	17	17	B.1.177.60	0.003713
noncoding	29745	G29745A	G	A	16	16	AY.25	0.000096
noncoding	29745	G29745-	G	-	16	16	B.1.1.28	0.00498
noncoding	29745	G29745T	G	T	16	16	B.1.177	0.000211
noncoding	29745	G29745-	G	-	16	16	B.1.258.14	0.015686
noncoding	29745	G29745-	G	-	16	16	B.1.36.1	0.018244
noncoding	29745	G29745T	G	T	16	16	B.1.409	0.0125
noncoding	29745	G29745A	G	A	16	16	B.1.635	0.280702
noncoding	29745	G29745-	G	-	15	15	B.1.1.214	0.000832
noncoding	29745	G29745-	G	-	15	15	B.1.36.29	0.00776
noncoding	29745	G29745T	G	T	14	14	A.23.1	0.009859
noncoding	29745	G29745A	G	A	14	14	AY.30	0.00554
noncoding	29745	G29745A	G	A	14	14	AY.4.2	0.000304
noncoding	29745	G29745-	G	-	14	14	AY.9	0.000946
noncoding	29745	G29745-	G	-	14	14	B.1.177.7	0.002308
noncoding	29745	G29745C	G	C	14	14	B.1.2	0.000123
noncoding	29745	G29745T	G	T	14	14	B.1.36.29	0.007243
noncoding	29745	G29745-	G	-	13	13	AY.61	0.001362
noncoding	29745	G29745-	G	-	13	13	AY.74	0.001503
noncoding	29745	G29745-	G	-	13	13	AY.75.1	0.002344
noncoding	29745	G29745-	G	-	13	13	AY.9.2	0.000477
noncoding	29745	G29745-	G	-	13	13	AY.98.1	0.00063
noncoding	29745	G29745-	G	-	13	13	B.1.1.25	0.007391
noncoding	29745	G29745-	G	-	13	13	B.1.416	0.016497
noncoding	29745	G29745-	G	-	13	13	B.1.581	0.122642
noncoding	29745	G29745-	G	-	13	13	P.1.15	0.00302
noncoding	29745	G29745-	G	-	12	12	B.1.1.306	0.005261
noncoding	29745	G29745-	G	-	12	12	B.1.1.317	0.00494
noncoding	29745	G29745-	G	-	12	12	B.1.1.416	0.01086
noncoding	29745	G29745-	G	-	12	12	B.1.110.3	0.008621
noncoding	29745	G29745-	G	-	12	12	B.1.177.75	0.012487
noncoding	29745	G29745C	G	C	12	12	B.1.427	0.000606
noncoding	29745	G29745A	G	A	12	12	N.5	0.021201
noncoding	29745	G29745-	G	-	11	11	A.1	0.0031
noncoding	29745	G29745-	G	-	11	11	AY.117	0.00093
noncoding	29745	G29745T	G	T	11	11	AY.120	0.000409
noncoding	29745	G29745-	G	-	11	11	AY.23	0.000767
noncoding	29745	G29745T	G	T	11	11	AY.46.5	0.002183
noncoding	29745	G29745-	G	-	11	11	AY.75	0.000616
noncoding	29745	G29745T	G	T	11	11	AY.9	0.000744
noncoding	29745	G29745-	G	-	11	11	AY.99.2	0.001014
noncoding	29745	G29745-	G	-	11	11	B	0.001406
noncoding	29745	G29745T	G	T	11	11	B.1.1.519	0.000437
noncoding	29745	G29745-	G	-	11	11	B.1.177.6	0.010742
noncoding	29745	G29745-	G	-	11	11	B.1.177.62	0.013111
noncoding	29745	G29745A	G	A	11	11	B.1.400	0.004719
noncoding	29745	G29745-	G	-	10	10	AY.114	0.002311
noncoding	29745	G29745-	G	-	10	10	AY.46.4	0.001645
noncoding	29745	G29745A	G	A	10	10	B.1	0.000092
noncoding	29745	G29745A	G	A	10	10	B.1.1	0.000181
noncoding	29745	G29745T	G	T	10	10	B.1.1.63	0.003858
noncoding	29745	G29745-	G	-	10	10	B.1.234	0.001319
noncoding	29745	G29745T	G	T	10	10	B.1.36	0.001459
noncoding	29745	G29745-	G	-	10	10	B.1.400	0.00429
noncoding	29745	G29745T	G	T	10	10	B.1.617.1	0.00129
noncoding	29745	G29745-	G	-	10	10	P.1.4	0.009766
noncoding	29745	G29745T	G	T	10	10	P.2	0.001866
noncoding	29745	G29745-	G	-	9	9	AY.12	0.002845
noncoding	29745	G29745-	G	-	9	9	AY.2	0.003205
noncoding	29745	G29745T	G	T	9	9	AY.23	0.000628
noncoding	29745	G29745T	G	T	9	9	AY.29	0.000142
noncoding	29745	G29745-	G	-	9	9	AY.34.1	0.004589
noncoding	29745	G29745-	G	-	9	9	AY.46	0.000937
noncoding	29745	G29745-	G	-	9	9	AY.46.5	0.001786
noncoding	29745	G29745-	G	-	9	9	AY.85	0.003845
noncoding	29745	G29745T	G	T	9	9	B.1.1.274	0.045455
noncoding	29745	G29745-	G	-	9	9	B.1.1.316	0.008326
noncoding	29745	G29745-	G	-	9	9	B.1.149	0.030822
noncoding	29745	G29745-	G	-	9	9	B.1.160.14	0.019068
noncoding	29745	G29745-	G	-	9	9	B.1.177.50	0.042254
noncoding	29745	G29745-	G	-	9	9	B.1.258.3	0.015075
noncoding	29745	G29745-	G	-	9	9	B.1.398	0.026786
noncoding	29745	G29745-	G	-	9	9	B.1.422	0.007311
noncoding	29745	G29745-	G	-	9	9	B.1.599	0.032847
noncoding	29745	G29745-	G	-	9	9	P.1.7	0.002874
noncoding	29745	G29745-	G	-	8	8	A	0.003096
noncoding	29745	G29745A	G	A	8	8	AY.103	0.00005
noncoding	29745	G29745-	G	-	8	8	AY.13	0.001288
noncoding	29745	G29745-	G	-	8	8	AY.34	0.000776
noncoding	29745	G29745-	G	-	8	8	AY.54	0.000763
noncoding	29745	G29745-	G	-	8	8	B.1.1.1	0.002614
noncoding	29745	G29745-	G	-	8	8	B.1.36.22	0.009662
noncoding	29745	G29745T	G	T	8	8	B.1.427	0.000404
noncoding	29745	G29745C	G	C	8	8	B.1.438.1	0.000858
noncoding	29745	G29745-	G	-	8	8	B.1.466.2	0.00313
noncoding	29745	G29745T	G	T	8	8	B.1.466.2	0.00313
noncoding	29745	G29745-	G	-	8	8	B.1.93	0.00747
noncoding	29745	G29745-	G	-	8	8	C.36.3	0.004538
noncoding	29745	G29745-	G	-	8	8	P.1.1	0.002541
noncoding	29745	G29745-	G	-	8	8	Q.4	0.003638
noncoding	29745	G29745A	G	A	7	7	AY.119	0.000247
noncoding	29745	G29745T	G	T	7	7	AY.121	0.000947
noncoding	29745	G29745A	G	A	7	7	AY.3	0.00007
noncoding	29745	G29745T	G	T	7	7	AY.33	0.000467
noncoding	29745	G29745T	G	T	7	7	AY.4.2	0.000152
noncoding	29745	G29745T	G	T	7	7	AY.47	0.000218
noncoding	29745	G29745-	G	-	7	7	B.1.1.318	0.002112
noncoding	29745	G29745C	G	C	7	7	B.1.1.39	0.003568
noncoding	29745	G29745A	G	A	7	7	B.1.1.519	0.000278
noncoding	29745	G29745-	G	-	7	7	B.1.1.526	0.024823
noncoding	29745	G29745-	G	-	7	7	B.1.160.33	0.030973
noncoding	29745	G29745T	G	T	7	7	B.1.177.21	0.000535
noncoding	29745	G29745-	G	-	7	7	B.1.177.73	0.003964
noncoding	29745	G29745T	G	T	7	7	C.36.3.1	0.019022
noncoding	29745	G29745-	G	-	7	7	N.5	0.012367
noncoding	29745	G29745-	G	-	6	6	AY.14	0.000528
noncoding	29745	G29745-	G	-	6	6	AY.33	0.000401
noncoding	29745	G29745-	G	-	6	6	AY.35	0.001398
noncoding	29745	G29745T	G	T	6	6	AY.42	0.000241
noncoding	29745	G29745T	G	T	6	6	AY.61	0.000629
noncoding	29745	G29745-	G	-	6	6	AY.65	0.003198
noncoding	29745	G29745C	G	C	6	6	B.1.1	0.000109
noncoding	29745	G29745T	G	T	6	6	B.1.1.265	0.018927
noncoding	29745	G29745T	G	T	6	6	B.1.1.37	0.001157
noncoding	29745	G29745C	G	C	6	6	B.1.1.83	0.01626
noncoding	29745	G29745T	G	T	6	6	B.1.110.3	0.00431
noncoding	29745	G29745-	G	-	6	6	B.1.177.12	0.00091
noncoding	29745	G29745C	G	C	6	6	B.1.177.86	0.001101
noncoding	29745	G29745T	G	T	6	6	B.1.177.87	0.004367
noncoding	29745	G29745-	G	-	6	6	B.1.177.87	0.004367
noncoding	29745	G29745T	G	T	6	6	B.1.258.17	0.000624
noncoding	29745	G29745-	G	-	6	6	B.1.389	0.006012
noncoding	29745	G29745-	G	-	6	6	B.1.517	0.002562
noncoding	29745	G29745T	G	T	6	6	B.1.575	0.00182
noncoding	29745	G29745-	G	-	6	6	B.39	0.013986
noncoding	29745	G29745-	G	-	6	6	B.40	0.002186
noncoding	29745	G29745-	G	-	6	6	N.4	0.025532
noncoding	29745	G29745-	G	-	6	6	Q.2	0.003681
noncoding	29745	G29745A	G	A	5	5	AY.113	0.000712
noncoding	29745	G29745T	G	T	5	5	AY.119	0.000177
noncoding	29745	G29745T	G	T	5	5	AY.29.1	0.001103
noncoding	29745	G29745-	G	-	5	5	AY.36	0.000741
noncoding	29745	G29745T	G	T	5	5	AY.41	0.00147
noncoding	29745	G29745T	G	T	5	5	AY.46	0.00052
noncoding	29745	G29745-	G	-	5	5	AY.84	0.002187
noncoding	29745	G29745A	G	A	5	5	AY.98.1	0.000242
noncoding	29745	G29745T	G	T	5	5	AY.98.1	0.000242
noncoding	29745	G29745-	G	-	5	5	B.1.1.189	0.007564
noncoding	29745	G29745-	G	-	5	5	B.1.1.192	0.011547
noncoding	29745	G29745-	G	-	5	5	B.1.1.198	0.007342
noncoding	29745	G29745T	G	T	5	5	B.1.1.219	0.025
noncoding	29745	G29745-	G	-	5	5	B.1.1.288	0.009579
noncoding	29745	G29745-	G	-	5	5	B.1.1.369	0.002231
noncoding	29745	G29745T	G	T	5	5	B.1.146	0.021186
noncoding	29745	G29745T	G	T	5	5	B.1.160.7	0.010395
noncoding	29745	G29745-	G	-	5	5	B.1.177.32	0.006748
noncoding	29745	G29745T	G	T	5	5	B.1.177.75	0.005203
noncoding	29745	G29745-	G	-	5	5	B.1.210	0.010661
noncoding	29745	G29745-	G	-	5	5	B.1.416.1	0.007812
noncoding	29745	G29745-	G	-	5	5	B.1.609	0.002397
noncoding	29745	G29745C	G	C	5	5	B.1.617.2	0.000019
noncoding	29745	G29745A	G	A	5	5	P.1	0.000079
noncoding	29745	G29745-	G	-	5	5	P.1.12	0.00242
noncoding	29745	G29745-	G	-	5	5	P.1.17	0.000809
noncoding	29745	G29745-	G	-	5	5	P.5	0.068493
noncoding	29745	G29745-	G	-	4	4	A.2.5	0.001996
noncoding	29745	G29745-	G	-	4	4	AY.109	0.002959
noncoding	29745	G29745T	G	T	4	4	AY.113	0.00057
noncoding	29745	G29745T	G	T	4	4	AY.120.2	0.005141
noncoding	29745	G29745-	G	-	4	4	AY.30	0.001583
noncoding	29745	G29745A	G	A	4	4	AY.40	0.003857
noncoding	29745	G29745T	G	T	4	4	AY.45	0.000487
noncoding	29745	G29745C	G	C	4	4	AY.46.5	0.000794
noncoding	29745	G29745-	G	-	4	4	AY.59	0.002119
noncoding	29745	G29745T	G	T	4	4	B.1.1.222	0.000816
noncoding	29745	G29745-	G	-	4	4	B.1.1.312	0.007648
noncoding	29745	G29745T	G	T	4	4	B.1.1.326	0.007042
noncoding	29745	G29745-	G	-	4	4	B.1.1.337	0.014388
noncoding	29745	G29745-	G	-	4	4	B.1.1.385	0.017857
noncoding	29745	G29745-	G	-	4	4	B.1.1.41	0.025316
noncoding	29745	G29745-	G	-	4	4	B.1.1.46	0.017467
noncoding	29745	G29745-	G	-	4	4	B.1.1.462	0.034483
noncoding	29745	G29745-	G	-	4	4	B.1.1.464	0.005891
noncoding	29745	G29745A	G	A	4	4	B.1.177	0.000053
noncoding	29745	G29745-	G	-	4	4	B.1.177.18	0.00464
noncoding	29745	G29745-	G	-	4	4	B.1.177.42	0.003578
noncoding	29745	G29745-	G	-	4	4	B.1.177.56	0.00267
noncoding	29745	G29745-	G	-	4	4	B.1.206	0.003263
noncoding	29745	G29745T	G	T	4	4	B.1.221	0.000284
noncoding	29745	G29745T	G	T	4	4	B.1.234	0.000528
noncoding	29745	G29745T	G	T	4	4	B.1.324	0.006421
noncoding	29745	G29745A	G	A	4	4	B.1.351	0.000119
noncoding	29745	G29745-	G	-	4	4	B.1.351.3	0.003506
noncoding	29745	G29745-	G	-	4	4	B.1.369	0.001141
noncoding	29745	G29745-	G	-	4	4	B.1.399	0.007737
noncoding	29745	G29745T	G	T	4	4	B.1.416	0.005076
noncoding	29745	G29745-	G	-	4	4	B.1.438.1	0.000429
noncoding	29745	G29745A	G	A	4	4	B.1.466.2	0.001565
noncoding	29745	G29745-	G	-	4	4	B.1.469	0.01444
noncoding	29745	G29745-	G	-	4	4	B.1.568	0.004444
noncoding	29745	G29745T	G	T	4	4	B.1.575.1	0.009756
noncoding	29745	G29745-	G	-	4	4	B.1.582	0.001963
noncoding	29745	G29745T	G	T	4	4	B.1.596	0.000349
noncoding	29745	G29745T	G	T	4	4	C.37.1	0.010471
noncoding	29745	G29745-	G	-	4	4	P.1.10	0.001078
noncoding	29745	G29745T	G	T	4	4	P.1.7	0.001277
noncoding	29745	G29745-	G	-	4	4	Q.8	0.00066
noncoding	29745	G29745T	G	T	3	3	A.25	0.054545
noncoding	29745	G29745T	G	T	3	3	AY.100	0.000138
noncoding	29745	G29745-	G	-	3	3	AY.110	0.000338
noncoding	29745	G29745-	G	-	3	3	AY.111	0.000549
noncoding	29745	G29745T	G	T	3	3	AY.117	0.000254
noncoding	29745	G29745T	G	T	3	3	AY.16	0.001139
noncoding	29745	G29745T	G	T	3	3	AY.19	0.003421
noncoding	29745	G29745-	G	-	3	3	AY.27	0.000194
noncoding	29745	G29745-	G	-	3	3	AY.3.1	0.000256
noncoding	29745	G29745-	G	-	3	3	AY.32	0.001597
noncoding	29745	G29745T	G	T	3	3	AY.34.1	0.00153
noncoding	29745	G29745-	G	-	3	3	AY.39.1	0.000119
noncoding	29745	G29745T	G	T	3	3	AY.4.5	0.000322
noncoding	29745	G29745-	G	-	3	3	AY.40	0.002893
noncoding	29745	G29745-	G	-	3	3	AY.5.3	0.001012
noncoding	29745	G29745-	G	-	3	3	AY.51	0.002727
noncoding	29745	G29745A	G	A	3	3	AY.6	0.000123
noncoding	29745	G29745-	G	-	3	3	AY.62	0.001307
noncoding	29745	G29745-	G	-	3	3	AY.7	0.000588
noncoding	29745	G29745A	G	A	3	3	AY.75	0.000168
noncoding	29745	G29745T	G	T	3	3	AY.75	0.000168
noncoding	29745	G29745-	G	-	3	3	AY.9.1	0.000251
noncoding	29745	G29745-	G	-	3	3	B.1.1.135	0.014085
noncoding	29745	G29745-	G	-	3	3	B.1.1.228	0.009146
noncoding	29745	G29745-	G	-	3	3	B.1.1.236	0.02069
noncoding	29745	G29745T	G	T	3	3	B.1.1.25	0.001706
noncoding	29745	G29745-	G	-	3	3	B.1.1.277	0.002276
noncoding	29745	G29745-	G	-	3	3	B.1.1.284	0.000322
noncoding	29745	G29745-	G	-	3	3	B.1.1.375	0.035714
noncoding	29745	G29745-	G	-	3	3	B.1.1.401	0.2
noncoding	29745	G29745T	G	T	3	3	B.1.1.408	0.083333
noncoding	29745	G29745-	G	-	3	3	B.1.1.428	0.028302
noncoding	29745	G29745-	G	-	3	3	B.1.1.518	0.018987
noncoding	29745	G29745-	G	-	3	3	B.1.1.57	0.034483
noncoding	29745	G29745-	G	-	3	3	B.1.1.70	0.001023
noncoding	29745	G29745-	G	-	3	3	B.1.145	0.157895
noncoding	29745	G29745A	G	A	3	3	B.1.160	0.000094
noncoding	29745	G29745-	G	-	3	3	B.1.177.21	0.000229
noncoding	29745	G29745-	G	-	3	3	B.1.177.37	0.081081
noncoding	29745	G29745-	G	-	3	3	B.1.177.44	0.001557
noncoding	29745	G29745A	G	A	3	3	B.1.177.50	0.014085
noncoding	29745	G29745-	G	-	3	3	B.1.177.55	0.006993
noncoding	29745	G29745-	G	-	3	3	B.1.229	0.029126
noncoding	29745	G29745-	G	-	3	3	B.1.258.21	0.023256
noncoding	29745	G29745T	G	T	3	3	B.1.267	0.055556
noncoding	29745	G29745-	G	-	3	3	B.1.349	0.002144
noncoding	29745	G29745T	G	T	3	3	B.1.351.3	0.002629
noncoding	29745	G29745-	G	-	3	3	B.1.356	0.005181
noncoding	29745	G29745-	G	-	3	3	B.1.36.16	0.004274
noncoding	29745	G29745-	G	-	3	3	B.1.36.17	0.001482
noncoding	29745	G29745T	G	T	3	3	B.1.36.27	0.00229
noncoding	29745	G29745-	G	-	3	3	B.1.36.31	0.005254
noncoding	29745	G29745-	G	-	3	3	B.1.396	0.002117
noncoding	29745	G29745-	G	-	3	3	B.1.409	0.002344
noncoding	29745	G29745C	G	C	3	3	B.1.429	0.000071
noncoding	29745	G29745A	G	A	3	3	B.1.429	0.000071
noncoding	29745	G29745-	G	-	3	3	B.1.44	0.025
noncoding	29745	G29745-	G	-	3	3	B.1.441	0.028846
noncoding	29745	G29745-	G	-	3	3	B.1.505	0.013158
noncoding	29745	G29745A	G	A	3	3	B.1.525	0.000339
noncoding	29745	G29745-	G	-	3	3	B.1.560	0.013889
noncoding	29745	G29745-	G	-	3	3	B.1.565	0.002431
noncoding	29745	G29745-	G	-	3	3	B.1.577	0.002062
noncoding	29745	G29745-	G	-	3	3	B.1.590	0.013636
noncoding	29745	G29745A	G	A	3	3	B.1.617.1	0.000387
noncoding	29745	G29745-	G	-	3	3	B.1.627	0.006061
noncoding	29745	G29745T	G	T	3	3	B.1.630	0.015707
noncoding	29745	G29745-	G	-	3	3	B.1.9.4	0.018405
noncoding	29745	G29745T	G	T	3	3	C.37	0.000348
noncoding	29745	G29745T	G	T	3	3	P.1.14	0.000143
noncoding	29745	G29745-	G	-	3	3	Q.1	0.000379
noncoding	29745	G29745-	G	-	2	2	A.2.3	0.009479
noncoding	29745	G29745-	G	-	2	2	A.23.1	0.001408
noncoding	29745	G29745-	G	-	2	2	AA.1	0.014493
noncoding	29745	G29745-	G	-	2	2	AD.2	0.000438
noncoding	29745	G29745-	G	-	2	2	AN.1	0.04
noncoding	29745	G29745-	G	-	2	2	AY.10	0.00106
noncoding	29745	G29745A	G	A	2	2	AY.101	0.000981
noncoding	29745	G29745C	G	C	2	2	AY.103	0.000012
noncoding	29745	G29745-	G	-	2	2	AY.106	0.00067
noncoding	29745	G29745-	G	-	2	2	AY.19	0.002281
noncoding	29745	G29745T	G	T	2	2	AY.22	0.004184
noncoding	29745	G29745A	G	A	2	2	AY.23	0.000139
noncoding	29745	G29745A	G	A	2	2	AY.29	0.000032
noncoding	29745	G29745T	G	T	2	2	AY.32	0.001065
noncoding	29745	G29745T	G	T	2	2	AY.36	0.000296
noncoding	29745	G29745-	G	-	2	2	AY.46.2	0.001271
noncoding	29745	G29745T	G	T	2	2	AY.46.2	0.001271
noncoding	29745	G29745-	G	-	2	2	AY.46.3	0.001867
noncoding	29745	G29745T	G	T	2	2	AY.46.6	0.000144
noncoding	29745	G29745T	G	T	2	2	AY.52	0.001629
noncoding	29745	G29745-	G	-	2	2	AY.56	0.00321
noncoding	29745	G29745T	G	T	2	2	AY.60	0.001876
noncoding	29745	G29745T	G	T	2	2	AY.7.1	0.000225
noncoding	29745	G29745-	G	-	2	2	AY.71	0.00095
noncoding	29745	G29745T	G	T	2	2	AY.75.1	0.000361
noncoding	29745	G29745T	G	T	2	2	AY.79	0.002421
noncoding	29745	G29745T	G	T	2	2	AY.85	0.000854
noncoding	29745	G29745-	G	-	2	2	AY.94	0.000885
noncoding	29745	G29745-	G	-	2	2	AY.95	0.001522
noncoding	29745	G29745-	G	-	2	2	AY.98	0.000158
noncoding	29745	G29745T	G	T	2	2	AY.99	0.002099
noncoding	29745	G29745T	G	T	2	2	AY.99.2	0.000184
noncoding	29745	G29745-	G	-	2	2	AZ.2	0.001642
noncoding	29745	G29745-	G	-	2	2	B.1.1.161	0.007067
noncoding	29745	G29745-	G	-	2	2	B.1.1.170	0.002494
noncoding	29745	G29745T	G	T	2	2	B.1.1.176	0.000879
noncoding	29745	G29745-	G	-	2	2	B.1.1.216	0.001781
noncoding	29745	G29745T	G	T	2	2	B.1.1.216	0.001781
noncoding	29745	G29745-	G	-	2	2	B.1.1.218	0.015385
noncoding	29745	G29745T	G	T	2	2	B.1.1.263	0.003115
noncoding	29745	G29745-	G	-	2	2	B.1.1.275	0.022472
noncoding	29745	G29745T	G	T	2	2	B.1.1.28	0.000622
noncoding	29745	G29745-	G	-	2	2	B.1.1.289	0.004167
noncoding	29745	G29745T	G	T	2	2	B.1.1.291	0.001485
noncoding	29745	G29745-	G	-	2	2	B.1.1.303	0.005525
noncoding	29745	G29745-	G	-	2	2	B.1.1.305	0.007722
noncoding	29745	G29745T	G	T	2	2	B.1.1.306	0.000877
noncoding	29745	G29745T	G	T	2	2	B.1.1.318	0.000604
noncoding	29745	G29745T	G	T	2	2	B.1.1.33	0.000842
noncoding	29745	G29745-	G	-	2	2	B.1.1.345	0.086957
noncoding	29745	G29745-	G	-	2	2	B.1.1.348	0.001592
noncoding	29745	G29745-	G	-	2	2	B.1.1.354	0.008772
noncoding	29745	G29745T	G	T	2	2	B.1.1.358	0.068966
noncoding	29745	G29745-	G	-	2	2	B.1.1.372	0.001377
noncoding	29745	G29745-	G	-	2	2	B.1.1.376	0.011905
noncoding	29745	G29745-	G	-	2	2	B.1.1.389	0.012121
noncoding	29745	G29745T	G	T	2	2	B.1.1.413	0.013793
noncoding	29745	G29745-	G	-	2	2	B.1.1.432	0.002532
noncoding	29745	G29745A	G	A	2	2	B.1.1.434	0.000697
noncoding	29745	G29745-	G	-	2	2	B.1.1.466	0.017391
noncoding	29745	G29745-	G	-	2	2	B.1.1.50	0.001358
noncoding	29745	G29745T	G	T	2	2	B.1.1.51	0.003436
noncoding	29745	G29745-	G	-	2	2	B.1.1.528	0.009615
noncoding	29745	G29745-	G	-	2	2	B.1.1.71	0.012121
noncoding	29745	G29745-	G	-	2	2	B.1.110	0.00905
noncoding	29745	G29745-	G	-	2	2	B.1.111	0.00235
noncoding	29745	G29745T	G	T	2	2	B.1.111	0.00235
noncoding	29745	G29745-	G	-	2	2	B.1.126	0.002551
noncoding	29745	G29745-	G	-	2	2	B.1.160.32	0.008584
noncoding	29745	G29745-	G	-	2	2	B.1.177.10	0.001756
noncoding	29745	G29745-	G	-	2	2	B.1.177.4	0.000422
noncoding	29745	G29745-	G	-	2	2	B.1.177.57	0.000562
noncoding	29745	G29745-	G	-	2	2	B.1.177.77	0.001452
noncoding	29745	G29745-	G	-	2	2	B.1.177.78	0.019417
noncoding	29745	G29745T	G	T	2	2	B.1.177.86	0.000367
noncoding	29745	G29745-	G	-	2	2	B.1.189	0.008584
noncoding	29745	G29745T	G	T	2	2	B.1.210	0.004264
noncoding	29745	G29745-	G	-	2	2	B.1.214.2	0.001199
noncoding	29745	G29745-	G	-	2	2	B.1.23	0.012121
noncoding	29745	G29745T	G	T	2	2	B.1.237	0.00995
noncoding	29745	G29745T	G	T	2	2	B.1.254	0.05
noncoding	29745	G29745C	G	C	2	2	B.1.258	0.000133
noncoding	29745	G29745-	G	-	2	2	B.1.258.10	0.022727
noncoding	29745	G29745-	G	-	2	2	B.1.298	0.004228
noncoding	29745	G29745-	G	-	2	2	B.1.301	0.011834
noncoding	29745	G29745T	G	T	2	2	B.1.306	0.011429
noncoding	29745	G29745-	G	-	2	2	B.1.350	0.005865
noncoding	29745	G29745A	G	A	2	2	B.1.350	0.005865
noncoding	29745	G29745T	G	T	2	2	B.1.351.2	0.000605
noncoding	29745	G29745-	G	-	2	2	B.1.36.10	0.009569
noncoding	29745	G29745T	G	T	2	2	B.1.36.22	0.002415
noncoding	29745	G29745-	G	-	2	2	B.1.36.26	0.005714
noncoding	29745	G29745-	G	-	2	2	B.1.36.8	0.002
noncoding	29745	G29745-	G	-	2	2	B.1.361	0.002577
noncoding	29745	G29745T	G	T	2	2	B.1.362	0.003082
noncoding	29745	G29745-	G	-	2	2	B.1.391	0.002255
noncoding	29745	G29745T	G	T	2	2	B.1.399	0.003868
noncoding	29745	G29745-	G	-	2	2	B.1.425	0.005988
noncoding	29745	G29745-	G	-	2	2	B.1.436	0.002058
noncoding	29745	G29745T	G	T	2	2	B.1.438.4	0.042553
noncoding	29745	G29745T	G	T	2	2	B.1.466.1	0.014388
noncoding	29745	G29745-	G	-	2	2	B.1.470	0.002809
noncoding	29745	G29745T	G	T	2	2	B.1.499	0.002101
noncoding	29745	G29745-	G	-	2	2	B.1.503	0.004975
noncoding	29745	G29745-	G	-	2	2	B.1.509	0.001732
noncoding	29745	G29745A	G	A	2	2	B.1.526	0.000047
noncoding	29745	G29745-	G	-	2	2	B.1.543	0.02
noncoding	29745	G29745-	G	-	2	2	B.1.551	0.002581
noncoding	29745	G29745-	G	-	2	2	B.1.567	0.006667
noncoding	29745	G29745-	G	-	2	2	B.1.575.1	0.004878
noncoding	29745	G29745T	G	T	2	2	B.1.582	0.000981
noncoding	29745	G29745-	G	-	2	2	B.1.617.1	0.000258
noncoding	29745	G29745T	G	T	2	2	B.1.620	0.001892
noncoding	29745	G29745-	G	-	2	2	B.1.620	0.001892
noncoding	29745	G29745T	G	T	2	2	B.1.621	0.000177
noncoding	29745	G29745A	G	A	2	2	B.1.621	0.000177
noncoding	29745	G29745-	G	-	2	2	B.1.628	0.000705
noncoding	29745	G29745-	G	-	2	2	B.3.1	0.003317
noncoding	29745	G29745T	G	T	2	2	B.6.6	0.001778
noncoding	29745	G29745-	G	-	2	2	C.38	0.016129
noncoding	29745	G29745C	G	C	2	2	P.1	0.000032
noncoding	29745	G29745T	G	T	2	2	P.1.12	0.000968
noncoding	29745	G29745-	G	-	2	2	P.1.13	0.001797
noncoding	29745	G29745-	G	-	2	2	P.6	0.006289
noncoding	29745	G29745T	G	T	1	1	A	0.000387
noncoding	29745	G29745C	G	C	1	1	A.2	0.000662
noncoding	29745	G29745-	G	-	1	1	A.2	0.000662
noncoding	29745	G29745A	G	A	1	1	A.2.5	0.000499
noncoding	29745	G29745T	G	T	1	1	A.2.5	0.000499
noncoding	29745	G29745-	G	-	1	1	A.21	0.00277
noncoding	29745	G29745T	G	T	1	1	A.23	0.010526
noncoding	29745	G29745T	G	T	1	1	A.6	0.005128
noncoding	29745	G29745-	G	-	1	1	AH.2	0.012048
noncoding	29745	G29745-	G	-	1	1	AK.2	0.045455
noncoding	29745	G29745V	G	V	1	1	All	0
noncoding	29745	G29745T	G	T	1	1	AP.1	0.001502
noncoding	29745	G29745-	G	-	1	1	AT.1	0.005128
noncoding	29745	G29745-	G	-	1	1	AU.1	0.001266
noncoding	29745	G29745-	G	-	1	1	AU.3	0.00211
noncoding	29745	G29745A	G	A	1	1	AY.100	0.000046
noncoding	29745	G29745A	G	A	1	1	AY.102	0.000027
noncoding	29745	G29745T	G	T	1	1	AY.104	0.001984
noncoding	29745	G29745-	G	-	1	1	AY.105	0.000643
noncoding	29745	G29745T	G	T	1	1	AY.106	0.000335
noncoding	29745	G29745-	G	-	1	1	AY.108	0.001103
noncoding	29745	G29745T	G	T	1	1	AY.111	0.000183
noncoding	29745	G29745A	G	A	1	1	AY.111	0.000183
noncoding	29745	G29745T	G	T	1	1	AY.116	0.000287
noncoding	29745	G29745-	G	-	1	1	AY.116.1	0.000311
noncoding	29745	G29745T	G	T	1	1	AY.118	0.000063
noncoding	29745	G29745T	G	T	1	1	AY.12	0.000316
noncoding	29745	G29745-	G	-	1	1	AY.120.1	0.000321
noncoding	29745	G29745-	G	-	1	1	AY.120.2.1	0.000498
noncoding	29745	G29745A	G	A	1	1	AY.121	0.000135
noncoding	29745	G29745-	G	-	1	1	AY.16	0.00038
noncoding	29745	G29745T	G	T	1	1	AY.16.1	0.00047
noncoding	29745	G29745A	G	A	1	1	AY.19	0.00114
noncoding	29745	G29745A	G	A	1	1	AY.20	0.000039
noncoding	29745	G29745C	G	C	1	1	AY.20	0.000039
noncoding	29745	G29745-	G	-	1	1	AY.24	0.000431
noncoding	29745	G29745C	G	C	1	1	AY.25	0.000006
noncoding	29745	G29745A	G	A	1	1	AY.27	0.000065
noncoding	29745	G29745-	G	-	1	1	AY.29.1	0.000221
noncoding	29745	G29745C	G	C	1	1	AY.3	0.00001
noncoding	29745	G29745A	G	A	1	1	AY.3.1	0.000085
noncoding	29745	G29745A	G	A	1	1	AY.34	0.000097
noncoding	29745	G29745T	G	T	1	1	AY.34	0.000097
noncoding	29745	G29745A	G	A	1	1	AY.37	0.000316
noncoding	29745	G29745A	G	A	1	1	AY.39	0.000025
noncoding	29745	G29745T	G	T	1	1	AY.39.1	0.00004
noncoding	29745	G29745A	G	A	1	1	AY.39.1	0.00004
noncoding	29745	G29745-	G	-	1	1	AY.4.2.1	0.000149
noncoding	29745	G29745C	G	C	1	1	AY.43	0.000004
noncoding	29745	G29745C	G	C	1	1	AY.46	0.000104
noncoding	29745	G29745A	G	A	1	1	AY.46.6	0.000072
noncoding	29745	G29745-	G	-	1	1	AY.48	0.000465
noncoding	29745	G29745T	G	T	1	1	AY.5.3	0.000337
noncoding	29745	G29745T	G	T	1	1	AY.51	0.000909
noncoding	29745	G29745-	G	-	1	1	AY.52	0.000814
noncoding	29745	G29745-	G	-	1	1	AY.53	0.000288
noncoding	29745	G29745-	G	-	1	1	AY.55	0.000917
noncoding	29745	G29745T	G	T	1	1	AY.6	0.000041
noncoding	29745	G29745T	G	T	1	1	AY.63	0.000387
noncoding	29745	G29745-	G	-	1	1	AY.66	0.00107
noncoding	29745	G29745T	G	T	1	1	AY.68	0.000274
noncoding	29745	G29745A	G	A	1	1	AY.69	0.000187
noncoding	29745	G29745T	G	T	1	1	AY.69	0.000187
noncoding	29745	G29745C	G	C	1	1	AY.69	0.000187
noncoding	29745	G29745T	G	T	1	1	AY.7	0.000196
noncoding	29745	G29745A	G	A	1	1	AY.7.1	0.000113
noncoding	29745	G29745T	G	T	1	1	AY.7.2	0.000559
noncoding	29745	G29745C	G	C	1	1	AY.75.1	0.00018
noncoding	29745	G29745A	G	A	1	1	AY.75.1	0.00018
noncoding	29745	G29745T	G	T	1	1	AY.76	0.004831
noncoding	29745	G29745T	G	T	1	1	AY.78	0.001541
noncoding	29745	G29745A	G	A	1	1	AY.79	0.001211
noncoding	29745	G29745T	G	T	1	1	AY.8	0.000606
noncoding	29745	G29745-	G	-	1	1	AY.81	0.001992
noncoding	29745	G29745T	G	T	1	1	AY.84	0.000437
noncoding	29745	G29745T	G	T	1	1	AY.86	0.00083
noncoding	29745	G29745-	G	-	1	1	AY.87	0.000833
noncoding	29745	G29745-	G	-	1	1	AY.88	0.000884
noncoding	29745	G29745T	G	T	1	1	AY.9.1	0.000084
noncoding	29745	G29745-	G	-	1	1	AY.91	0.00073
noncoding	29745	G29745A	G	A	1	1	AY.93	0.000273
noncoding	29745	G29745T	G	T	1	1	AY.98	0.000079
noncoding	29745	G29745C	G	C	1	1	AY.98	0.000079
noncoding	29745	G29745A	G	A	1	1	AY.99.2	0.000092
noncoding	29745	G29745C	G	C	1	1	AY.99.2	0.000092
noncoding	29745	G29745T	G	T	1	1	AZ.1	0.000867
noncoding	29745	G29745-	G	-	1	1	AZ.1	0.000867
noncoding	29745	G29745A	G	A	1	1	B	0.000128
noncoding	29745	G29745T	G	T	1	1	B.1.1.1	0.000327
noncoding	29745	G29745-	G	-	1	1	B.1.1.10	0.001115
noncoding	29745	G29745T	G	T	1	1	B.1.1.10	0.001115
noncoding	29745	G29745-	G	-	1	1	B.1.1.139	0.022727
noncoding	29745	G29745-	G	-	1	1	B.1.1.154	0.04
noncoding	29745	G29745T	G	T	1	1	B.1.1.161	0.003534
noncoding	29745	G29745-	G	-	1	1	B.1.1.171	0.003676
noncoding	29745	G29745-	G	-	1	1	B.1.1.186	0.003436
noncoding	29745	G29745-	G	-	1	1	B.1.1.196	0.005714
noncoding	29745	G29745-	G	-	1	1	B.1.1.197	0.037037
noncoding	29745	G29745-	G	-	1	1	B.1.1.205	0.003717
noncoding	29745	G29745T	G	T	1	1	B.1.1.214	0.000055
noncoding	29745	G29745-	G	-	1	1	B.1.1.220	0.001859
noncoding	29745	G29745T	G	T	1	1	B.1.1.221	0.010101
noncoding	29745	G29745T	G	T	1	1	B.1.1.225	0.007194
noncoding	29745	G29745-	G	-	1	1	B.1.1.227	0.004348
noncoding	29745	G29745-	G	-	1	1	B.1.1.229	0.005747
noncoding	29745	G29745T	G	T	1	1	B.1.1.231	0.003096
noncoding	29745	G29745-	G	-	1	1	B.1.1.263	0.001558
noncoding	29745	G29745A	G	A	1	1	B.1.1.27	0.00565
noncoding	29745	G29745A	G	A	1	1	B.1.1.277	0.000759
noncoding	29745	G29745A	G	A	1	1	B.1.1.28	0.000311
noncoding	29745	G29745T	G	T	1	1	B.1.1.284	0.000107
noncoding	29745	G29745-	G	-	1	1	B.1.1.286	0.002899
noncoding	29745	G29745T	G	T	1	1	B.1.1.294	0.001266
noncoding	29745	G29745-	G	-	1	1	B.1.1.297	0.002237
noncoding	29745	G29745-	G	-	1	1	B.1.1.298	0.000862
noncoding	29745	G29745A	G	A	1	1	B.1.1.306	0.000438
noncoding	29745	G29745T	G	T	1	1	B.1.1.317	0.000412
noncoding	29745	G29745-	G	-	1	1	B.1.1.327	0.1
noncoding	29745	G29745-	G	-	1	1	B.1.1.352	0.03125
noncoding	29745	G29745-	G	-	1	1	B.1.1.362	0.005618
noncoding	29745	G29745T	G	T	1	1	B.1.1.371	0.010417
noncoding	29745	G29745T	G	T	1	1	B.1.1.372	0.000689
noncoding	29745	G29745-	G	-	1	1	B.1.1.387	0.058824
noncoding	29745	G29745T	G	T	1	1	B.1.1.398	0.003226
noncoding	29745	G29745-	G	-	1	1	B.1.1.398	0.003226
noncoding	29745	G29745T	G	T	1	1	B.1.1.403	0.025641
noncoding	29745	G29745T	G	T	1	1	B.1.1.404	0.015873
noncoding	29745	G29745-	G	-	1	1	B.1.1.409	0.002833
noncoding	29745	G29745T	G	T	1	1	B.1.1.409	0.002833
noncoding	29745	G29745-	G	-	1	1	B.1.1.413	0.006897
noncoding	29745	G29745T	G	T	1	1	B.1.1.416	0.000905
noncoding	29745	G29745-	G	-	1	1	B.1.1.420	0.001006
noncoding	29745	G29745T	G	T	1	1	B.1.1.432	0.001266
noncoding	29745	G29745-	G	-	1	1	B.1.1.433	0.001425
noncoding	29745	G29745T	G	T	1	1	B.1.1.434	0.000349
noncoding	29745	G29745T	G	T	1	1	B.1.1.45	0.014085
noncoding	29745	G29745T	G	T	1	1	B.1.1.46	0.004367
noncoding	29745	G29745T	G	T	1	1	B.1.1.464	0.001473
noncoding	29745	G29745T	G	T	1	1	B.1.1.467	0.019231
noncoding	29745	G29745-	G	-	1	1	B.1.1.47	0.005348
noncoding	29745	G29745T	G	T	1	1	B.1.1.487	0.005587
noncoding	29745	G29745A	G	A	1	1	B.1.1.50	0.000679
noncoding	29745	G29745C	G	C	1	1	B.1.1.507	0.008696
noncoding	29745	G29745-	G	-	1	1	B.1.1.517	0.006803
noncoding	29745	G29745C	G	C	1	1	B.1.1.519	0.00004
noncoding	29745	G29745T	G	T	1	1	B.1.1.8	0.003584
noncoding	29745	G29745-	G	-	1	1	B.1.139	0.000733
noncoding	29745	G29745A	G	A	1	1	B.1.157	0.002985
noncoding	29745	G29745-	G	-	1	1	B.1.159	0.012195
noncoding	29745	G29745-	G	-	1	1	B.1.160.15	0.00495
noncoding	29745	G29745-	G	-	1	1	B.1.160.27	0.015152
noncoding	29745	G29745-	G	-	1	1	B.1.160.7	0.002079
noncoding	29745	G29745-	G	-	1	1	B.1.162	0.005025
noncoding	29745	G29745-	G	-	1	1	B.1.167	0.007812
noncoding	29745	G29745-	G	-	1	1	B.1.170	0.00431
noncoding	29745	G29745C	G	C	1	1	B.1.177	0.000013
noncoding	29745	G29745T	G	T	1	1	B.1.177.11	0.001698
noncoding	29745	G29745-	G	-	1	1	B.1.177.23	0.003236
noncoding	29745	G29745-	G	-	1	1	B.1.177.30	0.002513
noncoding	29745	G29745-	G	-	1	1	B.1.177.35	0.000691
noncoding	29745	G29745T	G	T	1	1	B.1.177.4	0.000211
noncoding	29745	G29745-	G	-	1	1	B.1.177.46	0.000918
noncoding	29745	G29745-	G	-	1	1	B.1.177.51	0.004566
noncoding	29745	G29745-	G	-	1	1	B.1.177.53	0.002392
noncoding	29745	G29745-	G	-	1	1	B.1.177.65	0.000665
noncoding	29745	G29745-	G	-	1	1	B.1.177.79	0.002342
noncoding	29745	G29745C	G	C	1	1	B.1.177.8	0.000752
noncoding	29745	G29745T	G	T	1	1	B.1.177.81	0.000189
noncoding	29745	G29745-	G	-	1	1	B.1.177.82	0.000477
noncoding	29745	G29745A	G	A	1	1	B.1.177.82	0.000477
noncoding	29745	G29745-	G	-	1	1	B.1.177.9	0.001332
noncoding	29745	G29745-	G	-	1	1	B.1.178	0.02381
noncoding	29745	G29745-	G	-	1	1	B.1.180	0.05
noncoding	29745	G29745T	G	T	1	1	B.1.181	0.019608
noncoding	29745	G29745-	G	-	1	1	B.1.181	0.019608
noncoding	29745	G29745-	G	-	1	1	B.1.192	0.009259
noncoding	29745	G29745-	G	-	1	1	B.1.195	0.005025
noncoding	29745	G29745-	G	-	1	1	B.1.221.4	0.004167
noncoding	29745	G29745-	G	-	1	1	B.1.222	0.001692
noncoding	29745	G29745A	G	A	1	1	B.1.232	0.000537
noncoding	29745	G29745-	G	-	1	1	B.1.232	0.000537
noncoding	29745	G29745T	G	T	1	1	B.1.232	0.000537
noncoding	29745	G29745T	G	T	1	1	B.1.235	0.002519
noncoding	29745	G29745-	G	-	1	1	B.1.237	0.004975
noncoding	29745	G29745-	G	-	1	1	B.1.239	0.001221
noncoding	29745	G29745T	G	T	1	1	B.1.240	0.000216
noncoding	29745	G29745A	G	A	1	1	B.1.243	0.00007
noncoding	29745	G29745C	G	C	1	1	B.1.243	0.00007
noncoding	29745	G29745-	G	-	1	1	B.1.243.1	0.022222
noncoding	29745	G29745A	G	A	1	1	B.1.258	0.000067
noncoding	29745	G29745T	G	T	1	1	B.1.258.11	0.000396
noncoding	29745	G29745-	G	-	1	1	B.1.258.16	0.001637
noncoding	29745	G29745-	G	-	1	1	B.1.258.24	0.010753
noncoding	29745	G29745-	G	-	1	1	B.1.265	0.001271
noncoding	29745	G29745-	G	-	1	1	B.1.291	0.019231
noncoding	29745	G29745T	G	T	1	1	B.1.3	0.002618
noncoding	29745	G29745T	G	T	1	1	B.1.311	0.000275
noncoding	29745	G29745-	G	-	1	1	B.1.320	0.001245
noncoding	29745	G29745-	G	-	1	1	B.1.336	0.002439
noncoding	29745	G29745-	G	-	1	1	B.1.337	0.005587
noncoding	29745	G29745-	G	-	1	1	B.1.359	0.022727
noncoding	29745	G29745-	G	-	1	1	B.1.36.19	0.009259
noncoding	29745	G29745T	G	T	1	1	B.1.36.34	0.021277
noncoding	29745	G29745-	G	-	1	1	B.1.36.36	0.000602
noncoding	29745	G29745-	G	-	1	1	B.1.36.38	0.001642
noncoding	29745	G29745T	G	T	1	1	B.1.36.8	0.001
noncoding	29745	G29745-	G	-	1	1	B.1.362	0.001541
noncoding	29745	G29745T	G	T	1	1	B.1.367	0.000792
noncoding	29745	G29745-	G	-	1	1	B.1.375	0.00082
noncoding	29745	G29745-	G	-	1	1	B.1.380	0.006623
noncoding	29745	G29745T	G	T	1	1	B.1.389	0.001002
noncoding	29745	G29745-	G	-	1	1	B.1.390	0.010638
noncoding	29745	G29745A	G	A	1	1	B.1.416	0.001269
noncoding	29745	G29745C	G	C	1	1	B.1.416	0.001269
noncoding	29745	G29745T	G	T	1	1	B.1.416.1	0.001563
noncoding	29745	G29745T	G	T	1	1	B.1.422	0.000812
noncoding	29745	G29745-	G	-	1	1	B.1.424	0.008065
noncoding	29745	G29745-	G	-	1	1	B.1.428.3	0.012821
noncoding	29745	G29745-	G	-	1	1	B.1.433	0.003195
noncoding	29745	G29745-	G	-	1	1	B.1.443	0.004673
noncoding	29745	G29745C	G	C	1	1	B.1.466.1	0.007194
noncoding	29745	G29745T	G	T	1	1	B.1.470	0.001404
noncoding	29745	G29745T	G	T	1	1	B.1.473	0.019231
noncoding	29745	G29745-	G	-	1	1	B.1.478	0.011765
noncoding	29745	G29745-	G	-	1	1	B.1.493	0.025641
noncoding	29745	G29745-	G	-	1	1	B.1.499	0.00105
noncoding	29745	G29745-	G	-	1	1	B.1.508	0.025641
noncoding	29745	G29745-	G	-	1	1	B.1.524	0.001406
noncoding	29745	G29745T	G	T	1	1	B.1.525	0.000113
noncoding	29745	G29745C	G	C	1	1	B.1.525	0.000113
noncoding	29745	G29745V	G	V	1	1	B.1.525	0.000113
noncoding	29745	G29745-	G	-	1	1	B.1.530	0.007143
noncoding	29745	G29745A	G	A	1	1	B.1.545	0.014493
noncoding	29745	G29745-	G	-	1	1	B.1.547	0.02439
noncoding	29745	G29745-	G	-	1	1	B.1.558	0.004566
noncoding	29745	G29745-	G	-	1	1	B.1.564	0.000426
noncoding	29745	G29745T	G	T	1	1	B.1.564	0.000426
noncoding	29745	G29745-	G	-	1	1	B.1.564.1	0.001577
noncoding	29745	G29745C	G	C	1	1	B.1.577	0.000687
noncoding	29745	G29745-	G	-	1	1	B.1.580	0.004065
noncoding	29745	G29745C	G	C	1	1	B.1.595	0.000261
noncoding	29745	G29745T	G	T	1	1	B.1.595	0.000261
noncoding	29745	G29745-	G	-	1	1	B.1.595.1	0.005848
noncoding	29745	G29745A	G	A	1	1	B.1.596	0.000087
noncoding	29745	G29745-	G	-	1	1	B.1.597	0.00463
noncoding	29745	G29745-	G	-	1	1	B.1.6	0.017241
noncoding	29745	G29745T	G	T	1	1	B.1.600	0.005848
noncoding	29745	G29745-	G	-	1	1	B.1.600	0.005848
noncoding	29745	G29745-	G	-	1	1	B.1.617.3	0.002985
noncoding	29745	G29745T	G	T	1	1	B.1.619	0.000871
noncoding	29745	G29745T	G	T	1	1	B.1.619.1	0.000641
noncoding	29745	G29745-	G	-	1	1	B.1.621.1	0.000506
noncoding	29745	G29745T	G	T	1	1	B.1.625	0.002353
noncoding	29745	G29745-	G	-	1	1	B.1.631	0.003367
noncoding	29745	G29745-	G	-	1	1	B.1.633	0.041667
noncoding	29745	G29745C	G	C	1	1	B.1.637	0.000073
noncoding	29745	G29745-	G	-	1	1	B.1.81	0.021277
noncoding	29745	G29745T	G	T	1	1	B.1.97	0.025641
noncoding	29745	G29745-	G	-	1	1	B.10	0.008264
noncoding	29745	G29745-	G	-	1	1	B.3	0.000831
noncoding	29745	G29745-	G	-	1	1	B.31	0.003731
noncoding	29745	G29745-	G	-	1	1	B.4.1	0.018868
noncoding	29745	G29745T	G	T	1	1	B.4.1	0.018868
noncoding	29745	G29745-	G	-	1	1	B.4.2	0.066667
noncoding	29745	G29745C	G	C	1	1	B.40	0.000364
noncoding	29745	G29745T	G	T	1	1	B.55	0.00295
noncoding	29745	G29745-	G	-	1	1	B.55	0.00295
noncoding	29745	G29745-	G	-	1	1	B.58	0.010204
noncoding	29745	G29745A	G	A	1	1	B.6	0.00091
noncoding	29745	G29745T	G	T	1	1	B.6	0.00091
noncoding	29745	G29745-	G	-	1	1	B.6	0.00091
noncoding	29745	G29745-	G	-	1	1	B.6.6	0.000889
noncoding	29745	G29745C	G	C	1	1	C.1	0.002392
noncoding	29745	G29745-	G	-	1	1	C.1	0.002392
noncoding	29745	G29745-	G	-	1	1	C.1.2	0.004255
noncoding	29745	G29745T	G	T	1	1	C.16	0.00106
noncoding	29745	G29745-	G	-	1	1	C.18	0.002591
noncoding	29745	G29745T	G	T	1	1	C.2	0.016129
noncoding	29745	G29745-	G	-	1	1	C.35	0.000774
noncoding	29745	G29745T	G	T	1	1	C.36	0.000911
noncoding	29745	G29745-	G	-	1	1	C.36	0.000911
noncoding	29745	G29745T	G	T	1	1	C.36.3	0.000567
noncoding	29745	G29745T	G	T	1	1	D.2	0.000075
noncoding	29745	G29745-	G	-	1	1	L.3	0.003546
noncoding	29745	G29745-	G	-	1	1	N.6	0.007092
noncoding	29745	G29745A	G	A	1	1	P.1.1	0.000318
noncoding	29745	G29745-	G	-	1	1	P.1.11	0.010204
noncoding	29745	G29745C	G	C	1	1	P.1.14	0.000048
noncoding	29745	G29745T	G	T	1	1	P.1.15	0.000232
noncoding	29745	G29745T	G	T	1	1	P.1.16	0.000374
noncoding	29745	G29745-	G	-	1	1	P.1.2	0.001156
noncoding	29745	G29745T	G	T	1	1	P.1.2	0.001156
noncoding	29745	G29745A	G	A	1	1	P.1.2	0.001156
noncoding	29745	G29745A	G	A	1	1	P.2	0.000187
noncoding	29745	G29745T	G	T	1	1	P.3	0.001595
noncoding	29745	G29745-	G	-	1	1	P.7	0.004367
noncoding	29745	G29745T	G	T	1	1	P.7	0.004367
noncoding	29745	G29745T	G	T	1	1	Q.1	0.000126
noncoding	29745	G29745-	G	-	1	1	Q.3	0.000145
noncoding	29745	G29745-	G	-	1	1	Q.7	0.001111
noncoding	29745	G29745T	G	T	1	1	Q.8	0.000165
noncoding	29745	G29745C	G	C	1	1	Q.8	0.000165
noncoding	29745	G29745A	G	A	1	1	R.1	0.00009
noncoding	29745	G29745-	G	-	1	1	U.3	0.003861
noncoding	29745	G29745-	G	-	1	1	W.1	0.008696
noncoding	29745	G29745-	G	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.