CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29744

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29744	G29744-		noncoding	G	-	34188	34188	1	29744-29744
noncoding	29744	G29744A		noncoding	G	A	9799	9799	1	29744-29744
noncoding	29744	G29744T		noncoding	G	T	3203	3203	1	29744-29744
noncoding	29744	G29744C		noncoding	G	C	77	77	1	29744-29744
noncoding	29744	G29744V		noncoding	G	V	1	1	1	29744-29744

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29744	G29744-	G	-	34188	34188	All	0.006539
noncoding	29744	G29744A	G	A	9799	9799	All	0.001874
noncoding	29744	G29744-	G	-	9388	9388	B.1.526	0.22066
noncoding	29744	G29744-	G	-	5399	5399	B.1.1.7	0.004833
noncoding	29744	G29744-	G	-	3716	3716	B.1.525	0.420505
noncoding	29744	G29744A	G	A	3323	3323	AY.75.1	0.599171
noncoding	29744	G29744T	G	T	3203	3203	All	0.000613
noncoding	29744	G29744-	G	-	1950	1950	AY.4	0.003035
noncoding	29744	G29744-	G	-	1762	1762	B.1.1.311	0.631089
noncoding	29744	G29744T	G	T	1127	1127	B.1.1.7	0.001009
noncoding	29744	G29744A	G	A	1055	1055	AY.91	0.770636
noncoding	29744	G29744-	G	-	831	831	AY.38	0.414878
noncoding	29744	G29744A	G	A	730	730	AY.16	0.277145
noncoding	29744	G29744A	G	A	585	585	B.1.1	0.010612
noncoding	29744	G29744A	G	A	583	583	AY.4	0.000907
noncoding	29744	G29744A	G	A	540	540	B.1.1.7	0.000483
noncoding	29744	G29744-	G	-	534	534	B.1.617.2	0.002011
noncoding	29744	G29744-	G	-	530	530	B.1.429	0.01247
noncoding	29744	G29744A	G	A	431	431	AY.103	0.002676
noncoding	29744	G29744-	G	-	420	420	B.1.2	0.003698
noncoding	29744	G29744-	G	-	407	407	B.1.279	0.20904
noncoding	29744	G29744-	G	-	405	405	B.1	0.00371
noncoding	29744	G29744-	G	-	396	396	B.1.177	0.005214
noncoding	29744	G29744A	G	A	374	374	AY.8	0.226667
noncoding	29744	G29744-	G	-	370	370	B.1.177.81	0.070049
noncoding	29744	G29744-	G	-	365	365	B.1.351.2	0.110439
noncoding	29744	G29744-	G	-	310	310	P.1	0.004884
noncoding	29744	G29744-	G	-	307	307	AY.39	0.007586
noncoding	29744	G29744T	G	T	293	293	AY.4	0.000456
noncoding	29744	G29744-	G	-	288	288	AY.5	0.005947
noncoding	29744	G29744-	G	-	286	286	B.1.258.11	0.113357
noncoding	29744	G29744-	G	-	279	279	AY.25	0.001678
noncoding	29744	G29744A	G	A	247	247	B.1.617.2	0.00093
noncoding	29744	G29744A	G	A	237	237	AY.91.1	0.963415
noncoding	29744	G29744-	G	-	226	226	B.1.1	0.0041
noncoding	29744	G29744-	G	-	216	216	B.1.221	0.015343
noncoding	29744	G29744-	G	-	201	201	B.1.160	0.006269
noncoding	29744	G29744-	G	-	187	187	B.1.1.519	0.007426
noncoding	29744	G29744-	G	-	186	186	AY.103	0.001155
noncoding	29744	G29744-	G	-	176	176	B.1.351	0.005232
noncoding	29744	G29744T	G	T	168	168	AY.44	0.001023
noncoding	29744	G29744T	G	T	165	165	B.1.617.2	0.000621
noncoding	29744	G29744-	G	-	163	163	B.1.626	0.931429
noncoding	29744	G29744-	G	-	160	160	AY.43	0.000709
noncoding	29744	G29744-	G	-	149	149	B.1.621	0.013189
noncoding	29744	G29744-	G	-	145	145	AY.46.6	0.01047
noncoding	29744	G29744-	G	-	145	145	D.5	0.721393
noncoding	29744	G29744-	G	-	143	143	B.1.427	0.007221
noncoding	29744	G29744-	G	-	133	133	B.1.258	0.008851
noncoding	29744	G29744A	G	A	131	131	B.1.2	0.001154
noncoding	29744	G29744A	G	A	128	128	B.1.1.406	0.831169
noncoding	29744	G29744T	G	T	128	128	P.1	0.002017
noncoding	29744	G29744T	G	T	125	125	B.1.325	0.862069
noncoding	29744	G29744-	G	-	115	115	AY.120	0.004276
noncoding	29744	G29744-	G	-	113	113	AY.44	0.000688
noncoding	29744	G29744T	G	T	111	111	AY.106	0.037173
noncoding	29744	G29744-	G	-	104	104	B.1.1.294	0.131646
noncoding	29744	G29744-	G	-	102	102	AY.42	0.004103
noncoding	29744	G29744-	G	-	100	100	B.1.1.63	0.03858
noncoding	29744	G29744-	G	-	96	96	AY.73	0.063872
noncoding	29744	G29744-	G	-	93	93	AY.3	0.000925
noncoding	29744	G29744-	G	-	92	92	AY.47	0.002862
noncoding	29744	G29744A	G	A	90	90	AY.43	0.000399
noncoding	29744	G29744-	G	-	89	89	R.1	0.008011
noncoding	29744	G29744-	G	-	82	82	B.1.243	0.005706
noncoding	29744	G29744C	G	C	77	77	All	0.000015
noncoding	29744	G29744A	G	A	77	77	B.1	0.000705
noncoding	29744	G29744T	G	T	73	73	AY.43	0.000323
noncoding	29744	G29744A	G	A	67	67	B.1.240	0.014443
noncoding	29744	G29744-	G	-	67	67	B.1.596	0.005838
noncoding	29744	G29744-	G	-	65	65	B.1.561	0.025804
noncoding	29744	G29744T	G	T	63	63	B.1	0.000577
noncoding	29744	G29744-	G	-	61	61	D.2	0.004578
noncoding	29744	G29744T	G	T	60	60	B.1.2	0.000528
noncoding	29744	G29744A	G	A	58	58	AY.102	0.001538
noncoding	29744	G29744A	G	A	57	57	AY.113	0.008116
noncoding	29744	G29744-	G	-	57	57	C.16	0.060445
noncoding	29744	G29744-	G	-	56	56	C.37	0.0065
noncoding	29744	G29744A	G	A	54	54	AY.44	0.000329
noncoding	29744	G29744-	G	-	54	54	B.1.241	0.043831
noncoding	29744	G29744A	G	A	51	51	AY.67	0.023677
noncoding	29744	G29744T	G	T	50	50	AY.102	0.001326
noncoding	29744	G29744-	G	-	50	50	AY.20	0.001943
noncoding	29744	G29744T	G	T	50	50	B.1.139	0.036657
noncoding	29744	G29744-	G	-	46	46	B.1.240	0.009916
noncoding	29744	G29744-	G	-	44	44	B.1.177.24	0.056995
noncoding	29744	G29744-	G	-	43	43	AY.102	0.00114
noncoding	29744	G29744-	G	-	43	43	P.1.14	0.002055
noncoding	29744	G29744A	G	A	42	42	AY.25	0.000253
noncoding	29744	G29744T	G	T	42	42	AY.26	0.001189
noncoding	29744	G29744-	G	-	42	42	P.1.16	0.015713
noncoding	29744	G29744A	G	A	41	41	AY.75	0.002297
noncoding	29744	G29744-	G	-	41	41	B.1.177.60	0.008956
noncoding	29744	G29744A	G	A	38	38	AY.119	0.001342
noncoding	29744	G29744T	G	T	38	38	B.1.177	0.0005
noncoding	29744	G29744T	G	T	38	38	B.1.258	0.002529
noncoding	29744	G29744-	G	-	38	38	B.1.637	0.002777
noncoding	29744	G29744-	G	-	38	38	M.1	0.883721
noncoding	29744	G29744A	G	A	37	37	AY.13	0.005956
noncoding	29744	G29744-	G	-	36	36	B.1.595	0.009395
noncoding	29744	G29744T	G	T	35	35	AY.25	0.000211
noncoding	29744	G29744-	G	-	35	35	AY.29	0.000552
noncoding	29744	G29744-	G	-	34	34	AY.119	0.0012
noncoding	29744	G29744-	G	-	34	34	AY.26	0.000963
noncoding	29744	G29744-	G	-	34	34	B.1.304	0.790698
noncoding	29744	G29744-	G	-	33	33	B.1.258.17	0.003431
noncoding	29744	G29744-	G	-	32	32	B.1.36.18	0.013445
noncoding	29744	G29744A	G	A	32	32	P.1	0.000504
noncoding	29744	G29744A	G	A	31	31	AY.46	0.003226
noncoding	29744	G29744-	G	-	30	30	B.1.1.434	0.010457
noncoding	29744	G29744-	G	-	29	29	AY.100	0.001334
noncoding	29744	G29744T	G	T	29	29	AY.103	0.00018
noncoding	29744	G29744-	G	-	29	29	AY.4.2	0.000629
noncoding	29744	G29744-	G	-	29	29	B.1.619	0.025261
noncoding	29744	G29744-	G	-	28	28	B.1.623	0.015021
noncoding	29744	G29744-	G	-	27	27	B.1.1.37	0.005207
noncoding	29744	G29744-	G	-	27	27	B.1.346	0.035387
noncoding	29744	G29744T	G	T	27	27	B.1.36	0.003939
noncoding	29744	G29744A	G	A	26	26	AY.47	0.000809
noncoding	29744	G29744-	G	-	26	26	AY.6	0.001069
noncoding	29744	G29744T	G	T	26	26	AY.94	0.01151
noncoding	29744	G29744A	G	A	26	26	AZ.1	0.02255
noncoding	29744	G29744A	G	A	25	25	AY.114	0.005778
noncoding	29744	G29744T	G	T	24	24	AY.113	0.003417
noncoding	29744	G29744A	G	A	24	24	AY.39	0.000593
noncoding	29744	G29744C	G	C	24	24	B.1.427	0.001212
noncoding	29744	G29744A	G	A	23	23	AY.45	0.002799
noncoding	29744	G29744A	G	A	23	23	B.1.1.222	0.004692
noncoding	29744	G29744A	G	A	22	22	AY.5	0.000454
noncoding	29744	G29744-	G	-	22	22	B.1.1.222	0.004488
noncoding	29744	G29744-	G	-	22	22	B.1.1.368	0.067901
noncoding	29744	G29744T	G	T	22	22	B.1.429	0.000518
noncoding	29744	G29744A	G	A	21	21	AY.111	0.003846
noncoding	29744	G29744-	G	-	21	21	B.1.1.174	0.070946
noncoding	29744	G29744-	G	-	21	21	B.1.1.265	0.066246
noncoding	29744	G29744-	G	-	21	21	B.1.1.39	0.010703
noncoding	29744	G29744-	G	-	21	21	B.1.305	0.045161
noncoding	29744	G29744-	G	-	20	20	B.1.311	0.005491
noncoding	29744	G29744A	G	A	20	20	B.1.36.18	0.008403
noncoding	29744	G29744-	G	-	20	20	B.1.404	0.026042
noncoding	29744	G29744-	G	-	20	20	B.1.576	0.018132
noncoding	29744	G29744A	G	A	20	20	B.1.582	0.009814
noncoding	29744	G29744-	G	-	20	20	B.1.588	0.018198
noncoding	29744	G29744A	G	A	19	19	AY.3	0.000189
noncoding	29744	G29744-	G	-	19	19	AY.45	0.002312
noncoding	29744	G29744-	G	-	19	19	AY.92	0.005458
noncoding	29744	G29744-	G	-	18	18	AY.118	0.001128
noncoding	29744	G29744-	G	-	18	18	B.1.1.172	0.327273
noncoding	29744	G29744-	G	-	18	18	B.1.1.307	0.04557
noncoding	29744	G29744-	G	-	18	18	B.1.177.86	0.003302
noncoding	29744	G29744-	G	-	18	18	B.1.289	0.047872
noncoding	29744	G29744-	G	-	18	18	B.1.556	0.135338
noncoding	29744	G29744-	G	-	18	18	B.1.562	0.333333
noncoding	29744	G29744-	G	-	18	18	B.1.575	0.005461
noncoding	29744	G29744-	G	-	18	18	P.2	0.003359
noncoding	29744	G29744T	G	T	17	17	AY.119	0.0006
noncoding	29744	G29744-	G	-	17	17	B.1.1.153	0.01862
noncoding	29744	G29744-	G	-	17	17	B.1.1.28	0.005291
noncoding	29744	G29744-	G	-	17	17	B.1.1.33	0.007155
noncoding	29744	G29744A	G	A	16	16	AY.26	0.000453
noncoding	29744	G29744A	G	A	16	16	AY.5.3	0.005398
noncoding	29744	G29744-	G	-	16	16	B.1.258.14	0.015686
noncoding	29744	G29744T	G	T	16	16	B.1.351	0.000476
noncoding	29744	G29744A	G	A	15	15	AY.6	0.000617
noncoding	29744	G29744-	G	-	15	15	B.1.1.214	0.000832
noncoding	29744	G29744-	G	-	15	15	B.1.36.1	0.017104
noncoding	29744	G29744-	G	-	15	15	B.1.36.29	0.00776
noncoding	29744	G29744A	G	A	15	15	R.1	0.00135
noncoding	29744	G29744-	G	-	14	14	AY.9	0.000946
noncoding	29744	G29744-	G	-	14	14	AY.9.2	0.000514
noncoding	29744	G29744-	G	-	14	14	B.1.177.7	0.002308
noncoding	29744	G29744A	G	A	14	14	B.1.361	0.018041
noncoding	29744	G29744-	G	-	14	14	B.1.497	0.004407
noncoding	29744	G29744T	G	T	13	13	AY.100	0.000598
noncoding	29744	G29744T	G	T	13	13	AY.39	0.000321
noncoding	29744	G29744-	G	-	13	13	AY.61	0.001362
noncoding	29744	G29744-	G	-	13	13	AY.74	0.001503
noncoding	29744	G29744-	G	-	13	13	AY.75.1	0.002344
noncoding	29744	G29744-	G	-	13	13	AY.98.1	0.00063
noncoding	29744	G29744-	G	-	13	13	B.1.1.25	0.007391
noncoding	29744	G29744-	G	-	13	13	B.1.36	0.001897
noncoding	29744	G29744-	G	-	13	13	B.1.416	0.016497
noncoding	29744	G29744-	G	-	13	13	B.1.581	0.122642
noncoding	29744	G29744-	G	-	13	13	P.1.15	0.00302
noncoding	29744	G29744T	G	T	12	12	AY.3	0.000119
noncoding	29744	G29744T	G	T	12	12	B.1.1	0.000218
noncoding	29744	G29744-	G	-	12	12	B.1.1.306	0.005261
noncoding	29744	G29744-	G	-	12	12	B.1.1.317	0.00494
noncoding	29744	G29744-	G	-	12	12	B.1.1.416	0.01086
noncoding	29744	G29744A	G	A	12	12	B.1.177	0.000158
noncoding	29744	G29744-	G	-	12	12	B.1.177.75	0.012487
noncoding	29744	G29744T	G	T	12	12	P.1.7	0.003831
noncoding	29744	G29744-	G	-	11	11	A.1	0.0031
noncoding	29744	G29744-	G	-	11	11	AY.117	0.00093
noncoding	29744	G29744T	G	T	11	11	AY.118	0.000689
noncoding	29744	G29744-	G	-	11	11	AY.23	0.000767
noncoding	29744	G29744A	G	A	11	11	AY.29.1	0.002426
noncoding	29744	G29744T	G	T	11	11	AY.5	0.000227
noncoding	29744	G29744-	G	-	11	11	AY.75	0.000616
noncoding	29744	G29744-	G	-	11	11	AY.99.2	0.001014
noncoding	29744	G29744-	G	-	11	11	B	0.001406
noncoding	29744	G29744T	G	T	11	11	B.1.1.432	0.013924
noncoding	29744	G29744C	G	C	11	11	B.1.1.7	0.00001
noncoding	29744	G29744-	G	-	11	11	B.1.177.6	0.010742
noncoding	29744	G29744-	G	-	11	11	B.1.177.62	0.013111
noncoding	29744	G29744-	G	-	11	11	B.1.234	0.001451
noncoding	29744	G29744A	G	A	11	11	B.1.36.29	0.005691
noncoding	29744	G29744-	G	-	10	10	AY.114	0.002311
noncoding	29744	G29744-	G	-	10	10	AY.46.4	0.001645
noncoding	29744	G29744-	G	-	10	10	B.1.1.397	0.022523
noncoding	29744	G29744-	G	-	10	10	B.1.400	0.00429
noncoding	29744	G29744-	G	-	10	10	B.1.599	0.036496
noncoding	29744	G29744A	G	A	10	10	B.1.621	0.000885
noncoding	29744	G29744T	G	T	10	10	P.1.14	0.000478
noncoding	29744	G29744-	G	-	10	10	P.1.4	0.009766
noncoding	29744	G29744-	G	-	9	9	AY.12	0.002845
noncoding	29744	G29744-	G	-	9	9	AY.2	0.003205
noncoding	29744	G29744A	G	A	9	9	AY.29	0.000142
noncoding	29744	G29744-	G	-	9	9	AY.34.1	0.004589
noncoding	29744	G29744T	G	T	9	9	AY.4.2	0.000195
noncoding	29744	G29744A	G	A	9	9	AY.42	0.000362
noncoding	29744	G29744-	G	-	9	9	AY.46	0.000937
noncoding	29744	G29744-	G	-	9	9	AY.46.5	0.001786
noncoding	29744	G29744-	G	-	9	9	AY.54	0.000858
noncoding	29744	G29744-	G	-	9	9	AY.85	0.003845
noncoding	29744	G29744A	G	A	9	9	B.1.1.317	0.003705
noncoding	29744	G29744-	G	-	9	9	B.1.149	0.030822
noncoding	29744	G29744-	G	-	9	9	B.1.160.14	0.019068
noncoding	29744	G29744-	G	-	9	9	B.1.177.50	0.042254
noncoding	29744	G29744-	G	-	9	9	B.1.258.3	0.015075
noncoding	29744	G29744-	G	-	9	9	B.1.398	0.026786
noncoding	29744	G29744-	G	-	9	9	B.1.422	0.007311
noncoding	29744	G29744-	G	-	9	9	P.1.7	0.002874
noncoding	29744	G29744-	G	-	8	8	A	0.003096
noncoding	29744	G29744A	G	A	8	8	AY.118	0.000501
noncoding	29744	G29744-	G	-	8	8	AY.13	0.001288
noncoding	29744	G29744A	G	A	8	8	AY.3.1	0.000682
noncoding	29744	G29744-	G	-	8	8	AY.34	0.000776
noncoding	29744	G29744A	G	A	8	8	AY.61	0.000838
noncoding	29744	G29744T	G	T	8	8	AY.9.2	0.000294
noncoding	29744	G29744-	G	-	8	8	B.1.1.1	0.002614
noncoding	29744	G29744A	G	A	8	8	B.1.1.216	0.007124
noncoding	29744	G29744-	G	-	8	8	B.1.1.316	0.007401
noncoding	29744	G29744T	G	T	8	8	B.1.1.519	0.000318
noncoding	29744	G29744-	G	-	8	8	B.1.36.22	0.009662
noncoding	29744	G29744A	G	A	8	8	B.1.429	0.000188
noncoding	29744	G29744-	G	-	8	8	B.1.466.2	0.00313
noncoding	29744	G29744T	G	T	8	8	B.1.526	0.000188
noncoding	29744	G29744-	G	-	8	8	B.1.93	0.00747
noncoding	29744	G29744-	G	-	8	8	C.36.3	0.004538
noncoding	29744	G29744-	G	-	8	8	P.1.1	0.002541
noncoding	29744	G29744-	G	-	8	8	Q.4	0.003638
noncoding	29744	G29744T	G	T	7	7	AY.120	0.00026
noncoding	29744	G29744T	G	T	7	7	AY.14	0.000616
noncoding	29744	G29744A	G	A	7	7	AY.34	0.000679
noncoding	29744	G29744A	G	A	7	7	AY.95	0.005327
noncoding	29744	G29744T	G	T	7	7	AY.98.1	0.000339
noncoding	29744	G29744T	G	T	7	7	B.1.1.312	0.013384
noncoding	29744	G29744A	G	A	7	7	B.1.1.519	0.000278
noncoding	29744	G29744-	G	-	7	7	B.1.1.526	0.024823
noncoding	29744	G29744-	G	-	7	7	B.1.160.33	0.030973
noncoding	29744	G29744-	G	-	7	7	B.1.177.73	0.003964
noncoding	29744	G29744T	G	T	7	7	B.1.243	0.000487
noncoding	29744	G29744C	G	C	7	7	B.1.258.17	0.000728
noncoding	29744	G29744T	G	T	7	7	B.1.36.29	0.003621
noncoding	29744	G29744T	G	T	7	7	B.1.471	0.019126
noncoding	29744	G29744T	G	T	7	7	B.1.525	0.000792
noncoding	29744	G29744A	G	A	7	7	B.1.637	0.000512
noncoding	29744	G29744-	G	-	6	6	AY.14	0.000528
noncoding	29744	G29744A	G	A	6	6	AY.20	0.000233
noncoding	29744	G29744A	G	A	6	6	AY.23	0.000418
noncoding	29744	G29744T	G	T	6	6	AY.29	0.000095
noncoding	29744	G29744-	G	-	6	6	AY.33	0.000401
noncoding	29744	G29744A	G	A	6	6	AY.33	0.000401
noncoding	29744	G29744-	G	-	6	6	AY.35	0.001398
noncoding	29744	G29744A	G	A	6	6	AY.4.2	0.00013
noncoding	29744	G29744A	G	A	6	6	AY.4.5	0.000645
noncoding	29744	G29744A	G	A	6	6	AY.55	0.005505
noncoding	29744	G29744T	G	T	6	6	AY.61	0.000629
noncoding	29744	G29744-	G	-	6	6	AY.65	0.003198
noncoding	29744	G29744T	G	T	6	6	AY.79	0.007264
noncoding	29744	G29744T	G	T	6	6	AY.9	0.000406
noncoding	29744	G29744-	G	-	6	6	AY.9.1	0.000502
noncoding	29744	G29744T	G	T	6	6	B.1.1.25	0.003411
noncoding	29744	G29744T	G	T	6	6	B.1.1.306	0.00263
noncoding	29744	G29744-	G	-	6	6	B.1.1.318	0.001811
noncoding	29744	G29744A	G	A	6	6	B.1.1.414	0.857143
noncoding	29744	G29744-	G	-	6	6	B.1.110.3	0.00431
noncoding	29744	G29744-	G	-	6	6	B.1.177.12	0.00091
noncoding	29744	G29744-	G	-	6	6	B.1.177.87	0.004367
noncoding	29744	G29744A	G	A	6	6	B.1.351	0.000178
noncoding	29744	G29744-	G	-	6	6	B.1.389	0.006012
noncoding	29744	G29744-	G	-	6	6	B.1.517	0.002562
noncoding	29744	G29744A	G	A	6	6	B.1.525	0.000679
noncoding	29744	G29744-	G	-	6	6	B.39	0.013986
noncoding	29744	G29744-	G	-	6	6	B.40	0.002186
noncoding	29744	G29744-	G	-	6	6	N.4	0.025532
noncoding	29744	G29744-	G	-	6	6	N.5	0.010601
noncoding	29744	G29744-	G	-	6	6	Q.2	0.003681
noncoding	29744	G29744A	G	A	5	5	AY.101	0.002452
noncoding	29744	G29744A	G	A	5	5	AY.105	0.003215
noncoding	29744	G29744A	G	A	5	5	AY.109	0.003698
noncoding	29744	G29744T	G	T	5	5	AY.117	0.000423
noncoding	29744	G29744A	G	A	5	5	AY.121	0.000677
noncoding	29744	G29744A	G	A	5	5	AY.18	0.050505
noncoding	29744	G29744T	G	T	5	5	AY.20	0.000194
noncoding	29744	G29744T	G	T	5	5	AY.33	0.000334
noncoding	29744	G29744-	G	-	5	5	AY.36	0.000741
noncoding	29744	G29744A	G	A	5	5	AY.37	0.00158
noncoding	29744	G29744T	G	T	5	5	AY.45	0.000608
noncoding	29744	G29744A	G	A	5	5	AY.58	0.004537
noncoding	29744	G29744A	G	A	5	5	AY.62	0.002179
noncoding	29744	G29744A	G	A	5	5	AY.65	0.002665
noncoding	29744	G29744T	G	T	5	5	AY.75	0.00028
noncoding	29744	G29744-	G	-	5	5	B.1.1.189	0.007564
noncoding	29744	G29744-	G	-	5	5	B.1.1.192	0.011547
noncoding	29744	G29744-	G	-	5	5	B.1.1.198	0.007342
noncoding	29744	G29744A	G	A	5	5	B.1.1.28	0.001556
noncoding	29744	G29744T	G	T	5	5	B.1.1.284	0.000537
noncoding	29744	G29744-	G	-	5	5	B.1.1.288	0.009579
noncoding	29744	G29744-	G	-	5	5	B.1.1.369	0.002231
noncoding	29744	G29744-	G	-	5	5	B.1.177.32	0.006748
noncoding	29744	G29744-	G	-	5	5	B.1.210	0.010661
noncoding	29744	G29744T	G	T	5	5	B.1.258.17	0.00052
noncoding	29744	G29744-	G	-	5	5	B.1.416.1	0.007812
noncoding	29744	G29744A	G	A	5	5	B.1.595	0.001305
noncoding	29744	G29744T	G	T	5	5	B.1.596	0.000436
noncoding	29744	G29744-	G	-	5	5	B.1.609	0.002397
noncoding	29744	G29744-	G	-	5	5	P.1.12	0.00242
noncoding	29744	G29744-	G	-	5	5	P.1.17	0.000809
noncoding	29744	G29744-	G	-	5	5	P.5	0.068493
noncoding	29744	G29744-	G	-	4	4	A.2.5	0.001996
noncoding	29744	G29744-	G	-	4	4	AY.109	0.002959
noncoding	29744	G29744A	G	A	4	4	AY.117	0.000338
noncoding	29744	G29744T	G	T	4	4	AY.23	0.000279
noncoding	29744	G29744-	G	-	4	4	AY.30	0.001583
noncoding	29744	G29744T	G	T	4	4	AY.32	0.00213
noncoding	29744	G29744A	G	A	4	4	AY.46.6	0.000289
noncoding	29744	G29744A	G	A	4	4	AY.59	0.002119
noncoding	29744	G29744-	G	-	4	4	AY.59	0.002119
noncoding	29744	G29744T	G	T	4	4	AY.72	0.005442
noncoding	29744	G29744-	G	-	4	4	AY.84	0.00175
noncoding	29744	G29744A	G	A	4	4	AY.9.2	0.000147
noncoding	29744	G29744A	G	A	4	4	AY.99.2	0.000369
noncoding	29744	G29744T	G	T	4	4	B.1.1.214	0.000222
noncoding	29744	G29744-	G	-	4	4	B.1.1.312	0.007648
noncoding	29744	G29744T	G	T	4	4	B.1.1.33	0.001684
noncoding	29744	G29744-	G	-	4	4	B.1.1.337	0.014388
noncoding	29744	G29744-	G	-	4	4	B.1.1.385	0.017857
noncoding	29744	G29744-	G	-	4	4	B.1.1.41	0.025316
noncoding	29744	G29744-	G	-	4	4	B.1.1.46	0.017467
noncoding	29744	G29744-	G	-	4	4	B.1.1.462	0.034483
noncoding	29744	G29744-	G	-	4	4	B.1.1.464	0.005891
noncoding	29744	G29744-	G	-	4	4	B.1.177.18	0.00464
noncoding	29744	G29744-	G	-	4	4	B.1.177.42	0.003578
noncoding	29744	G29744-	G	-	4	4	B.1.177.56	0.00267
noncoding	29744	G29744-	G	-	4	4	B.1.351.3	0.003506
noncoding	29744	G29744-	G	-	4	4	B.1.369	0.001141
noncoding	29744	G29744-	G	-	4	4	B.1.399	0.007737
noncoding	29744	G29744-	G	-	4	4	B.1.438.1	0.000429
noncoding	29744	G29744-	G	-	4	4	B.1.469	0.01444
noncoding	29744	G29744-	G	-	4	4	B.1.568	0.004444
noncoding	29744	G29744-	G	-	4	4	B.1.582	0.001963
noncoding	29744	G29744T	G	T	4	4	C.36.3	0.002269
noncoding	29744	G29744-	G	-	4	4	P.1.10	0.001078
noncoding	29744	G29744T	G	T	4	4	P.4	0.015209
noncoding	29744	G29744A	G	A	4	4	Q.4	0.001819
noncoding	29744	G29744-	G	-	4	4	Q.8	0.00066
noncoding	29744	G29744T	G	T	3	3	AY.1	0.001187
noncoding	29744	G29744A	G	A	3	3	AY.100	0.000138
noncoding	29744	G29744A	G	A	3	3	AY.107	0.001398
noncoding	29744	G29744-	G	-	3	3	AY.110	0.000338
noncoding	29744	G29744-	G	-	3	3	AY.111	0.000549
noncoding	29744	G29744A	G	A	3	3	AY.16.1	0.00141
noncoding	29744	G29744-	G	-	3	3	AY.27	0.000194
noncoding	29744	G29744-	G	-	3	3	AY.3.1	0.000256
noncoding	29744	G29744A	G	A	3	3	AY.30	0.001187
noncoding	29744	G29744-	G	-	3	3	AY.32	0.001597
noncoding	29744	G29744-	G	-	3	3	AY.39.1	0.000119
noncoding	29744	G29744-	G	-	3	3	AY.40	0.002893
noncoding	29744	G29744T	G	T	3	3	AY.42	0.000121
noncoding	29744	G29744-	G	-	3	3	AY.5.3	0.001012
noncoding	29744	G29744T	G	T	3	3	AY.5.4	0.00083
noncoding	29744	G29744-	G	-	3	3	AY.51	0.002727
noncoding	29744	G29744T	G	T	3	3	AY.54	0.000286
noncoding	29744	G29744-	G	-	3	3	AY.62	0.001307
noncoding	29744	G29744-	G	-	3	3	AY.7	0.000588
noncoding	29744	G29744A	G	A	3	3	AY.70	0.000626
noncoding	29744	G29744T	G	T	3	3	AY.75.1	0.000541
noncoding	29744	G29744A	G	A	3	3	AY.79	0.003632
noncoding	29744	G29744A	G	A	3	3	AY.85	0.001282
noncoding	29744	G29744A	G	A	3	3	AY.92	0.000862
noncoding	29744	G29744T	G	T	3	3	AY.98	0.000237
noncoding	29744	G29744-	G	-	3	3	AY.98	0.000237
noncoding	29744	G29744C	G	C	3	3	B.1	0.000027
noncoding	29744	G29744-	G	-	3	3	B.1.1.135	0.014085
noncoding	29744	G29744-	G	-	3	3	B.1.1.228	0.009146
noncoding	29744	G29744-	G	-	3	3	B.1.1.236	0.02069
noncoding	29744	G29744T	G	T	3	3	B.1.1.243	0.012245
noncoding	29744	G29744-	G	-	3	3	B.1.1.277	0.002276
noncoding	29744	G29744-	G	-	3	3	B.1.1.284	0.000322
noncoding	29744	G29744-	G	-	3	3	B.1.1.375	0.035714
noncoding	29744	G29744-	G	-	3	3	B.1.1.401	0.2
noncoding	29744	G29744-	G	-	3	3	B.1.1.428	0.028302
noncoding	29744	G29744-	G	-	3	3	B.1.1.518	0.018987
noncoding	29744	G29744T	G	T	3	3	B.1.1.526	0.010638
noncoding	29744	G29744-	G	-	3	3	B.1.1.57	0.034483
noncoding	29744	G29744-	G	-	3	3	B.1.1.70	0.001023
noncoding	29744	G29744-	G	-	3	3	B.1.145	0.157895
noncoding	29744	G29744T	G	T	3	3	B.1.160.30	0.008929
noncoding	29744	G29744-	G	-	3	3	B.1.177.21	0.000229
noncoding	29744	G29744-	G	-	3	3	B.1.177.37	0.081081
noncoding	29744	G29744T	G	T	3	3	B.1.177.43	0.004431
noncoding	29744	G29744-	G	-	3	3	B.1.177.44	0.001557
noncoding	29744	G29744-	G	-	3	3	B.1.177.55	0.006993
noncoding	29744	G29744T	G	T	3	3	B.1.177.57	0.000843
noncoding	29744	G29744-	G	-	3	3	B.1.206	0.002447
noncoding	29744	G29744T	G	T	3	3	B.1.221	0.000213
noncoding	29744	G29744-	G	-	3	3	B.1.229	0.029126
noncoding	29744	G29744T	G	T	3	3	B.1.240	0.000647
noncoding	29744	G29744-	G	-	3	3	B.1.258.21	0.023256
noncoding	29744	G29744T	G	T	3	3	B.1.258.22	0.008
noncoding	29744	G29744-	G	-	3	3	B.1.349	0.002144
noncoding	29744	G29744-	G	-	3	3	B.1.356	0.005181
noncoding	29744	G29744-	G	-	3	3	B.1.36.16	0.004274
noncoding	29744	G29744-	G	-	3	3	B.1.36.17	0.001482
noncoding	29744	G29744-	G	-	3	3	B.1.36.31	0.005254
noncoding	29744	G29744T	G	T	3	3	B.1.396	0.002117
noncoding	29744	G29744-	G	-	3	3	B.1.396	0.002117
noncoding	29744	G29744C	G	C	3	3	B.1.399	0.005803
noncoding	29744	G29744-	G	-	3	3	B.1.409	0.002344
noncoding	29744	G29744T	G	T	3	3	B.1.416	0.003807
noncoding	29744	G29744A	G	A	3	3	B.1.427	0.000151
noncoding	29744	G29744T	G	T	3	3	B.1.428	0.003061
noncoding	29744	G29744-	G	-	3	3	B.1.44	0.025
noncoding	29744	G29744-	G	-	3	3	B.1.441	0.028846
noncoding	29744	G29744T	G	T	3	3	B.1.466.2	0.001174
noncoding	29744	G29744-	G	-	3	3	B.1.505	0.013158
noncoding	29744	G29744T	G	T	3	3	B.1.509	0.002597
noncoding	29744	G29744-	G	-	3	3	B.1.560	0.013889
noncoding	29744	G29744-	G	-	3	3	B.1.565	0.002431
noncoding	29744	G29744-	G	-	3	3	B.1.577	0.002062
noncoding	29744	G29744-	G	-	3	3	B.1.590	0.013636
noncoding	29744	G29744A	G	A	3	3	B.1.617.1	0.000387
noncoding	29744	G29744T	G	T	3	3	B.1.621	0.000266
noncoding	29744	G29744-	G	-	3	3	B.1.627	0.006061
noncoding	29744	G29744-	G	-	3	3	B.1.9.4	0.018405
noncoding	29744	G29744T	G	T	3	3	C.35	0.002322
noncoding	29744	G29744T	G	T	3	3	C.37	0.000348
noncoding	29744	G29744A	G	A	3	3	P.1.15	0.000697
noncoding	29744	G29744A	G	A	3	3	P.2	0.00056
noncoding	29744	G29744-	G	-	3	3	Q.1	0.000379
noncoding	29744	G29744T	G	T	2	2	A	0.000774
noncoding	29744	G29744-	G	-	2	2	A.2.3	0.009479
noncoding	29744	G29744T	G	T	2	2	A.2.5	0.000998
noncoding	29744	G29744-	G	-	2	2	A.23.1	0.001408
noncoding	29744	G29744A	G	A	2	2	A.29	0.010638
noncoding	29744	G29744-	G	-	2	2	AA.1	0.014493
noncoding	29744	G29744-	G	-	2	2	AD.2	0.000438
noncoding	29744	G29744-	G	-	2	2	AN.1	0.04
noncoding	29744	G29744A	G	A	2	2	AY.1	0.000791
noncoding	29744	G29744-	G	-	2	2	AY.10	0.00106
noncoding	29744	G29744A	G	A	2	2	AY.104	0.003968
noncoding	29744	G29744-	G	-	2	2	AY.106	0.00067
noncoding	29744	G29744A	G	A	2	2	AY.116	0.000574
noncoding	29744	G29744T	G	T	2	2	AY.16	0.000759
noncoding	29744	G29744-	G	-	2	2	AY.19	0.002281
noncoding	29744	G29744A	G	A	2	2	AY.19	0.002281
noncoding	29744	G29744A	G	A	2	2	AY.36	0.000296
noncoding	29744	G29744A	G	A	2	2	AY.38	0.000999
noncoding	29744	G29744C	G	C	2	2	AY.4	0.000003
noncoding	29744	G29744C	G	C	2	2	AY.43	0.000009
noncoding	29744	G29744C	G	C	2	2	AY.44	0.000012
noncoding	29744	G29744-	G	-	2	2	AY.46.2	0.001271
noncoding	29744	G29744-	G	-	2	2	AY.46.3	0.001867
noncoding	29744	G29744-	G	-	2	2	AY.48	0.00093
noncoding	29744	G29744-	G	-	2	2	AY.56	0.00321
noncoding	29744	G29744A	G	A	2	2	AY.69	0.000373
noncoding	29744	G29744A	G	A	2	2	AY.7.1	0.000225
noncoding	29744	G29744T	G	T	2	2	AY.7.1	0.000225
noncoding	29744	G29744-	G	-	2	2	AY.71	0.00095
noncoding	29744	G29744T	G	T	2	2	AY.85	0.000854
noncoding	29744	G29744A	G	A	2	2	AY.9.1	0.000167
noncoding	29744	G29744-	G	-	2	2	AY.94	0.000885
noncoding	29744	G29744-	G	-	2	2	AY.95	0.001522
noncoding	29744	G29744A	G	A	2	2	AY.98.1	0.000097
noncoding	29744	G29744-	G	-	2	2	AZ.2	0.001642
noncoding	29744	G29744T	G	T	2	2	AZ.2	0.001642
noncoding	29744	G29744A	G	A	2	2	B	0.000256
noncoding	29744	G29744C	G	C	2	2	B.1.1	0.000036
noncoding	29744	G29744-	G	-	2	2	B.1.1.161	0.007067
noncoding	29744	G29744-	G	-	2	2	B.1.1.170	0.002494
noncoding	29744	G29744-	G	-	2	2	B.1.1.186	0.006873
noncoding	29744	G29744-	G	-	2	2	B.1.1.216	0.001781
noncoding	29744	G29744T	G	T	2	2	B.1.1.216	0.001781
noncoding	29744	G29744-	G	-	2	2	B.1.1.218	0.015385
noncoding	29744	G29744A	G	A	2	2	B.1.1.269	0.002706
noncoding	29744	G29744T	G	T	2	2	B.1.1.270	0.020619
noncoding	29744	G29744-	G	-	2	2	B.1.1.275	0.022472
noncoding	29744	G29744A	G	A	2	2	B.1.1.277	0.001517
noncoding	29744	G29744-	G	-	2	2	B.1.1.289	0.004167
noncoding	29744	G29744A	G	A	2	2	B.1.1.291	0.001485
noncoding	29744	G29744A	G	A	2	2	B.1.1.294	0.002532
noncoding	29744	G29744-	G	-	2	2	B.1.1.303	0.005525
noncoding	29744	G29744-	G	-	2	2	B.1.1.305	0.007722
noncoding	29744	G29744T	G	T	2	2	B.1.1.318	0.000604
noncoding	29744	G29744T	G	T	2	2	B.1.1.326	0.003521
noncoding	29744	G29744-	G	-	2	2	B.1.1.345	0.086957
noncoding	29744	G29744-	G	-	2	2	B.1.1.348	0.001592
noncoding	29744	G29744-	G	-	2	2	B.1.1.354	0.008772
noncoding	29744	G29744A	G	A	2	2	B.1.1.368	0.006173
noncoding	29744	G29744-	G	-	2	2	B.1.1.372	0.001377
noncoding	29744	G29744-	G	-	2	2	B.1.1.376	0.011905
noncoding	29744	G29744-	G	-	2	2	B.1.1.389	0.012121
noncoding	29744	G29744A	G	A	2	2	B.1.1.416	0.00181
noncoding	29744	G29744-	G	-	2	2	B.1.1.432	0.002532
noncoding	29744	G29744-	G	-	2	2	B.1.1.466	0.017391
noncoding	29744	G29744T	G	T	2	2	B.1.1.50	0.001358
noncoding	29744	G29744-	G	-	2	2	B.1.1.50	0.001358
noncoding	29744	G29744A	G	A	2	2	B.1.1.526	0.007092
noncoding	29744	G29744-	G	-	2	2	B.1.1.528	0.009615
noncoding	29744	G29744-	G	-	2	2	B.1.1.71	0.012121
noncoding	29744	G29744-	G	-	2	2	B.1.110	0.00905
noncoding	29744	G29744-	G	-	2	2	B.1.111	0.00235
noncoding	29744	G29744-	G	-	2	2	B.1.126	0.002551
noncoding	29744	G29744-	G	-	2	2	B.1.160.32	0.008584
noncoding	29744	G29744-	G	-	2	2	B.1.177.10	0.001756
noncoding	29744	G29744T	G	T	2	2	B.1.177.35	0.001382
noncoding	29744	G29744-	G	-	2	2	B.1.177.4	0.000422
noncoding	29744	G29744-	G	-	2	2	B.1.177.57	0.000562
noncoding	29744	G29744-	G	-	2	2	B.1.177.77	0.001452
noncoding	29744	G29744-	G	-	2	2	B.1.177.78	0.019417
noncoding	29744	G29744A	G	A	2	2	B.1.177.81	0.000379
noncoding	29744	G29744T	G	T	2	2	B.1.177.86	0.000367
noncoding	29744	G29744-	G	-	2	2	B.1.189	0.008584
noncoding	29744	G29744C	G	C	2	2	B.1.2	0.000018
noncoding	29744	G29744-	G	-	2	2	B.1.214.2	0.001199
noncoding	29744	G29744T	G	T	2	2	B.1.218	0.010309
noncoding	29744	G29744-	G	-	2	2	B.1.23	0.012121
noncoding	29744	G29744-	G	-	2	2	B.1.258.10	0.022727
noncoding	29744	G29744-	G	-	2	2	B.1.298	0.004228
noncoding	29744	G29744-	G	-	2	2	B.1.301	0.011834
noncoding	29744	G29744A	G	A	2	2	B.1.311	0.000549
noncoding	29744	G29744A	G	A	2	2	B.1.337	0.011173
noncoding	29744	G29744-	G	-	2	2	B.1.350	0.005865
noncoding	29744	G29744-	G	-	2	2	B.1.36.10	0.009569
noncoding	29744	G29744-	G	-	2	2	B.1.36.26	0.005714
noncoding	29744	G29744-	G	-	2	2	B.1.36.8	0.002
noncoding	29744	G29744-	G	-	2	2	B.1.361	0.002577
noncoding	29744	G29744-	G	-	2	2	B.1.391	0.002255
noncoding	29744	G29744T	G	T	2	2	B.1.400	0.000858
noncoding	29744	G29744A	G	A	2	2	B.1.402	0.019608
noncoding	29744	G29744-	G	-	2	2	B.1.425	0.005988
noncoding	29744	G29744-	G	-	2	2	B.1.436	0.002058
noncoding	29744	G29744T	G	T	2	2	B.1.469	0.00722
noncoding	29744	G29744-	G	-	2	2	B.1.470	0.002809
noncoding	29744	G29744C	G	C	2	2	B.1.497	0.00063
noncoding	29744	G29744-	G	-	2	2	B.1.503	0.004975
noncoding	29744	G29744-	G	-	2	2	B.1.509	0.001732
noncoding	29744	G29744A	G	A	2	2	B.1.524	0.002813
noncoding	29744	G29744C	G	C	2	2	B.1.526	0.000047
noncoding	29744	G29744A	G	A	2	2	B.1.526	0.000047
noncoding	29744	G29744-	G	-	2	2	B.1.543	0.02
noncoding	29744	G29744-	G	-	2	2	B.1.551	0.002581
noncoding	29744	G29744C	G	C	2	2	B.1.561	0.000794
noncoding	29744	G29744-	G	-	2	2	B.1.567	0.006667
noncoding	29744	G29744-	G	-	2	2	B.1.575.1	0.004878
noncoding	29744	G29744A	G	A	2	2	B.1.596	0.000174
noncoding	29744	G29744-	G	-	2	2	B.1.617.1	0.000258
noncoding	29744	G29744-	G	-	2	2	B.1.620	0.001892
noncoding	29744	G29744-	G	-	2	2	B.1.628	0.000705
noncoding	29744	G29744A	G	A	2	2	B.1.9.4	0.01227
noncoding	29744	G29744-	G	-	2	2	B.3.1	0.003317
noncoding	29744	G29744T	G	T	2	2	B.35	0.015625
noncoding	29744	G29744-	G	-	2	2	C.36	0.001821
noncoding	29744	G29744A	G	A	2	2	C.37	0.000232
noncoding	29744	G29744-	G	-	2	2	C.38	0.016129
noncoding	29744	G29744T	G	T	2	2	D.2	0.00015
noncoding	29744	G29744A	G	A	2	2	N.5	0.003534
noncoding	29744	G29744T	G	T	2	2	P.1.10	0.000539
noncoding	29744	G29744T	G	T	2	2	P.1.12	0.000968
noncoding	29744	G29744-	G	-	2	2	P.1.13	0.001797
noncoding	29744	G29744A	G	A	2	2	P.1.14	0.000096
noncoding	29744	G29744T	G	T	2	2	P.2	0.000373
noncoding	29744	G29744T	G	T	2	2	P.3	0.00319
noncoding	29744	G29744-	G	-	2	2	P.6	0.006289
noncoding	29744	G29744A	G	A	2	2	Q.1	0.000253
noncoding	29744	G29744T	G	T	1	1	A.1	0.000282
noncoding	29744	G29744A	G	A	1	1	A.1	0.000282
noncoding	29744	G29744T	G	T	1	1	A.2	0.000662
noncoding	29744	G29744A	G	A	1	1	A.2	0.000662
noncoding	29744	G29744-	G	-	1	1	A.2	0.000662
noncoding	29744	G29744A	G	A	1	1	A.2.5	0.000499
noncoding	29744	G29744-	G	-	1	1	A.21	0.00277
noncoding	29744	G29744T	G	T	1	1	A.28	0.002646
noncoding	29744	G29744-	G	-	1	1	AH.2	0.012048
noncoding	29744	G29744-	G	-	1	1	AK.2	0.045455
noncoding	29744	G29744V	G	V	1	1	All	0
noncoding	29744	G29744-	G	-	1	1	AT.1	0.005128
noncoding	29744	G29744-	G	-	1	1	AU.1	0.001266
noncoding	29744	G29744-	G	-	1	1	AU.3	0.00211
noncoding	29744	G29744-	G	-	1	1	AY.105	0.000643
noncoding	29744	G29744-	G	-	1	1	AY.108	0.001103
noncoding	29744	G29744-	G	-	1	1	AY.116.1	0.000311
noncoding	29744	G29744A	G	A	1	1	AY.116.1	0.000311
noncoding	29744	G29744-	G	-	1	1	AY.120.1	0.000321
noncoding	29744	G29744T	G	T	1	1	AY.120.2	0.001285
noncoding	29744	G29744-	G	-	1	1	AY.120.2.1	0.000498
noncoding	29744	G29744T	G	T	1	1	AY.13	0.000161
noncoding	29744	G29744-	G	-	1	1	AY.16	0.00038
noncoding	29744	G29744T	G	T	1	1	AY.19	0.00114
noncoding	29744	G29744C	G	C	1	1	AY.23	0.00007
noncoding	29744	G29744A	G	A	1	1	AY.23.1	0.000417
noncoding	29744	G29744-	G	-	1	1	AY.24	0.000431
noncoding	29744	G29744A	G	A	1	1	AY.27	0.000065
noncoding	29744	G29744-	G	-	1	1	AY.29.1	0.000221
noncoding	29744	G29744C	G	C	1	1	AY.3	0.00001
noncoding	29744	G29744T	G	T	1	1	AY.3.1	0.000085
noncoding	29744	G29744A	G	A	1	1	AY.34.1	0.00051
noncoding	29744	G29744A	G	A	1	1	AY.35	0.000233
noncoding	29744	G29744T	G	T	1	1	AY.39.1	0.00004
noncoding	29744	G29744A	G	A	1	1	AY.4.1	0.000737
noncoding	29744	G29744-	G	-	1	1	AY.4.2.1	0.000149
noncoding	29744	G29744A	G	A	1	1	AY.4.2.1	0.000149
noncoding	29744	G29744T	G	T	1	1	AY.4.4	0.000409
noncoding	29744	G29744A	G	A	1	1	AY.4.4	0.000409
noncoding	29744	G29744A	G	A	1	1	AY.40	0.000964
noncoding	29744	G29744T	G	T	1	1	AY.40	0.000964
noncoding	29744	G29744T	G	T	1	1	AY.41	0.000294
noncoding	29744	G29744T	G	T	1	1	AY.46	0.000104
noncoding	29744	G29744A	G	A	1	1	AY.46.1	0.001027
noncoding	29744	G29744T	G	T	1	1	AY.46.1	0.001027
noncoding	29744	G29744T	G	T	1	1	AY.46.4	0.000165
noncoding	29744	G29744A	G	A	1	1	AY.46.4	0.000165
noncoding	29744	G29744A	G	A	1	1	AY.46.5	0.000198
noncoding	29744	G29744T	G	T	1	1	AY.47	0.000031
noncoding	29744	G29744T	G	T	1	1	AY.48	0.000465
noncoding	29744	G29744A	G	A	1	1	AY.48	0.000465
noncoding	29744	G29744T	G	T	1	1	AY.5.3	0.000337
noncoding	29744	G29744-	G	-	1	1	AY.52	0.000814
noncoding	29744	G29744-	G	-	1	1	AY.53	0.000288
noncoding	29744	G29744A	G	A	1	1	AY.53	0.000288
noncoding	29744	G29744A	G	A	1	1	AY.54	0.000095
noncoding	29744	G29744-	G	-	1	1	AY.55	0.000917
noncoding	29744	G29744T	G	T	1	1	AY.6	0.000041
noncoding	29744	G29744C	G	C	1	1	AY.60	0.000938
noncoding	29744	G29744-	G	-	1	1	AY.66	0.00107
noncoding	29744	G29744T	G	T	1	1	AY.68	0.000274
noncoding	29744	G29744A	G	A	1	1	AY.7	0.000196
noncoding	29744	G29744T	G	T	1	1	AY.7	0.000196
noncoding	29744	G29744T	G	T	1	1	AY.70	0.000209
noncoding	29744	G29744T	G	T	1	1	AY.73	0.000665
noncoding	29744	G29744A	G	A	1	1	AY.78	0.001541
noncoding	29744	G29744-	G	-	1	1	AY.81	0.001992
noncoding	29744	G29744T	G	T	1	1	AY.81	0.001992
noncoding	29744	G29744T	G	T	1	1	AY.84	0.000437
noncoding	29744	G29744A	G	A	1	1	AY.84	0.000437
noncoding	29744	G29744-	G	-	1	1	AY.87	0.000833
noncoding	29744	G29744T	G	T	1	1	AY.87	0.000833
noncoding	29744	G29744A	G	A	1	1	AY.88	0.000884
noncoding	29744	G29744-	G	-	1	1	AY.88	0.000884
noncoding	29744	G29744T	G	T	1	1	AY.9.1	0.000084
noncoding	29744	G29744-	G	-	1	1	AY.91	0.00073
noncoding	29744	G29744T	G	T	1	1	AY.92	0.000287
noncoding	29744	G29744A	G	A	1	1	AY.96	0.002075
noncoding	29744	G29744T	G	T	1	1	AY.99.2	0.000092
noncoding	29744	G29744-	G	-	1	1	AZ.1	0.000867
noncoding	29744	G29744T	G	T	1	1	B	0.000128
noncoding	29744	G29744A	G	A	1	1	B.1.1.1	0.000327
noncoding	29744	G29744-	G	-	1	1	B.1.1.10	0.001115
noncoding	29744	G29744-	G	-	1	1	B.1.1.139	0.022727
noncoding	29744	G29744-	G	-	1	1	B.1.1.154	0.04
noncoding	29744	G29744-	G	-	1	1	B.1.1.171	0.003676
noncoding	29744	G29744-	G	-	1	1	B.1.1.196	0.005714
noncoding	29744	G29744-	G	-	1	1	B.1.1.197	0.037037
noncoding	29744	G29744-	G	-	1	1	B.1.1.205	0.003717
noncoding	29744	G29744-	G	-	1	1	B.1.1.220	0.001859
noncoding	29744	G29744T	G	T	1	1	B.1.1.222	0.000204
noncoding	29744	G29744-	G	-	1	1	B.1.1.227	0.004348
noncoding	29744	G29744-	G	-	1	1	B.1.1.229	0.005747
noncoding	29744	G29744A	G	A	1	1	B.1.1.244	0.015385
noncoding	29744	G29744T	G	T	1	1	B.1.1.28	0.000311
noncoding	29744	G29744A	G	A	1	1	B.1.1.284	0.000107
noncoding	29744	G29744-	G	-	1	1	B.1.1.286	0.002899
noncoding	29744	G29744-	G	-	1	1	B.1.1.297	0.002237
noncoding	29744	G29744-	G	-	1	1	B.1.1.298	0.000862
noncoding	29744	G29744A	G	A	1	1	B.1.1.316	0.000925
noncoding	29744	G29744A	G	A	1	1	B.1.1.326	0.001761
noncoding	29744	G29744-	G	-	1	1	B.1.1.352	0.03125
noncoding	29744	G29744-	G	-	1	1	B.1.1.362	0.005618
noncoding	29744	G29744-	G	-	1	1	B.1.1.387	0.058824
noncoding	29744	G29744A	G	A	1	1	B.1.1.39	0.00051
noncoding	29744	G29744A	G	A	1	1	B.1.1.397	0.002252
noncoding	29744	G29744A	G	A	1	1	B.1.1.398	0.003226
noncoding	29744	G29744-	G	-	1	1	B.1.1.398	0.003226
noncoding	29744	G29744T	G	T	1	1	B.1.1.409	0.002833
noncoding	29744	G29744-	G	-	1	1	B.1.1.409	0.002833
noncoding	29744	G29744T	G	T	1	1	B.1.1.416	0.000905
noncoding	29744	G29744A	G	A	1	1	B.1.1.419	0.007407
noncoding	29744	G29744-	G	-	1	1	B.1.1.420	0.001006
noncoding	29744	G29744-	G	-	1	1	B.1.1.433	0.001425
noncoding	29744	G29744T	G	T	1	1	B.1.1.434	0.000349
noncoding	29744	G29744A	G	A	1	1	B.1.1.434	0.000349
noncoding	29744	G29744T	G	T	1	1	B.1.1.447	0.035714
noncoding	29744	G29744-	G	-	1	1	B.1.1.47	0.005348
noncoding	29744	G29744A	G	A	1	1	B.1.1.482	0.023256
noncoding	29744	G29744A	G	A	1	1	B.1.1.50	0.000679
noncoding	29744	G29744-	G	-	1	1	B.1.1.517	0.006803
noncoding	29744	G29744-	G	-	1	1	B.1.139	0.000733
noncoding	29744	G29744-	G	-	1	1	B.1.159	0.012195
noncoding	29744	G29744T	G	T	1	1	B.1.160	0.000031
noncoding	29744	G29744T	G	T	1	1	B.1.160.14	0.002119
noncoding	29744	G29744-	G	-	1	1	B.1.160.15	0.00495
noncoding	29744	G29744T	G	T	1	1	B.1.160.16	0.000929
noncoding	29744	G29744-	G	-	1	1	B.1.160.27	0.015152
noncoding	29744	G29744A	G	A	1	1	B.1.160.30	0.002976
noncoding	29744	G29744C	G	C	1	1	B.1.160.30	0.002976
noncoding	29744	G29744-	G	-	1	1	B.1.160.7	0.002079
noncoding	29744	G29744-	G	-	1	1	B.1.162	0.005025
noncoding	29744	G29744-	G	-	1	1	B.1.167	0.007812
noncoding	29744	G29744-	G	-	1	1	B.1.170	0.00431
noncoding	29744	G29744T	G	T	1	1	B.1.177.21	0.000076
noncoding	29744	G29744A	G	A	1	1	B.1.177.21	0.000076
noncoding	29744	G29744-	G	-	1	1	B.1.177.23	0.003236
noncoding	29744	G29744-	G	-	1	1	B.1.177.30	0.002513
noncoding	29744	G29744A	G	A	1	1	B.1.177.32	0.00135
noncoding	29744	G29744-	G	-	1	1	B.1.177.35	0.000691
noncoding	29744	G29744T	G	T	1	1	B.1.177.4	0.000211
noncoding	29744	G29744-	G	-	1	1	B.1.177.46	0.000918
noncoding	29744	G29744-	G	-	1	1	B.1.177.51	0.004566
noncoding	29744	G29744-	G	-	1	1	B.1.177.53	0.002392
noncoding	29744	G29744T	G	T	1	1	B.1.177.56	0.000668
noncoding	29744	G29744A	G	A	1	1	B.1.177.57	0.000281
noncoding	29744	G29744A	G	A	1	1	B.1.177.60	0.000218
noncoding	29744	G29744A	G	A	1	1	B.1.177.63	0.002703
noncoding	29744	G29744-	G	-	1	1	B.1.177.65	0.000665
noncoding	29744	G29744T	G	T	1	1	B.1.177.7	0.000165
noncoding	29744	G29744-	G	-	1	1	B.1.177.79	0.002342
noncoding	29744	G29744A	G	A	1	1	B.1.177.8	0.000752
noncoding	29744	G29744C	G	C	1	1	B.1.177.81	0.000189
noncoding	29744	G29744-	G	-	1	1	B.1.177.82	0.000477
noncoding	29744	G29744A	G	A	1	1	B.1.177.86	0.000183
noncoding	29744	G29744A	G	A	1	1	B.1.177.87	0.000728
noncoding	29744	G29744-	G	-	1	1	B.1.177.9	0.001332
noncoding	29744	G29744-	G	-	1	1	B.1.178	0.02381
noncoding	29744	G29744-	G	-	1	1	B.1.180	0.05
noncoding	29744	G29744-	G	-	1	1	B.1.181	0.019608
noncoding	29744	G29744-	G	-	1	1	B.1.192	0.009259
noncoding	29744	G29744-	G	-	1	1	B.1.195	0.005025
noncoding	29744	G29744C	G	C	1	1	B.1.214	0.003663
noncoding	29744	G29744T	G	T	1	1	B.1.214.2	0.0006
noncoding	29744	G29744A	G	A	1	1	B.1.221	0.000071
noncoding	29744	G29744-	G	-	1	1	B.1.221.4	0.004167
noncoding	29744	G29744-	G	-	1	1	B.1.222	0.001692
noncoding	29744	G29744T	G	T	1	1	B.1.222	0.001692
noncoding	29744	G29744-	G	-	1	1	B.1.232	0.000537
noncoding	29744	G29744A	G	A	1	1	B.1.234	0.000132
noncoding	29744	G29744T	G	T	1	1	B.1.237	0.004975
noncoding	29744	G29744-	G	-	1	1	B.1.237	0.004975
noncoding	29744	G29744T	G	T	1	1	B.1.241	0.000812
noncoding	29744	G29744-	G	-	1	1	B.1.242	0.018868
noncoding	29744	G29744-	G	-	1	1	B.1.258.16	0.001637
noncoding	29744	G29744-	G	-	1	1	B.1.258.24	0.010753
noncoding	29744	G29744T	G	T	1	1	B.1.260	0.003344
noncoding	29744	G29744-	G	-	1	1	B.1.265	0.001271
noncoding	29744	G29744-	G	-	1	1	B.1.291	0.019231
noncoding	29744	G29744T	G	T	1	1	B.1.311	0.000275
noncoding	29744	G29744-	G	-	1	1	B.1.320	0.001245
noncoding	29744	G29744-	G	-	1	1	B.1.336	0.002439
noncoding	29744	G29744-	G	-	1	1	B.1.337	0.005587
noncoding	29744	G29744C	G	C	1	1	B.1.351	0.00003
noncoding	29744	G29744A	G	A	1	1	B.1.351.5	0.0006
noncoding	29744	G29744-	G	-	1	1	B.1.359	0.022727
noncoding	29744	G29744C	G	C	1	1	B.1.36.1	0.00114
noncoding	29744	G29744T	G	T	1	1	B.1.36.18	0.00042
noncoding	29744	G29744-	G	-	1	1	B.1.36.19	0.009259
noncoding	29744	G29744-	G	-	1	1	B.1.36.36	0.000602
noncoding	29744	G29744-	G	-	1	1	B.1.36.38	0.001642
noncoding	29744	G29744A	G	A	1	1	B.1.36.38	0.001642
noncoding	29744	G29744T	G	T	1	1	B.1.361	0.001289
noncoding	29744	G29744-	G	-	1	1	B.1.362	0.001541
noncoding	29744	G29744A	G	A	1	1	B.1.369	0.000285
noncoding	29744	G29744-	G	-	1	1	B.1.375	0.00082
noncoding	29744	G29744-	G	-	1	1	B.1.380	0.006623
noncoding	29744	G29744-	G	-	1	1	B.1.390	0.010638
noncoding	29744	G29744T	G	T	1	1	B.1.401	0.008197
noncoding	29744	G29744A	G	A	1	1	B.1.411	0.003704
noncoding	29744	G29744A	G	A	1	1	B.1.416	0.001269
noncoding	29744	G29744-	G	-	1	1	B.1.424	0.008065
noncoding	29744	G29744T	G	T	1	1	B.1.427	0.00005
noncoding	29744	G29744-	G	-	1	1	B.1.428.3	0.012821
noncoding	29744	G29744C	G	C	1	1	B.1.429	0.000024
noncoding	29744	G29744-	G	-	1	1	B.1.433	0.003195
noncoding	29744	G29744-	G	-	1	1	B.1.443	0.004673
noncoding	29744	G29744T	G	T	1	1	B.1.456	0.003268
noncoding	29744	G29744C	G	C	1	1	B.1.466.2	0.000391
noncoding	29744	G29744-	G	-	1	1	B.1.478	0.011765
noncoding	29744	G29744A	G	A	1	1	B.1.480	0.002488
noncoding	29744	G29744-	G	-	1	1	B.1.493	0.025641
noncoding	29744	G29744T	G	T	1	1	B.1.499	0.00105
noncoding	29744	G29744-	G	-	1	1	B.1.499	0.00105
noncoding	29744	G29744-	G	-	1	1	B.1.508	0.025641
noncoding	29744	G29744-	G	-	1	1	B.1.524	0.001406
noncoding	29744	G29744V	G	V	1	1	B.1.525	0.000113
noncoding	29744	G29744C	G	C	1	1	B.1.525	0.000113
noncoding	29744	G29744-	G	-	1	1	B.1.530	0.007143
noncoding	29744	G29744-	G	-	1	1	B.1.547	0.02439
noncoding	29744	G29744T	G	T	1	1	B.1.558	0.004566
noncoding	29744	G29744-	G	-	1	1	B.1.558	0.004566
noncoding	29744	G29744-	G	-	1	1	B.1.564	0.000426
noncoding	29744	G29744A	G	A	1	1	B.1.564	0.000426
noncoding	29744	G29744-	G	-	1	1	B.1.564.1	0.001577
noncoding	29744	G29744T	G	T	1	1	B.1.576	0.000907
noncoding	29744	G29744-	G	-	1	1	B.1.580	0.004065
noncoding	29744	G29744-	G	-	1	1	B.1.595.1	0.005848
noncoding	29744	G29744-	G	-	1	1	B.1.597	0.00463
noncoding	29744	G29744T	G	T	1	1	B.1.597	0.00463
noncoding	29744	G29744-	G	-	1	1	B.1.6	0.017241
noncoding	29744	G29744-	G	-	1	1	B.1.600	0.005848
noncoding	29744	G29744T	G	T	1	1	B.1.617.1	0.000129
noncoding	29744	G29744C	G	C	1	1	B.1.617.2	0.000004
noncoding	29744	G29744-	G	-	1	1	B.1.617.3	0.002985
noncoding	29744	G29744A	G	A	1	1	B.1.618	0.004032
noncoding	29744	G29744-	G	-	1	1	B.1.621.1	0.000506
noncoding	29744	G29744A	G	A	1	1	B.1.623	0.000536
noncoding	29744	G29744A	G	A	1	1	B.1.625	0.002353
noncoding	29744	G29744T	G	T	1	1	B.1.627	0.00202
noncoding	29744	G29744-	G	-	1	1	B.1.631	0.003367
noncoding	29744	G29744T	G	T	1	1	B.1.632	0.006711
noncoding	29744	G29744-	G	-	1	1	B.1.633	0.041667
noncoding	29744	G29744T	G	T	1	1	B.1.637	0.000073
noncoding	29744	G29744-	G	-	1	1	B.1.81	0.021277
noncoding	29744	G29744-	G	-	1	1	B.10	0.008264
noncoding	29744	G29744-	G	-	1	1	B.3	0.000831
noncoding	29744	G29744-	G	-	1	1	B.31	0.003731
noncoding	29744	G29744T	G	T	1	1	B.39	0.002331
noncoding	29744	G29744-	G	-	1	1	B.4.1	0.018868
noncoding	29744	G29744-	G	-	1	1	B.4.2	0.066667
noncoding	29744	G29744-	G	-	1	1	B.55	0.00295
noncoding	29744	G29744-	G	-	1	1	B.58	0.010204
noncoding	29744	G29744-	G	-	1	1	B.6	0.00091
noncoding	29744	G29744-	G	-	1	1	B.6.6	0.000889
noncoding	29744	G29744A	G	A	1	1	B.6.8	0.008264
noncoding	29744	G29744-	G	-	1	1	C.1	0.002392
noncoding	29744	G29744A	G	A	1	1	C.1	0.002392
noncoding	29744	G29744-	G	-	1	1	C.1.2	0.004255
noncoding	29744	G29744A	G	A	1	1	C.16	0.00106
noncoding	29744	G29744-	G	-	1	1	C.18	0.002591
noncoding	29744	G29744T	G	T	1	1	C.30	0.001727
noncoding	29744	G29744-	G	-	1	1	C.35	0.000774
noncoding	29744	G29744A	G	A	1	1	D.2	0.000075
noncoding	29744	G29744-	G	-	1	1	L.3	0.003546
noncoding	29744	G29744-	G	-	1	1	N.6	0.007092
noncoding	29744	G29744C	G	C	1	1	P.1	0.000016
noncoding	29744	G29744A	G	A	1	1	P.1.1	0.000318
noncoding	29744	G29744-	G	-	1	1	P.1.11	0.010204
noncoding	29744	G29744T	G	T	1	1	P.1.13	0.000898
noncoding	29744	G29744T	G	T	1	1	P.1.15	0.000232
noncoding	29744	G29744A	G	A	1	1	P.1.17	0.000162
noncoding	29744	G29744T	G	T	1	1	P.1.17	0.000162
noncoding	29744	G29744-	G	-	1	1	P.1.2	0.001156
noncoding	29744	G29744A	G	A	1	1	P.1.7	0.000319
noncoding	29744	G29744-	G	-	1	1	P.7	0.004367
noncoding	29744	G29744T	G	T	1	1	Q.1	0.000126
noncoding	29744	G29744-	G	-	1	1	Q.3	0.000145
noncoding	29744	G29744A	G	A	1	1	Q.3	0.000145
noncoding	29744	G29744-	G	-	1	1	Q.7	0.001111
noncoding	29744	G29744A	G	A	1	1	Q.8	0.000165
noncoding	29744	G29744T	G	T	1	1	R.1	0.00009
noncoding	29744	G29744-	G	-	1	1	U.3	0.003861
noncoding	29744	G29744-	G	-	1	1	W.1	0.008696
noncoding	29744	G29744-	G	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.