CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29743

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29743	C29743-		noncoding	C	-	33878	33878	1	29743-29743
noncoding	29743	C29743T		noncoding	C	T	9783	9783	1	29743-29743
noncoding	29743	C29743A		noncoding	C	A	456	456	1	29743-29743
noncoding	29743	C29743G		noncoding	C	G	47	47	1	29743-29743
noncoding	29743	C29743R		noncoding	C	R	2	2	1	29743-29743

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29743	C29743-	C	-	33878	33878	All	0.00648
noncoding	29743	C29743T	C	T	9783	9783	All	0.001871
noncoding	29743	C29743-	C	-	9388	9388	B.1.526	0.22066
noncoding	29743	C29743-	C	-	5392	5392	B.1.1.7	0.004827
noncoding	29743	C29743-	C	-	3716	3716	B.1.525	0.420505
noncoding	29743	C29743T	C	T	2660	2660	B.1.1.7	0.002381
noncoding	29743	C29743T	C	T	2200	2200	B.1.466.2	0.86072
noncoding	29743	C29743-	C	-	1950	1950	AY.4	0.003035
noncoding	29743	C29743-	C	-	1762	1762	B.1.1.311	0.631089
noncoding	29743	C29743-	C	-	831	831	AY.38	0.414878
noncoding	29743	C29743-	C	-	530	530	B.1.617.2	0.001996
noncoding	29743	C29743-	C	-	524	524	B.1.429	0.012329
noncoding	29743	C29743T	C	T	503	503	B.1.351	0.014952
noncoding	29743	C29743A	C	A	456	456	All	0.000087
noncoding	29743	C29743T	C	T	451	451	AU.3	0.951477
noncoding	29743	C29743-	C	-	414	414	B.1.2	0.003645
noncoding	29743	C29743T	C	T	404	404	AU.2	0.978208
noncoding	29743	C29743-	C	-	398	398	B.1	0.003645
noncoding	29743	C29743-	C	-	396	396	B.1.177	0.005214
noncoding	29743	C29743-	C	-	370	370	B.1.177.81	0.070049
noncoding	29743	C29743-	C	-	365	365	B.1.351.2	0.110439
noncoding	29743	C29743T	C	T	354	354	AY.4	0.000551
noncoding	29743	C29743-	C	-	340	340	B.1.497	0.107019
noncoding	29743	C29743-	C	-	305	305	AY.39	0.007537
noncoding	29743	C29743-	C	-	305	305	P.1	0.004805
noncoding	29743	C29743T	C	T	299	299	B.1.2	0.002633
noncoding	29743	C29743-	C	-	288	288	AY.5	0.005947
noncoding	29743	C29743-	C	-	286	286	B.1.258.11	0.113357
noncoding	29743	C29743-	C	-	279	279	AY.25	0.001678
noncoding	29743	C29743-	C	-	216	216	B.1.221	0.015343
noncoding	29743	C29743-	C	-	213	213	B.1.1	0.003864
noncoding	29743	C29743-	C	-	201	201	B.1.160	0.006269
noncoding	29743	C29743-	C	-	186	186	AY.103	0.001155
noncoding	29743	C29743-	C	-	174	174	B.1.351	0.005172
noncoding	29743	C29743T	C	T	171	171	P.1	0.002694
noncoding	29743	C29743T	C	T	166	166	B.1	0.00152
noncoding	29743	C29743-	C	-	163	163	B.1.626	0.931429
noncoding	29743	C29743-	C	-	158	158	AY.43	0.0007
noncoding	29743	C29743-	C	-	151	151	B.1.621	0.013366
noncoding	29743	C29743-	C	-	145	145	AY.46.6	0.01047
noncoding	29743	C29743-	C	-	145	145	D.5	0.721393
noncoding	29743	C29743-	C	-	137	137	B.1.427	0.006918
noncoding	29743	C29743T	C	T	124	124	B.1.427	0.006262
noncoding	29743	C29743-	C	-	117	117	B.1.258	0.007786
noncoding	29743	C29743-	C	-	115	115	AY.120	0.004276
noncoding	29743	C29743-	C	-	113	113	AY.44	0.000688
noncoding	29743	C29743-	C	-	110	110	B.1.1.519	0.004368
noncoding	29743	C29743T	C	T	107	107	B.1.1	0.001941
noncoding	29743	C29743A	C	A	105	105	B.1.1.7	0.000094
noncoding	29743	C29743-	C	-	104	104	B.1.1.294	0.131646
noncoding	29743	C29743T	C	T	104	104	B.1.177	0.001369
noncoding	29743	C29743T	C	T	103	103	B.1.617.2	0.000388
noncoding	29743	C29743-	C	-	102	102	AY.42	0.004103
noncoding	29743	C29743-	C	-	100	100	B.1.1.63	0.03858
noncoding	29743	C29743A	C	A	99	99	B.1.110.3	0.071121
noncoding	29743	C29743T	C	T	97	97	B.1.429	0.002282
noncoding	29743	C29743-	C	-	96	96	AY.73	0.063872
noncoding	29743	C29743-	C	-	92	92	AY.3	0.000915
noncoding	29743	C29743-	C	-	92	92	AY.47	0.002862
noncoding	29743	C29743A	C	A	82	82	AY.43	0.000363
noncoding	29743	C29743-	C	-	82	82	B.1.243	0.005706
noncoding	29743	C29743T	C	T	77	77	B.1.588	0.070064
noncoding	29743	C29743T	C	T	74	74	AY.3	0.000736
noncoding	29743	C29743T	C	T	72	72	B.1.36.10	0.344498
noncoding	29743	C29743-	C	-	67	67	B.1.596	0.005838
noncoding	29743	C29743-	C	-	65	65	B.1.561	0.025804
noncoding	29743	C29743T	C	T	62	62	AY.44	0.000377
noncoding	29743	C29743T	C	T	59	59	B.1.1.526	0.20922
noncoding	29743	C29743-	C	-	57	57	C.16	0.060445
noncoding	29743	C29743-	C	-	57	57	D.2	0.004277
noncoding	29743	C29743T	C	T	56	56	B.1.160	0.001747
noncoding	29743	C29743-	C	-	55	55	C.37	0.006383
noncoding	29743	C29743-	C	-	54	54	B.1.241	0.043831
noncoding	29743	C29743T	C	T	53	53	B.1.348	0.963636
noncoding	29743	C29743-	C	-	50	50	AY.20	0.001943
noncoding	29743	C29743T	C	T	48	48	B.1.1.192	0.110855
noncoding	29743	C29743G	C	G	47	47	All	0.000009
noncoding	29743	C29743-	C	-	47	47	R.1	0.00423
noncoding	29743	C29743-	C	-	46	46	B.1.240	0.009916
noncoding	29743	C29743-	C	-	44	44	B.1.177.24	0.056995
noncoding	29743	C29743T	C	T	43	43	AY.103	0.000267
noncoding	29743	C29743-	C	-	43	43	P.1.14	0.002055
noncoding	29743	C29743-	C	-	42	42	AY.102	0.001114
noncoding	29743	C29743-	C	-	42	42	B.1.177.60	0.009174
noncoding	29743	C29743-	C	-	42	42	P.1.16	0.015713
noncoding	29743	C29743T	C	T	41	41	B.1.596	0.003573
noncoding	29743	C29743T	C	T	40	40	N.4	0.170213
noncoding	29743	C29743-	C	-	38	38	B.1.637	0.002777
noncoding	29743	C29743-	C	-	38	38	M.1	0.883721
noncoding	29743	C29743T	C	T	37	37	AY.6	0.001522
noncoding	29743	C29743T	C	T	37	37	B.1.526	0.00087
noncoding	29743	C29743T	C	T	37	37	B.1.637	0.002704
noncoding	29743	C29743-	C	-	35	35	AY.29	0.000552
noncoding	29743	C29743T	C	T	35	35	B.1.240	0.007545
noncoding	29743	C29743-	C	-	34	34	AY.119	0.0012
noncoding	29743	C29743T	C	T	34	34	AY.25	0.000205
noncoding	29743	C29743-	C	-	34	34	B.1.304	0.790698
noncoding	29743	C29743-	C	-	33	33	AY.26	0.000934
noncoding	29743	C29743-	C	-	33	33	B.1.258.17	0.003431
noncoding	29743	C29743-	C	-	32	32	B.1.36.18	0.013445
noncoding	29743	C29743-	C	-	32	32	B.1.595	0.008351
noncoding	29743	C29743T	C	T	31	31	B.1.1.33	0.013047
noncoding	29743	C29743-	C	-	30	30	B.1.1.434	0.010457
noncoding	29743	C29743-	C	-	29	29	AY.100	0.001334
noncoding	29743	C29743-	C	-	29	29	AY.4.2	0.000629
noncoding	29743	C29743-	C	-	29	29	B.1.619	0.025261
noncoding	29743	C29743T	C	T	28	28	AY.43	0.000124
noncoding	29743	C29743-	C	-	28	28	B.1.623	0.015021
noncoding	29743	C29743-	C	-	27	27	B.1.1.37	0.005207
noncoding	29743	C29743-	C	-	27	27	B.1.346	0.035387
noncoding	29743	C29743-	C	-	26	26	AY.6	0.001069
noncoding	29743	C29743T	C	T	26	26	B.1.243	0.001809
noncoding	29743	C29743T	C	T	26	26	B.1.588.1	1
noncoding	29743	C29743T	C	T	25	25	C.35	0.01935
noncoding	29743	C29743T	C	T	25	25	P.1.7	0.007982
noncoding	29743	C29743-	C	-	22	22	B.1.1.222	0.004488
noncoding	29743	C29743-	C	-	22	22	B.1.1.368	0.067901
noncoding	29743	C29743T	C	T	22	22	B.1.22	0.028986
noncoding	29743	C29743-	C	-	21	21	B.1.1.174	0.070946
noncoding	29743	C29743-	C	-	21	21	B.1.1.265	0.066246
noncoding	29743	C29743-	C	-	21	21	B.1.1.39	0.010703
noncoding	29743	C29743A	C	A	21	21	B.1.131	0.184211
noncoding	29743	C29743-	C	-	21	21	B.1.305	0.045161
noncoding	29743	C29743T	C	T	20	20	AY.9.1	0.001674
noncoding	29743	C29743T	C	T	20	20	B.1.1.25	0.01137
noncoding	29743	C29743-	C	-	20	20	B.1.311	0.005491
noncoding	29743	C29743-	C	-	20	20	B.1.404	0.026042
noncoding	29743	C29743-	C	-	20	20	B.1.576	0.018132
noncoding	29743	C29743-	C	-	20	20	B.1.588	0.018198
noncoding	29743	C29743T	C	T	20	20	P.1.14	0.000956
noncoding	29743	C29743-	C	-	19	19	AY.45	0.002312
noncoding	29743	C29743-	C	-	19	19	AY.92	0.005458
noncoding	29743	C29743T	C	T	19	19	P.2	0.003546
noncoding	29743	C29743T	C	T	19	19	W.4	0.025676
noncoding	29743	C29743-	C	-	18	18	AY.118	0.001128
noncoding	29743	C29743A	C	A	18	18	AY.4	0.000028
noncoding	29743	C29743-	C	-	18	18	B.1.1.172	0.327273
noncoding	29743	C29743-	C	-	18	18	B.1.1.307	0.04557
noncoding	29743	C29743-	C	-	18	18	B.1.177.86	0.003302
noncoding	29743	C29743T	C	T	18	18	B.1.258.17	0.001871
noncoding	29743	C29743-	C	-	18	18	B.1.289	0.047872
noncoding	29743	C29743T	C	T	18	18	B.1.36	0.002626
noncoding	29743	C29743-	C	-	18	18	B.1.556	0.135338
noncoding	29743	C29743-	C	-	18	18	B.1.562	0.333333
noncoding	29743	C29743-	C	-	18	18	B.1.575	0.005461
noncoding	29743	C29743T	C	T	18	18	C.37	0.002089
noncoding	29743	C29743-	C	-	18	18	P.2	0.003359
noncoding	29743	C29743T	C	T	17	17	AY.33	0.001135
noncoding	29743	C29743T	C	T	17	17	B.1.1.216	0.015138
noncoding	29743	C29743-	C	-	17	17	B.1.1.28	0.005291
noncoding	29743	C29743-	C	-	17	17	B.1.1.33	0.007155
noncoding	29743	C29743T	C	T	17	17	B.1.177.82	0.008115
noncoding	29743	C29743T	C	T	17	17	B.1.36.1	0.019384
noncoding	29743	C29743-	C	-	16	16	B.1.1.153	0.017525
noncoding	29743	C29743T	C	T	16	16	B.1.234	0.002111
noncoding	29743	C29743-	C	-	16	16	B.1.258.14	0.015686
noncoding	29743	C29743T	C	T	16	16	B.1.582	0.007851
noncoding	29743	C29743T	C	T	15	15	AY.102	0.000398
noncoding	29743	C29743-	C	-	15	15	B.1.1.214	0.000832
noncoding	29743	C29743T	C	T	15	15	B.1.258	0.000998
noncoding	29743	C29743-	C	-	15	15	B.1.36.1	0.017104
noncoding	29743	C29743-	C	-	15	15	B.1.36.29	0.00776
noncoding	29743	C29743T	C	T	14	14	AY.117	0.001183
noncoding	29743	C29743-	C	-	14	14	AY.9	0.000946
noncoding	29743	C29743-	C	-	14	14	B.1.177.7	0.002308
noncoding	29743	C29743T	C	T	13	13	AY.100	0.000598
noncoding	29743	C29743-	C	-	13	13	AY.61	0.001362
noncoding	29743	C29743-	C	-	13	13	AY.74	0.001503
noncoding	29743	C29743-	C	-	13	13	AY.75.1	0.002344
noncoding	29743	C29743-	C	-	13	13	AY.9.2	0.000477
noncoding	29743	C29743-	C	-	13	13	AY.98.1	0.00063
noncoding	29743	C29743-	C	-	13	13	B.1.1.25	0.007391
noncoding	29743	C29743T	C	T	13	13	B.1.1.519	0.000516
noncoding	29743	C29743T	C	T	13	13	B.1.221	0.000923
noncoding	29743	C29743-	C	-	13	13	B.1.36	0.001897
noncoding	29743	C29743-	C	-	13	13	B.1.416	0.016497
noncoding	29743	C29743T	C	T	13	13	B.1.474	0.024715
noncoding	29743	C29743-	C	-	13	13	B.1.581	0.122642
noncoding	29743	C29743-	C	-	13	13	P.1.15	0.00302
noncoding	29743	C29743A	C	A	12	12	AY.3	0.000119
noncoding	29743	C29743T	C	T	12	12	AY.39	0.000297
noncoding	29743	C29743-	C	-	12	12	B.1.1.306	0.005261
noncoding	29743	C29743-	C	-	12	12	B.1.1.317	0.00494
noncoding	29743	C29743T	C	T	12	12	B.1.1.37	0.002314
noncoding	29743	C29743-	C	-	12	12	B.1.1.416	0.01086
noncoding	29743	C29743-	C	-	12	12	B.1.177.75	0.012487
noncoding	29743	C29743T	C	T	12	12	B.1.462	0.086957
noncoding	29743	C29743T	C	T	12	12	B.1.567	0.04
noncoding	29743	C29743T	C	T	12	12	B.1.621	0.001062
noncoding	29743	C29743T	C	T	12	12	P.1.17	0.001941
noncoding	29743	C29743-	C	-	11	11	A.1	0.0031
noncoding	29743	C29743T	C	T	11	11	AD.2	0.002409
noncoding	29743	C29743-	C	-	11	11	AY.117	0.00093
noncoding	29743	C29743-	C	-	11	11	AY.23	0.000767
noncoding	29743	C29743T	C	T	11	11	AY.46.6	0.000794
noncoding	29743	C29743T	C	T	11	11	AY.5	0.000227
noncoding	29743	C29743T	C	T	11	11	AY.53	0.003163
noncoding	29743	C29743-	C	-	11	11	AY.75	0.000616
noncoding	29743	C29743-	C	-	11	11	AY.99.2	0.001014
noncoding	29743	C29743-	C	-	11	11	B.1.177.6	0.010742
noncoding	29743	C29743-	C	-	11	11	B.1.177.62	0.013111
noncoding	29743	C29743-	C	-	11	11	B.1.234	0.001451
noncoding	29743	C29743T	C	T	11	11	B.1.36.29	0.005691
noncoding	29743	C29743A	C	A	11	11	B.1.497	0.003462
noncoding	29743	C29743A	C	A	11	11	B.1.525	0.001245
noncoding	29743	C29743-	C	-	10	10	AY.114	0.002311
noncoding	29743	C29743T	C	T	10	10	AY.119	0.000353
noncoding	29743	C29743-	C	-	10	10	AY.46.4	0.001645
noncoding	29743	C29743-	C	-	10	10	B	0.001278
noncoding	29743	C29743A	C	A	10	10	B.1.1	0.000181
noncoding	29743	C29743T	C	T	10	10	B.1.1.214	0.000555
noncoding	29743	C29743-	C	-	10	10	B.1.1.397	0.022523
noncoding	29743	C29743G	C	G	10	10	B.1.1.7	0.000009
noncoding	29743	C29743-	C	-	10	10	B.1.400	0.00429
noncoding	29743	C29743-	C	-	10	10	B.1.599	0.036496
noncoding	29743	C29743-	C	-	10	10	P.1.4	0.009766
noncoding	29743	C29743T	C	T	9	9	AY.111	0.001648
noncoding	29743	C29743-	C	-	9	9	AY.12	0.002845
noncoding	29743	C29743-	C	-	9	9	AY.2	0.003205
noncoding	29743	C29743-	C	-	9	9	AY.34.1	0.004589
noncoding	29743	C29743-	C	-	9	9	AY.46	0.000937
noncoding	29743	C29743-	C	-	9	9	AY.46.5	0.001786
noncoding	29743	C29743-	C	-	9	9	AY.85	0.003845
noncoding	29743	C29743-	C	-	9	9	B.1.149	0.030822
noncoding	29743	C29743-	C	-	9	9	B.1.160.14	0.019068
noncoding	29743	C29743-	C	-	9	9	B.1.177.50	0.042254
noncoding	29743	C29743-	C	-	9	9	B.1.258.3	0.015075
noncoding	29743	C29743-	C	-	9	9	B.1.398	0.026786
noncoding	29743	C29743-	C	-	9	9	B.1.422	0.007311
noncoding	29743	C29743T	C	T	9	9	B.1.459	0.036735
noncoding	29743	C29743-	C	-	9	9	P.1.7	0.002874
noncoding	29743	C29743T	C	T	9	9	R.1	0.00081
noncoding	29743	C29743-	C	-	8	8	A	0.003096
noncoding	29743	C29743T	C	T	8	8	AY.20	0.000311
noncoding	29743	C29743T	C	T	8	8	AY.23	0.000558
noncoding	29743	C29743T	C	T	8	8	AY.29	0.000126
noncoding	29743	C29743-	C	-	8	8	AY.34	0.000776
noncoding	29743	C29743-	C	-	8	8	AY.54	0.000763
noncoding	29743	C29743-	C	-	8	8	B.1.1.316	0.007401
noncoding	29743	C29743T	C	T	8	8	B.1.177.19	0.011445
noncoding	29743	C29743-	C	-	8	8	B.1.36.22	0.009662
noncoding	29743	C29743-	C	-	8	8	B.1.466.2	0.00313
noncoding	29743	C29743T	C	T	8	8	B.1.525	0.000905
noncoding	29743	C29743A	C	A	8	8	B.1.617.2	0.00003
noncoding	29743	C29743-	C	-	8	8	B.1.93	0.00747
noncoding	29743	C29743-	C	-	8	8	C.36.3	0.004538
noncoding	29743	C29743-	C	-	8	8	P.1.1	0.002541
noncoding	29743	C29743-	C	-	8	8	Q.4	0.003638
noncoding	29743	C29743T	C	T	8	8	Q.8	0.001319
noncoding	29743	C29743T	C	T	7	7	AY.106	0.002344
noncoding	29743	C29743A	C	A	7	7	AY.117	0.000592
noncoding	29743	C29743-	C	-	7	7	AY.13	0.001127
noncoding	29743	C29743-	C	-	7	7	B.1.1.526	0.024823
noncoding	29743	C29743-	C	-	7	7	B.1.160.33	0.030973
noncoding	29743	C29743A	C	A	7	7	B.1.2	0.000062
noncoding	29743	C29743T	C	T	7	7	Q.3	0.001015
noncoding	29743	C29743T	C	T	6	6	AY.109	0.004438
noncoding	29743	C29743T	C	T	6	6	AY.13	0.000966
noncoding	29743	C29743-	C	-	6	6	AY.14	0.000528
noncoding	29743	C29743-	C	-	6	6	AY.33	0.000401
noncoding	29743	C29743-	C	-	6	6	AY.35	0.001398
noncoding	29743	C29743T	C	T	6	6	AY.61	0.000629
noncoding	29743	C29743-	C	-	6	6	AY.65	0.003198
noncoding	29743	C29743T	C	T	6	6	AY.99.2	0.000553
noncoding	29743	C29743A	C	A	6	6	B.1	0.000055
noncoding	29743	C29743T	C	T	6	6	B.1.1.277	0.004552
noncoding	29743	C29743T	C	T	6	6	B.1.1.317	0.00247
noncoding	29743	C29743-	C	-	6	6	B.1.1.318	0.001811
noncoding	29743	C29743-	C	-	6	6	B.1.110.3	0.00431
noncoding	29743	C29743-	C	-	6	6	B.1.177.12	0.00091
noncoding	29743	C29743T	C	T	6	6	B.1.177.60	0.001311
noncoding	29743	C29743-	C	-	6	6	B.1.177.73	0.003398
noncoding	29743	C29743T	C	T	6	6	B.1.177.73	0.003398
noncoding	29743	C29743T	C	T	6	6	B.1.177.81	0.001136
noncoding	29743	C29743-	C	-	6	6	B.1.177.87	0.004367
noncoding	29743	C29743T	C	T	6	6	B.1.351.2	0.001815
noncoding	29743	C29743-	C	-	6	6	B.1.389	0.006012
noncoding	29743	C29743G	C	G	6	6	B.1.497	0.001889
noncoding	29743	C29743-	C	-	6	6	B.1.517	0.002562
noncoding	29743	C29743-	C	-	6	6	B.39	0.013986
noncoding	29743	C29743-	C	-	6	6	B.40	0.002186
noncoding	29743	C29743T	C	T	6	6	D.2	0.00045
noncoding	29743	C29743-	C	-	6	6	N.4	0.025532
noncoding	29743	C29743-	C	-	6	6	N.5	0.010601
noncoding	29743	C29743T	C	T	6	6	P.1.16	0.002245
noncoding	29743	C29743-	C	-	6	6	Q.2	0.003681
noncoding	29743	C29743T	C	T	5	5	AY.116	0.001434
noncoding	29743	C29743A	C	A	5	5	AY.33	0.000334
noncoding	29743	C29743-	C	-	5	5	AY.36	0.000741
noncoding	29743	C29743A	C	A	5	5	AY.39	0.000124
noncoding	29743	C29743T	C	T	5	5	B	0.000639
noncoding	29743	C29743-	C	-	5	5	B.1.1.189	0.007564
noncoding	29743	C29743-	C	-	5	5	B.1.1.198	0.007342
noncoding	29743	C29743T	C	T	5	5	B.1.1.269	0.006766
noncoding	29743	C29743-	C	-	5	5	B.1.1.288	0.009579
noncoding	29743	C29743T	C	T	5	5	B.1.1.305	0.019305
noncoding	29743	C29743-	C	-	5	5	B.1.1.369	0.002231
noncoding	29743	C29743T	C	T	5	5	B.1.177.21	0.000382
noncoding	29743	C29743T	C	T	5	5	B.1.177.23	0.016181
noncoding	29743	C29743-	C	-	5	5	B.1.177.32	0.006748
noncoding	29743	C29743T	C	T	5	5	B.1.177.7	0.000824
noncoding	29743	C29743-	C	-	5	5	B.1.210	0.010661
noncoding	29743	C29743-	C	-	5	5	B.1.279	0.002568
noncoding	29743	C29743-	C	-	5	5	B.1.416.1	0.007812
noncoding	29743	C29743T	C	T	5	5	B.1.469	0.018051
noncoding	29743	C29743G	C	G	5	5	B.1.525	0.000566
noncoding	29743	C29743T	C	T	5	5	B.1.574	0.010753
noncoding	29743	C29743T	C	T	5	5	B.1.577	0.003436
noncoding	29743	C29743-	C	-	5	5	B.1.609	0.002397
noncoding	29743	C29743T	C	T	5	5	B.1.609	0.002397
noncoding	29743	C29743-	C	-	5	5	P.1.12	0.00242
noncoding	29743	C29743-	C	-	5	5	P.1.17	0.000809
noncoding	29743	C29743-	C	-	5	5	P.5	0.068493
noncoding	29743	C29743T	C	T	4	4	A	0.001548
noncoding	29743	C29743-	C	-	4	4	A.2.5	0.001996
noncoding	29743	C29743A	C	A	4	4	AY.103	0.000025
noncoding	29743	C29743-	C	-	4	4	AY.109	0.002959
noncoding	29743	C29743T	C	T	4	4	AY.3.1	0.000341
noncoding	29743	C29743-	C	-	4	4	AY.30	0.001583
noncoding	29743	C29743T	C	T	4	4	AY.42	0.000161
noncoding	29743	C29743T	C	T	4	4	AY.47	0.000124
noncoding	29743	C29743-	C	-	4	4	AY.59	0.002119
noncoding	29743	C29743T	C	T	4	4	AY.75	0.000224
noncoding	29743	C29743-	C	-	4	4	AY.84	0.00175
noncoding	29743	C29743T	C	T	4	4	AY.9.2	0.000147
noncoding	29743	C29743T	C	T	4	4	AZ.2	0.003284
noncoding	29743	C29743-	C	-	4	4	B.1.1.1	0.001307
noncoding	29743	C29743T	C	T	4	4	B.1.1.28	0.001245
noncoding	29743	C29743T	C	T	4	4	B.1.1.301	0.004717
noncoding	29743	C29743-	C	-	4	4	B.1.1.312	0.007648
noncoding	29743	C29743-	C	-	4	4	B.1.1.337	0.014388
noncoding	29743	C29743T	C	T	4	4	B.1.1.372	0.002755
noncoding	29743	C29743-	C	-	4	4	B.1.1.385	0.017857
noncoding	29743	C29743-	C	-	4	4	B.1.1.41	0.025316
noncoding	29743	C29743-	C	-	4	4	B.1.1.46	0.017467
noncoding	29743	C29743-	C	-	4	4	B.1.1.462	0.034483
noncoding	29743	C29743-	C	-	4	4	B.1.1.464	0.005891
noncoding	29743	C29743T	C	T	4	4	B.1.169	0.059701
noncoding	29743	C29743A	C	A	4	4	B.1.177	0.000053
noncoding	29743	C29743-	C	-	4	4	B.1.177.18	0.00464
noncoding	29743	C29743-	C	-	4	4	B.1.177.42	0.003578
noncoding	29743	C29743-	C	-	4	4	B.1.177.56	0.00267
noncoding	29743	C29743T	C	T	4	4	B.1.177.75	0.004162
noncoding	29743	C29743A	C	A	4	4	B.1.351	0.000119
noncoding	29743	C29743-	C	-	4	4	B.1.351.3	0.003506
noncoding	29743	C29743-	C	-	4	4	B.1.369	0.001141
noncoding	29743	C29743-	C	-	4	4	B.1.399	0.007737
noncoding	29743	C29743-	C	-	4	4	B.1.438.1	0.000429
noncoding	29743	C29743-	C	-	4	4	B.1.469	0.01444
noncoding	29743	C29743T	C	T	4	4	B.1.521	0.0199
noncoding	29743	C29743-	C	-	4	4	B.1.568	0.004444
noncoding	29743	C29743-	C	-	4	4	B.1.582	0.001963
noncoding	29743	C29743T	C	T	4	4	B.1.621.1	0.002023
noncoding	29743	C29743T	C	T	4	4	P.1.15	0.000929
noncoding	29743	C29743-	C	-	3	3	AY.110	0.000338
noncoding	29743	C29743-	C	-	3	3	AY.111	0.000549
noncoding	29743	C29743T	C	T	3	3	AY.120	0.000112
noncoding	29743	C29743T	C	T	3	3	AY.26	0.000085
noncoding	29743	C29743A	C	A	3	3	AY.26	0.000085
noncoding	29743	C29743-	C	-	3	3	AY.27	0.000194
noncoding	29743	C29743-	C	-	3	3	AY.3.1	0.000256
noncoding	29743	C29743-	C	-	3	3	AY.32	0.001597
noncoding	29743	C29743-	C	-	3	3	AY.39.1	0.000119
noncoding	29743	C29743T	C	T	3	3	AY.4.2	0.000065
noncoding	29743	C29743-	C	-	3	3	AY.40	0.002893
noncoding	29743	C29743T	C	T	3	3	AY.46	0.000312
noncoding	29743	C29743-	C	-	3	3	AY.5.3	0.001012
noncoding	29743	C29743-	C	-	3	3	AY.51	0.002727
noncoding	29743	C29743G	C	G	3	3	AY.6	0.000123
noncoding	29743	C29743-	C	-	3	3	AY.62	0.001307
noncoding	29743	C29743-	C	-	3	3	AY.7	0.000588
noncoding	29743	C29743T	C	T	3	3	AY.78	0.004622
noncoding	29743	C29743-	C	-	3	3	AY.9.1	0.000251
noncoding	29743	C29743-	C	-	3	3	AY.98	0.000237
noncoding	29743	C29743-	C	-	3	3	B.1.1.135	0.014085
noncoding	29743	C29743-	C	-	3	3	B.1.1.192	0.006928
noncoding	29743	C29743T	C	T	3	3	B.1.1.222	0.000612
noncoding	29743	C29743-	C	-	3	3	B.1.1.228	0.009146
noncoding	29743	C29743-	C	-	3	3	B.1.1.236	0.02069
noncoding	29743	C29743-	C	-	3	3	B.1.1.277	0.002276
noncoding	29743	C29743-	C	-	3	3	B.1.1.284	0.000322
noncoding	29743	C29743T	C	T	3	3	B.1.1.306	0.001315
noncoding	29743	C29743-	C	-	3	3	B.1.1.375	0.035714
noncoding	29743	C29743-	C	-	3	3	B.1.1.401	0.2
noncoding	29743	C29743T	C	T	3	3	B.1.1.409	0.008499
noncoding	29743	C29743-	C	-	3	3	B.1.1.428	0.028302
noncoding	29743	C29743-	C	-	3	3	B.1.1.518	0.018987
noncoding	29743	C29743-	C	-	3	3	B.1.1.57	0.034483
noncoding	29743	C29743T	C	T	3	3	B.1.1.63	0.001157
noncoding	29743	C29743-	C	-	3	3	B.1.1.70	0.001023
noncoding	29743	C29743T	C	T	3	3	B.1.13	0.007126
noncoding	29743	C29743-	C	-	3	3	B.1.145	0.157895
noncoding	29743	C29743T	C	T	3	3	B.1.177.18	0.00348
noncoding	29743	C29743-	C	-	3	3	B.1.177.21	0.000229
noncoding	29743	C29743T	C	T	3	3	B.1.177.35	0.002073
noncoding	29743	C29743-	C	-	3	3	B.1.177.37	0.081081
noncoding	29743	C29743-	C	-	3	3	B.1.177.44	0.001557
noncoding	29743	C29743-	C	-	3	3	B.1.177.55	0.006993
noncoding	29743	C29743-	C	-	3	3	B.1.206	0.002447
noncoding	29743	C29743T	C	T	3	3	B.1.222	0.005076
noncoding	29743	C29743-	C	-	3	3	B.1.229	0.029126
noncoding	29743	C29743-	C	-	3	3	B.1.258.21	0.023256
noncoding	29743	C29743-	C	-	3	3	B.1.349	0.002144
noncoding	29743	C29743-	C	-	3	3	B.1.36.16	0.004274
noncoding	29743	C29743-	C	-	3	3	B.1.36.17	0.001482
noncoding	29743	C29743-	C	-	3	3	B.1.36.31	0.005254
noncoding	29743	C29743T	C	T	3	3	B.1.36.36	0.001806
noncoding	29743	C29743-	C	-	3	3	B.1.396	0.002117
noncoding	29743	C29743T	C	T	3	3	B.1.398	0.008929
noncoding	29743	C29743-	C	-	3	3	B.1.409	0.002344
noncoding	29743	C29743-	C	-	3	3	B.1.44	0.025
noncoding	29743	C29743-	C	-	3	3	B.1.441	0.028846
noncoding	29743	C29743T	C	T	3	3	B.1.497	0.000944
noncoding	29743	C29743-	C	-	3	3	B.1.505	0.013158
noncoding	29743	C29743-	C	-	3	3	B.1.560	0.013889
noncoding	29743	C29743-	C	-	3	3	B.1.565	0.002431
noncoding	29743	C29743-	C	-	3	3	B.1.577	0.002062
noncoding	29743	C29743-	C	-	3	3	B.1.590	0.013636
noncoding	29743	C29743-	C	-	3	3	B.1.597	0.013889
noncoding	29743	C29743G	C	G	3	3	B.1.625	0.007059
noncoding	29743	C29743-	C	-	3	3	B.1.627	0.006061
noncoding	29743	C29743-	C	-	3	3	B.1.9.4	0.018405
noncoding	29743	C29743T	C	T	3	3	B.6.6	0.002667
noncoding	29743	C29743-	C	-	3	3	P.1.10	0.000808
noncoding	29743	C29743-	C	-	3	3	Q.1	0.000379
noncoding	29743	C29743-	C	-	3	3	Q.8	0.000495
noncoding	29743	C29743A	C	A	2	2		0.111111
noncoding	29743	C29743-	C	-	2	2	A.2.3	0.009479
noncoding	29743	C29743-	C	-	2	2	A.23.1	0.001408
noncoding	29743	C29743T	C	T	2	2	A.28	0.005291
noncoding	29743	C29743-	C	-	2	2	AA.1	0.014493
noncoding	29743	C29743-	C	-	2	2	AD.2	0.000438
noncoding	29743	C29743R	C	R	2	2	All	0
noncoding	29743	C29743-	C	-	2	2	AN.1	0.04
noncoding	29743	C29743T	C	T	2	2	AP.1	0.003003
noncoding	29743	C29743-	C	-	2	2	AY.10	0.00106
noncoding	29743	C29743-	C	-	2	2	AY.106	0.00067
noncoding	29743	C29743T	C	T	2	2	AY.113	0.000285
noncoding	29743	C29743T	C	T	2	2	AY.19	0.002281
noncoding	29743	C29743-	C	-	2	2	AY.19	0.002281
noncoding	29743	C29743T	C	T	2	2	AY.27	0.000129
noncoding	29743	C29743T	C	T	2	2	AY.34	0.000194
noncoding	29743	C29743G	C	G	2	2	AY.4	0.000003
noncoding	29743	C29743T	C	T	2	2	AY.4.1	0.001475
noncoding	29743	C29743A	C	A	2	2	AY.4.4	0.000818
noncoding	29743	C29743A	C	A	2	2	AY.44	0.000012
noncoding	29743	C29743T	C	T	2	2	AY.45	0.000243
noncoding	29743	C29743A	C	A	2	2	AY.46	0.000208
noncoding	29743	C29743-	C	-	2	2	AY.46.2	0.001271
noncoding	29743	C29743-	C	-	2	2	AY.46.3	0.001867
noncoding	29743	C29743G	C	G	2	2	AY.5	0.000041
noncoding	29743	C29743T	C	T	2	2	AY.54	0.000191
noncoding	29743	C29743-	C	-	2	2	AY.56	0.00321
noncoding	29743	C29743T	C	T	2	2	AY.58	0.001815
noncoding	29743	C29743T	C	T	2	2	AY.68	0.000547
noncoding	29743	C29743T	C	T	2	2	AY.69	0.000373
noncoding	29743	C29743-	C	-	2	2	AY.71	0.00095
noncoding	29743	C29743T	C	T	2	2	AY.74	0.000231
noncoding	29743	C29743T	C	T	2	2	AY.75.1	0.000361
noncoding	29743	C29743T	C	T	2	2	AY.84	0.000875
noncoding	29743	C29743A	C	A	2	2	AY.92	0.000575
noncoding	29743	C29743T	C	T	2	2	AY.92	0.000575
noncoding	29743	C29743-	C	-	2	2	AY.94	0.000885
noncoding	29743	C29743-	C	-	2	2	AY.95	0.001522
noncoding	29743	C29743T	C	T	2	2	AY.96	0.004149
noncoding	29743	C29743-	C	-	2	2	AZ.2	0.001642
noncoding	29743	C29743-	C	-	2	2	B.1.1.170	0.002494
noncoding	29743	C29743T	C	T	2	2	B.1.1.176	0.000879
noncoding	29743	C29743-	C	-	2	2	B.1.1.216	0.001781
noncoding	29743	C29743-	C	-	2	2	B.1.1.218	0.015385
noncoding	29743	C29743T	C	T	2	2	B.1.1.274	0.010101
noncoding	29743	C29743-	C	-	2	2	B.1.1.275	0.022472
noncoding	29743	C29743-	C	-	2	2	B.1.1.289	0.004167
noncoding	29743	C29743T	C	T	2	2	B.1.1.294	0.002532
noncoding	29743	C29743-	C	-	2	2	B.1.1.303	0.005525
noncoding	29743	C29743-	C	-	2	2	B.1.1.305	0.007722
noncoding	29743	C29743T	C	T	2	2	B.1.1.316	0.00185
noncoding	29743	C29743T	C	T	2	2	B.1.1.318	0.000604
noncoding	29743	C29743-	C	-	2	2	B.1.1.345	0.086957
noncoding	29743	C29743-	C	-	2	2	B.1.1.348	0.001592
noncoding	29743	C29743-	C	-	2	2	B.1.1.354	0.008772
noncoding	29743	C29743-	C	-	2	2	B.1.1.372	0.001377
noncoding	29743	C29743-	C	-	2	2	B.1.1.376	0.011905
noncoding	29743	C29743-	C	-	2	2	B.1.1.389	0.012121
noncoding	29743	C29743-	C	-	2	2	B.1.1.466	0.017391
noncoding	29743	C29743-	C	-	2	2	B.1.1.50	0.001358
noncoding	29743	C29743-	C	-	2	2	B.1.1.528	0.009615
noncoding	29743	C29743T	C	T	2	2	B.1.1.528	0.009615
noncoding	29743	C29743T	C	T	2	2	B.1.1.53	0.027397
noncoding	29743	C29743T	C	T	2	2	B.1.1.54	0.006042
noncoding	29743	C29743A	C	A	2	2	B.1.1.70	0.000682
noncoding	29743	C29743-	C	-	2	2	B.1.1.71	0.012121
noncoding	29743	C29743-	C	-	2	2	B.1.111	0.00235
noncoding	29743	C29743-	C	-	2	2	B.1.126	0.002551
noncoding	29743	C29743T	C	T	2	2	B.1.147	0.001512
noncoding	29743	C29743A	C	A	2	2	B.1.160	0.000062
noncoding	29743	C29743T	C	T	2	2	B.1.160.17	0.003401
noncoding	29743	C29743-	C	-	2	2	B.1.160.32	0.008584
noncoding	29743	C29743-	C	-	2	2	B.1.177.10	0.001756
noncoding	29743	C29743T	C	T	2	2	B.1.177.4	0.000422
noncoding	29743	C29743-	C	-	2	2	B.1.177.4	0.000422
noncoding	29743	C29743T	C	T	2	2	B.1.177.44	0.001038
noncoding	29743	C29743T	C	T	2	2	B.1.177.52	0.003515
noncoding	29743	C29743-	C	-	2	2	B.1.177.57	0.000562
noncoding	29743	C29743T	C	T	2	2	B.1.177.57	0.000562
noncoding	29743	C29743T	C	T	2	2	B.1.177.69	0.002967
noncoding	29743	C29743-	C	-	2	2	B.1.177.77	0.001452
noncoding	29743	C29743-	C	-	2	2	B.1.177.78	0.019417
noncoding	29743	C29743-	C	-	2	2	B.1.189	0.008584
noncoding	29743	C29743T	C	T	2	2	B.1.206	0.001631
noncoding	29743	C29743-	C	-	2	2	B.1.214.2	0.001199
noncoding	29743	C29743-	C	-	2	2	B.1.23	0.012121
noncoding	29743	C29743-	C	-	2	2	B.1.258.10	0.022727
noncoding	29743	C29743-	C	-	2	2	B.1.298	0.004228
noncoding	29743	C29743-	C	-	2	2	B.1.301	0.011834
noncoding	29743	C29743T	C	T	2	2	B.1.311	0.000549
noncoding	29743	C29743-	C	-	2	2	B.1.350	0.005865
noncoding	29743	C29743-	C	-	2	2	B.1.36.10	0.009569
noncoding	29743	C29743T	C	T	2	2	B.1.36.18	0.00084
noncoding	29743	C29743-	C	-	2	2	B.1.36.26	0.005714
noncoding	29743	C29743T	C	T	2	2	B.1.36.31	0.003503
noncoding	29743	C29743-	C	-	2	2	B.1.36.8	0.002
noncoding	29743	C29743-	C	-	2	2	B.1.361	0.002577
noncoding	29743	C29743T	C	T	2	2	B.1.361	0.002577
noncoding	29743	C29743T	C	T	2	2	B.1.367	0.001585
noncoding	29743	C29743T	C	T	2	2	B.1.389	0.002004
noncoding	29743	C29743-	C	-	2	2	B.1.391	0.002255
noncoding	29743	C29743T	C	T	2	2	B.1.400	0.000858
noncoding	29743	C29743T	C	T	2	2	B.1.415.1	0.015152
noncoding	29743	C29743-	C	-	2	2	B.1.425	0.005988
noncoding	29743	C29743T	C	T	2	2	B.1.428	0.002041
noncoding	29743	C29743-	C	-	2	2	B.1.436	0.002058
noncoding	29743	C29743T	C	T	2	2	B.1.460	0.035714
noncoding	29743	C29743T	C	T	2	2	B.1.467	0.08
noncoding	29743	C29743T	C	T	2	2	B.1.470	0.002809
noncoding	29743	C29743-	C	-	2	2	B.1.470	0.002809
noncoding	29743	C29743-	C	-	2	2	B.1.503	0.004975
noncoding	29743	C29743-	C	-	2	2	B.1.509	0.001732
noncoding	29743	C29743T	C	T	2	2	B.1.517	0.000854
noncoding	29743	C29743R	C	R	2	2	B.1.525	0.000226
noncoding	29743	C29743-	C	-	2	2	B.1.543	0.02
noncoding	29743	C29743-	C	-	2	2	B.1.551	0.002581
noncoding	29743	C29743-	C	-	2	2	B.1.567	0.006667
noncoding	29743	C29743-	C	-	2	2	B.1.575.1	0.004878
noncoding	29743	C29743T	C	T	2	2	B.1.595	0.000522
noncoding	29743	C29743-	C	-	2	2	B.1.617.1	0.000258
noncoding	29743	C29743T	C	T	2	2	B.1.619.1	0.001283
noncoding	29743	C29743-	C	-	2	2	B.1.620	0.001892
noncoding	29743	C29743T	C	T	2	2	B.1.620	0.001892
noncoding	29743	C29743-	C	-	2	2	B.1.628	0.000705
noncoding	29743	C29743T	C	T	2	2	B.1.631	0.006734
noncoding	29743	C29743-	C	-	2	2	B.3.1	0.003317
noncoding	29743	C29743T	C	T	2	2	B.4.1	0.037736
noncoding	29743	C29743T	C	T	2	2	B.6	0.00182
noncoding	29743	C29743-	C	-	2	2	C.36	0.001821
noncoding	29743	C29743-	C	-	2	2	C.38	0.016129
noncoding	29743	C29743T	C	T	2	2	P.1.12	0.000968
noncoding	29743	C29743-	C	-	2	2	P.1.13	0.001797
noncoding	29743	C29743T	C	T	2	2	P.4	0.007605
noncoding	29743	C29743-	C	-	2	2	P.6	0.006289
noncoding	29743	C29743T	C	T	2	2	Q.1	0.000253
noncoding	29743	C29743-	C	-	1	1	A.2	0.000662
noncoding	29743	C29743T	C	T	1	1	A.2.5	0.000499
noncoding	29743	C29743T	C	T	1	1	A.2.5.2	0.001572
noncoding	29743	C29743-	C	-	1	1	A.21	0.00277
noncoding	29743	C29743T	C	T	1	1	AA.5	0.016129
noncoding	29743	C29743T	C	T	1	1	AE.3	0.032258
noncoding	29743	C29743T	C	T	1	1	AE.8	0.000489
noncoding	29743	C29743-	C	-	1	1	AH.2	0.012048
noncoding	29743	C29743-	C	-	1	1	AK.2	0.045455
noncoding	29743	C29743-	C	-	1	1	AT.1	0.005128
noncoding	29743	C29743-	C	-	1	1	AU.1	0.001266
noncoding	29743	C29743-	C	-	1	1	AU.3	0.00211
noncoding	29743	C29743T	C	T	1	1	AW.1	0.003049
noncoding	29743	C29743A	C	A	1	1	AY.102	0.000027
noncoding	29743	C29743G	C	G	1	1	AY.103	0.000006
noncoding	29743	C29743-	C	-	1	1	AY.105	0.000643
noncoding	29743	C29743A	C	A	1	1	AY.106	0.000335
noncoding	29743	C29743-	C	-	1	1	AY.108	0.001103
noncoding	29743	C29743-	C	-	1	1	AY.116.1	0.000311
noncoding	29743	C29743A	C	A	1	1	AY.119	0.000035
noncoding	29743	C29743A	C	A	1	1	AY.120	0.000037
noncoding	29743	C29743-	C	-	1	1	AY.120.1	0.000321
noncoding	29743	C29743-	C	-	1	1	AY.120.2.1	0.000498
noncoding	29743	C29743A	C	A	1	1	AY.14	0.000088
noncoding	29743	C29743T	C	T	1	1	AY.14	0.000088
noncoding	29743	C29743-	C	-	1	1	AY.16	0.00038
noncoding	29743	C29743G	C	G	1	1	AY.23	0.00007
noncoding	29743	C29743A	C	A	1	1	AY.23	0.00007
noncoding	29743	C29743-	C	-	1	1	AY.24	0.000431
noncoding	29743	C29743-	C	-	1	1	AY.29.1	0.000221
noncoding	29743	C29743T	C	T	1	1	AY.30	0.000396
noncoding	29743	C29743A	C	A	1	1	AY.34	0.000097
noncoding	29743	C29743T	C	T	1	1	AY.36	0.000148
noncoding	29743	C29743G	C	G	1	1	AY.39	0.000025
noncoding	29743	C29743A	C	A	1	1	AY.39.1	0.00004
noncoding	29743	C29743-	C	-	1	1	AY.4.2.1	0.000149
noncoding	29743	C29743T	C	T	1	1	AY.4.2.1	0.000149
noncoding	29743	C29743T	C	T	1	1	AY.4.5	0.000107
noncoding	29743	C29743A	C	A	1	1	AY.41	0.000294
noncoding	29743	C29743T	C	T	1	1	AY.46.5	0.000198
noncoding	29743	C29743-	C	-	1	1	AY.48	0.000465
noncoding	29743	C29743T	C	T	1	1	AY.5.3	0.000337
noncoding	29743	C29743-	C	-	1	1	AY.52	0.000814
noncoding	29743	C29743A	C	A	1	1	AY.52	0.000814
noncoding	29743	C29743-	C	-	1	1	AY.53	0.000288
noncoding	29743	C29743T	C	T	1	1	AY.55	0.000917
noncoding	29743	C29743-	C	-	1	1	AY.55	0.000917
noncoding	29743	C29743T	C	T	1	1	AY.56	0.001605
noncoding	29743	C29743T	C	T	1	1	AY.60	0.000938
noncoding	29743	C29743-	C	-	1	1	AY.66	0.00107
noncoding	29743	C29743T	C	T	1	1	AY.67	0.000464
noncoding	29743	C29743A	C	A	1	1	AY.69	0.000187
noncoding	29743	C29743G	C	G	1	1	AY.7	0.000196
noncoding	29743	C29743T	C	T	1	1	AY.70	0.000209
noncoding	29743	C29743T	C	T	1	1	AY.79	0.001211
noncoding	29743	C29743T	C	T	1	1	AY.80	0.001129
noncoding	29743	C29743-	C	-	1	1	AY.81	0.001992
noncoding	29743	C29743-	C	-	1	1	AY.87	0.000833
noncoding	29743	C29743-	C	-	1	1	AY.88	0.000884
noncoding	29743	C29743T	C	T	1	1	AY.9	0.000068
noncoding	29743	C29743-	C	-	1	1	AY.91	0.00073
noncoding	29743	C29743T	C	T	1	1	AY.98	0.000079
noncoding	29743	C29743T	C	T	1	1	AY.98.1	0.000048
noncoding	29743	C29743T	C	T	1	1	AY.99	0.001049
noncoding	29743	C29743T	C	T	1	1	AZ.1	0.000867
noncoding	29743	C29743-	C	-	1	1	AZ.1	0.000867
noncoding	29743	C29743T	C	T	1	1	AZ.2.1	0.00813
noncoding	29743	C29743G	C	G	1	1	B.1	0.000009
noncoding	29743	C29743G	C	G	1	1	B.1.1	0.000018
noncoding	29743	C29743T	C	T	1	1	B.1.1.1	0.000327
noncoding	29743	C29743-	C	-	1	1	B.1.1.10	0.001115
noncoding	29743	C29743T	C	T	1	1	B.1.1.12	0.007463
noncoding	29743	C29743T	C	T	1	1	B.1.1.134	0.011364
noncoding	29743	C29743-	C	-	1	1	B.1.1.139	0.022727
noncoding	29743	C29743-	C	-	1	1	B.1.1.154	0.04
noncoding	29743	C29743T	C	T	1	1	B.1.1.163	0.007634
noncoding	29743	C29743G	C	G	1	1	B.1.1.186	0.003436
noncoding	29743	C29743-	C	-	1	1	B.1.1.186	0.003436
noncoding	29743	C29743-	C	-	1	1	B.1.1.196	0.005714
noncoding	29743	C29743-	C	-	1	1	B.1.1.197	0.037037
noncoding	29743	C29743-	C	-	1	1	B.1.1.205	0.003717
noncoding	29743	C29743G	C	G	1	1	B.1.1.214	0.000055
noncoding	29743	C29743A	C	A	1	1	B.1.1.222	0.000204
noncoding	29743	C29743-	C	-	1	1	B.1.1.227	0.004348
noncoding	29743	C29743-	C	-	1	1	B.1.1.229	0.005747
noncoding	29743	C29743T	C	T	1	1	B.1.1.243	0.004082
noncoding	29743	C29743T	C	T	1	1	B.1.1.27	0.00565
noncoding	29743	C29743T	C	T	1	1	B.1.1.284	0.000107
noncoding	29743	C29743-	C	-	1	1	B.1.1.286	0.002899
noncoding	29743	C29743-	C	-	1	1	B.1.1.297	0.002237
noncoding	29743	C29743-	C	-	1	1	B.1.1.298	0.000862
noncoding	29743	C29743G	C	G	1	1	B.1.1.306	0.000438
noncoding	29743	C29743T	C	T	1	1	B.1.1.311	0.000358
noncoding	29743	C29743T	C	T	1	1	B.1.1.326	0.001761
noncoding	29743	C29743T	C	T	1	1	B.1.1.329	0.003846
noncoding	29743	C29743T	C	T	1	1	B.1.1.337	0.003597
noncoding	29743	C29743-	C	-	1	1	B.1.1.352	0.03125
noncoding	29743	C29743-	C	-	1	1	B.1.1.362	0.005618
noncoding	29743	C29743T	C	T	1	1	B.1.1.397	0.002252
noncoding	29743	C29743-	C	-	1	1	B.1.1.398	0.003226
noncoding	29743	C29743T	C	T	1	1	B.1.1.402	0.011111
noncoding	29743	C29743T	C	T	1	1	B.1.1.407	0.041667
noncoding	29743	C29743T	C	T	1	1	B.1.1.411	0.014706
noncoding	29743	C29743T	C	T	1	1	B.1.1.416	0.000905
noncoding	29743	C29743-	C	-	1	1	B.1.1.420	0.001006
noncoding	29743	C29743-	C	-	1	1	B.1.1.432	0.001266
noncoding	29743	C29743T	C	T	1	1	B.1.1.432	0.001266
noncoding	29743	C29743-	C	-	1	1	B.1.1.433	0.001425
noncoding	29743	C29743T	C	T	1	1	B.1.1.434	0.000349
noncoding	29743	C29743T	C	T	1	1	B.1.1.45	0.014085
noncoding	29743	C29743T	C	T	1	1	B.1.1.462	0.008621
noncoding	29743	C29743-	C	-	1	1	B.1.1.47	0.005348
noncoding	29743	C29743G	C	G	1	1	B.1.1.50	0.000679
noncoding	29743	C29743T	C	T	1	1	B.1.1.507	0.008696
noncoding	29743	C29743T	C	T	1	1	B.1.1.51	0.001718
noncoding	29743	C29743-	C	-	1	1	B.1.1.517	0.006803
noncoding	29743	C29743T	C	T	1	1	B.1.1.523	0.001563
noncoding	29743	C29743T	C	T	1	1	B.1.1.67	0.004566
noncoding	29743	C29743T	C	T	1	1	B.1.1.70	0.000341
noncoding	29743	C29743T	C	T	1	1	B.1.1.74	0.00431
noncoding	29743	C29743T	C	T	1	1	B.1.108	0.005814
noncoding	29743	C29743-	C	-	1	1	B.1.110	0.004525
noncoding	29743	C29743T	C	T	1	1	B.1.126	0.001276
noncoding	29743	C29743-	C	-	1	1	B.1.139	0.000733
noncoding	29743	C29743T	C	T	1	1	B.1.146	0.004237
noncoding	29743	C29743T	C	T	1	1	B.1.157	0.002985
noncoding	29743	C29743-	C	-	1	1	B.1.159	0.012195
noncoding	29743	C29743G	C	G	1	1	B.1.160	0.000031
noncoding	29743	C29743T	C	T	1	1	B.1.160.14	0.002119
noncoding	29743	C29743-	C	-	1	1	B.1.160.15	0.00495
noncoding	29743	C29743-	C	-	1	1	B.1.160.27	0.015152
noncoding	29743	C29743A	C	A	1	1	B.1.160.30	0.002976
noncoding	29743	C29743T	C	T	1	1	B.1.160.33	0.004425
noncoding	29743	C29743-	C	-	1	1	B.1.160.7	0.002079
noncoding	29743	C29743-	C	-	1	1	B.1.162	0.005025
noncoding	29743	C29743-	C	-	1	1	B.1.167	0.007812
noncoding	29743	C29743-	C	-	1	1	B.1.170	0.00431
noncoding	29743	C29743T	C	T	1	1	B.1.177.10	0.000878
noncoding	29743	C29743-	C	-	1	1	B.1.177.23	0.003236
noncoding	29743	C29743G	C	G	1	1	B.1.177.26	0.006993
noncoding	29743	C29743T	C	T	1	1	B.1.177.3	0.007634
noncoding	29743	C29743-	C	-	1	1	B.1.177.30	0.002513
noncoding	29743	C29743G	C	G	1	1	B.1.177.32	0.00135
noncoding	29743	C29743-	C	-	1	1	B.1.177.35	0.000691
noncoding	29743	C29743T	C	T	1	1	B.1.177.45	0.000381
noncoding	29743	C29743-	C	-	1	1	B.1.177.46	0.000918
noncoding	29743	C29743-	C	-	1	1	B.1.177.51	0.004566
noncoding	29743	C29743-	C	-	1	1	B.1.177.53	0.002392
noncoding	29743	C29743T	C	T	1	1	B.1.177.54	0.000606
noncoding	29743	C29743A	C	A	1	1	B.1.177.60	0.000218
noncoding	29743	C29743T	C	T	1	1	B.1.177.65	0.000665
noncoding	29743	C29743-	C	-	1	1	B.1.177.65	0.000665
noncoding	29743	C29743-	C	-	1	1	B.1.177.79	0.002342
noncoding	29743	C29743T	C	T	1	1	B.1.177.80	0.001912
noncoding	29743	C29743-	C	-	1	1	B.1.177.82	0.000477
noncoding	29743	C29743-	C	-	1	1	B.1.177.9	0.001332
noncoding	29743	C29743-	C	-	1	1	B.1.178	0.02381
noncoding	29743	C29743-	C	-	1	1	B.1.180	0.05
noncoding	29743	C29743-	C	-	1	1	B.1.181	0.019608
noncoding	29743	C29743-	C	-	1	1	B.1.192	0.009259
noncoding	29743	C29743-	C	-	1	1	B.1.195	0.005025
noncoding	29743	C29743T	C	T	1	1	B.1.201	0.005682
noncoding	29743	C29743T	C	T	1	1	B.1.210	0.002132
noncoding	29743	C29743T	C	T	1	1	B.1.218	0.005155
noncoding	29743	C29743A	C	A	1	1	B.1.221	0.000071
noncoding	29743	C29743-	C	-	1	1	B.1.221.4	0.004167
noncoding	29743	C29743-	C	-	1	1	B.1.222	0.001692
noncoding	29743	C29743-	C	-	1	1	B.1.232	0.000537
noncoding	29743	C29743T	C	T	1	1	B.1.233	0.014085
noncoding	29743	C29743T	C	T	1	1	B.1.236	0.002053
noncoding	29743	C29743-	C	-	1	1	B.1.237	0.004975
noncoding	29743	C29743-	C	-	1	1	B.1.242	0.018868
noncoding	29743	C29743T	C	T	1	1	B.1.248	0.029412
noncoding	29743	C29743-	C	-	1	1	B.1.258.16	0.001637
noncoding	29743	C29743-	C	-	1	1	B.1.258.24	0.010753
noncoding	29743	C29743T	C	T	1	1	B.1.260	0.003344
noncoding	29743	C29743-	C	-	1	1	B.1.265	0.001271
noncoding	29743	C29743-	C	-	1	1	B.1.291	0.019231
noncoding	29743	C29743T	C	T	1	1	B.1.319	0.003049
noncoding	29743	C29743-	C	-	1	1	B.1.320	0.001245
noncoding	29743	C29743T	C	T	1	1	B.1.324	0.001605
noncoding	29743	C29743T	C	T	1	1	B.1.336	0.002439
noncoding	29743	C29743-	C	-	1	1	B.1.336	0.002439
noncoding	29743	C29743-	C	-	1	1	B.1.337	0.005587
noncoding	29743	C29743T	C	T	1	1	B.1.343	0.020833
noncoding	29743	C29743T	C	T	1	1	B.1.349	0.000715
noncoding	29743	C29743T	C	T	1	1	B.1.351.3	0.000876
noncoding	29743	C29743-	C	-	1	1	B.1.359	0.022727
noncoding	29743	C29743A	C	A	1	1	B.1.36	0.000146
noncoding	29743	C29743T	C	T	1	1	B.1.36.17	0.000494
noncoding	29743	C29743-	C	-	1	1	B.1.36.19	0.009259
noncoding	29743	C29743-	C	-	1	1	B.1.36.36	0.000602
noncoding	29743	C29743T	C	T	1	1	B.1.36.37	0.002778
noncoding	29743	C29743T	C	T	1	1	B.1.36.38	0.001642
noncoding	29743	C29743-	C	-	1	1	B.1.36.38	0.001642
noncoding	29743	C29743-	C	-	1	1	B.1.362	0.001541
noncoding	29743	C29743T	C	T	1	1	B.1.369	0.000285
noncoding	29743	C29743T	C	T	1	1	B.1.370	0.008
noncoding	29743	C29743T	C	T	1	1	B.1.375	0.00082
noncoding	29743	C29743-	C	-	1	1	B.1.375	0.00082
noncoding	29743	C29743T	C	T	1	1	B.1.378	0.006849
noncoding	29743	C29743-	C	-	1	1	B.1.390	0.010638
noncoding	29743	C29743T	C	T	1	1	B.1.397	0.004854
noncoding	29743	C29743T	C	T	1	1	B.1.416.1	0.001563
noncoding	29743	C29743T	C	T	1	1	B.1.417	0.028571
noncoding	29743	C29743-	C	-	1	1	B.1.424	0.008065
noncoding	29743	C29743T	C	T	1	1	B.1.425	0.002994
noncoding	29743	C29743T	C	T	1	1	B.1.428.2	0.033333
noncoding	29743	C29743-	C	-	1	1	B.1.428.3	0.012821
noncoding	29743	C29743-	C	-	1	1	B.1.433	0.003195
noncoding	29743	C29743T	C	T	1	1	B.1.433	0.003195
noncoding	29743	C29743T	C	T	1	1	B.1.438.1	0.000107
noncoding	29743	C29743-	C	-	1	1	B.1.443	0.004673
noncoding	29743	C29743A	C	A	1	1	B.1.456	0.003268
noncoding	29743	C29743T	C	T	1	1	B.1.471	0.002732
noncoding	29743	C29743-	C	-	1	1	B.1.478	0.011765
noncoding	29743	C29743-	C	-	1	1	B.1.493	0.025641
noncoding	29743	C29743-	C	-	1	1	B.1.499	0.00105
noncoding	29743	C29743-	C	-	1	1	B.1.508	0.025641
noncoding	29743	C29743T	C	T	1	1	B.1.509	0.000866
noncoding	29743	C29743T	C	T	1	1	B.1.524	0.001406
noncoding	29743	C29743-	C	-	1	1	B.1.524	0.001406
noncoding	29743	C29743G	C	G	1	1	B.1.526	0.000024
noncoding	29743	C29743-	C	-	1	1	B.1.530	0.007143
noncoding	29743	C29743T	C	T	1	1	B.1.533	0.009615
noncoding	29743	C29743T	C	T	1	1	B.1.538	0.008065
noncoding	29743	C29743-	C	-	1	1	B.1.547	0.02439
noncoding	29743	C29743-	C	-	1	1	B.1.558	0.004566
noncoding	29743	C29743-	C	-	1	1	B.1.564	0.000426
noncoding	29743	C29743-	C	-	1	1	B.1.564.1	0.001577
noncoding	29743	C29743T	C	T	1	1	B.1.575	0.000303
noncoding	29743	C29743T	C	T	1	1	B.1.576	0.000907
noncoding	29743	C29743T	C	T	1	1	B.1.580	0.004065
noncoding	29743	C29743-	C	-	1	1	B.1.580	0.004065
noncoding	29743	C29743T	C	T	1	1	B.1.585	0.027778
noncoding	29743	C29743T	C	T	1	1	B.1.587	0.001898
noncoding	29743	C29743-	C	-	1	1	B.1.595.1	0.005848
noncoding	29743	C29743-	C	-	1	1	B.1.6	0.017241
noncoding	29743	C29743-	C	-	1	1	B.1.600	0.005848
noncoding	29743	C29743G	C	G	1	1	B.1.617.2	0.000004
noncoding	29743	C29743-	C	-	1	1	B.1.617.3	0.002985
noncoding	29743	C29743-	C	-	1	1	B.1.621.1	0.000506
noncoding	29743	C29743T	C	T	1	1	B.1.628	0.000352
noncoding	29743	C29743-	C	-	1	1	B.1.631	0.003367
noncoding	29743	C29743-	C	-	1	1	B.1.633	0.041667
noncoding	29743	C29743T	C	T	1	1	B.1.634	0.003425
noncoding	29743	C29743-	C	-	1	1	B.1.81	0.021277
noncoding	29743	C29743T	C	T	1	1	B.1.81	0.021277
noncoding	29743	C29743T	C	T	1	1	B.1.93	0.000934
noncoding	29743	C29743-	C	-	1	1	B.10	0.008264
noncoding	29743	C29743-	C	-	1	1	B.3	0.000831
noncoding	29743	C29743T	C	T	1	1	B.3	0.000831
noncoding	29743	C29743T	C	T	1	1	B.3.1	0.001658
noncoding	29743	C29743-	C	-	1	1	B.31	0.003731
noncoding	29743	C29743-	C	-	1	1	B.4.2	0.066667
noncoding	29743	C29743-	C	-	1	1	B.55	0.00295
noncoding	29743	C29743-	C	-	1	1	B.58	0.010204
noncoding	29743	C29743-	C	-	1	1	B.6	0.00091
noncoding	29743	C29743-	C	-	1	1	B.6.6	0.000889
noncoding	29743	C29743-	C	-	1	1	C.1	0.002392
noncoding	29743	C29743-	C	-	1	1	C.1.2	0.004255
noncoding	29743	C29743-	C	-	1	1	C.18	0.002591
noncoding	29743	C29743T	C	T	1	1	C.18	0.002591
noncoding	29743	C29743T	C	T	1	1	C.2	0.016129
noncoding	29743	C29743A	C	A	1	1	C.26	0.007353
noncoding	29743	C29743-	C	-	1	1	C.35	0.000774
noncoding	29743	C29743T	C	T	1	1	C.36.3	0.000567
noncoding	29743	C29743T	C	T	1	1	C.37.1	0.002618
noncoding	29743	C29743T	C	T	1	1	C.39	0.018868
noncoding	29743	C29743-	C	-	1	1	L.3	0.003546
noncoding	29743	C29743T	C	T	1	1	L.3	0.003546
noncoding	29743	C29743T	C	T	1	1	N.5	0.001767
noncoding	29743	C29743-	C	-	1	1	N.6	0.007092
noncoding	29743	C29743T	C	T	1	1	N.9	0.005952
noncoding	29743	C29743A	C	A	1	1	P.1	0.000016
noncoding	29743	C29743T	C	T	1	1	P.1.1	0.000318
noncoding	29743	C29743A	C	A	1	1	P.1.1	0.000318
noncoding	29743	C29743-	C	-	1	1	P.1.11	0.010204
noncoding	29743	C29743G	C	G	1	1	P.1.12	0.000484
noncoding	29743	C29743T	C	T	1	1	P.1.13	0.000898
noncoding	29743	C29743T	C	T	1	1	P.1.17.1	0.000875
noncoding	29743	C29743-	C	-	1	1	P.1.2	0.001156
noncoding	29743	C29743T	C	T	1	1	P.3	0.001595
noncoding	29743	C29743-	C	-	1	1	P.7	0.004367
noncoding	29743	C29743T	C	T	1	1	Q.2	0.000613
noncoding	29743	C29743-	C	-	1	1	Q.3	0.000145
noncoding	29743	C29743-	C	-	1	1	Q.7	0.001111
noncoding	29743	C29743-	C	-	1	1	U.3	0.003861
noncoding	29743	C29743-	C	-	1	1	W.1	0.008696
noncoding	29743	C29743-	C	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.