CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29742 | G29742T | noncoding | G | T | 2543481 | 2543481 | 1 | 29742-29742 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29742 | G29742T | G | T | 2543481 | 2543481 | All | 0.486471 |
noncoding | 29742 | G29742T | G | T | 625272 | 625272 | AY.4 | 0.973188 |
noncoding | 29742 | G29742T | G | T | 242429 | 242429 | B.1.617.2 | 0.912846 |
noncoding | 29742 | G29742T | G | T | 213519 | 213519 | AY.43 | 0.945988 |
noncoding | 29742 | G29742T | G | T | 152074 | 152074 | AY.25 | 0.914698 |
noncoding | 29742 | G29742T | G | T | 146815 | 146815 | AY.103 | 0.911583 |
noncoding | 29742 | G29742T | G | T | 146387 | 146387 | AY.44 | 0.891023 |
noncoding | 29742 | G29742T | G | T | 63321 | 63321 | AY.29 | 0.998801 |
noncoding | 29742 | G29742T | G | T | 62521 | 62521 | AY.3 | 0.621858 |
noncoding | 29742 | G29742T | G | T | 46361 | 46361 | AY.5 | 0.957318 |
noncoding | 29742 | G29742T | G | T | 44434 | 44434 | AY.4.2 | 0.963715 |
noncoding | 29742 | G29742T | G | T | 36319 | 36319 | AY.102 | 0.96296 |
noncoding | 29742 | G29742T | G | T | 35287 | 35287 | AY.39 | 0.871994 |
noncoding | 29742 | G29742T | G | T | 31427 | 31427 | AY.26 | 0.889704 |
noncoding | 29742 | G29742T | G | T | 28539 | 28539 | AY.47 | 0.88771 |
noncoding | 29742 | G29742T | G | T | 26020 | 26020 | AY.120 | 0.967394 |
noncoding | 29742 | G29742T | G | T | 25936 | 25936 | AY.119 | 0.915755 |
noncoding | 29742 | G29742T | G | T | 25428 | 25428 | AY.9.2 | 0.93396 |
noncoding | 29742 | G29742T | G | T | 23926 | 23926 | AY.20 | 0.929887 |
noncoding | 29742 | G29742T | G | T | 23881 | 23881 | AY.6 | 0.982191 |
noncoding | 29742 | G29742T | G | T | 22817 | 22817 | AY.42 | 0.917931 |
noncoding | 29742 | G29742T | G | T | 20208 | 20208 | AY.100 | 0.929702 |
noncoding | 29742 | G29742T | G | T | 19546 | 19546 | AY.98.1 | 0.946629 |
noncoding | 29742 | G29742T | G | T | 16167 | 16167 | AY.75 | 0.905714 |
noncoding | 29742 | G29742T | G | T | 14922 | 14922 | AY.27 | 0.965763 |
noncoding | 29742 | G29742T | G | T | 14534 | 14534 | AY.9 | 0.982425 |
noncoding | 29742 | G29742T | G | T | 14369 | 14369 | AY.118 | 0.9002 |
noncoding | 29742 | G29742T | G | T | 13822 | 13822 | AY.33 | 0.923005 |
noncoding | 29742 | G29742T | G | T | 12706 | 12706 | AY.46.6 | 0.917467 |
noncoding | 29742 | G29742T | G | T | 12307 | 12307 | AY.39.1 | 0.487522 |
noncoding | 29742 | G29742T | G | T | 11992 | 11992 | AY.98 | 0.94731 |
noncoding | 29742 | G29742T | G | T | 11664 | 11664 | AY.23 | 0.813559 |
noncoding | 29742 | G29742T | G | T | 10859 | 10859 | AY.9.1 | 0.909159 |
noncoding | 29742 | G29742T | G | T | 10622 | 10622 | AY.14 | 0.934871 |
noncoding | 29742 | G29742T | G | T | 10339 | 10339 | AY.99.2 | 0.952815 |
noncoding | 29742 | G29742T | G | T | 9800 | 9800 | AY.34 | 0.950257 |
noncoding | 29742 | G29742T | G | T | 9587 | 9587 | AY.117 | 0.81026 |
noncoding | 29742 | G29742T | G | T | 9409 | 9409 | AY.54 | 0.897121 |
noncoding | 29742 | G29742T | G | T | 9069 | 9069 | AY.61 | 0.950231 |
noncoding | 29742 | G29742T | G | T | 8952 | 8952 | AY.4.5 | 0.96227 |
noncoding | 29742 | G29742T | G | T | 8907 | 8907 | AY.46 | 0.92704 |
noncoding | 29742 | G29742T | G | T | 8482 | 8482 | AY.74 | 0.980918 |
noncoding | 29742 | G29742T | G | T | 8175 | 8175 | AY.110 | 0.921231 |
noncoding | 29742 | G29742T | G | T | 7878 | 7878 | AY.45 | 0.958627 |
noncoding | 29742 | G29742T | G | T | 7163 | 7163 | B.1.617.1 | 0.923781 |
noncoding | 29742 | G29742T | G | T | 7013 | 7013 | AY.121 | 0.948985 |
noncoding | 29742 | G29742T | G | T | 6881 | 6881 | AY.7.1 | 0.775499 |
noncoding | 29742 | G29742T | G | T | 6636 | 6636 | AY.3.1 | 0.565777 |
noncoding | 29742 | G29742T | G | T | 6512 | 6512 | AY.4.2.1 | 0.970203 |
noncoding | 29742 | G29742T | G | T | 6410 | 6410 | AY.113 | 0.912715 |
noncoding | 29742 | G29742T | G | T | 6291 | 6291 | AY.36 | 0.932414 |
noncoding | 29742 | G29742T | G | T | 5629 | 5629 | AY.13 | 0.906149 |
noncoding | 29742 | G29742T | G | T | 5602 | 5602 | AY.46.4 | 0.921533 |
noncoding | 29742 | G29742T | G | T | 5326 | 5326 | AY.69 | 0.994213 |
noncoding | 29742 | G29742T | G | T | 5265 | 5265 | AY.111 | 0.964286 |
noncoding | 29742 | G29742T | G | T | 5039 | 5039 | AY.75.1 | 0.908583 |
noncoding | 29742 | G29742T | G | T | 5029 | 5029 | AY.7 | 0.985692 |
noncoding | 29742 | G29742T | G | T | 4925 | 4925 | AY.46.5 | 0.977183 |
noncoding | 29742 | G29742T | G | T | 4511 | 4511 | AY.29.1 | 0.994708 |
noncoding | 29742 | G29742T | G | T | 4409 | 4409 | AY.70 | 0.919308 |
noncoding | 29742 | G29742T | G | T | 4006 | 4006 | AY.35 | 0.933582 |
noncoding | 29742 | G29742T | G | T | 3939 | 3939 | AY.114 | 0.91033 |
noncoding | 29742 | G29742T | G | T | 3614 | 3614 | AY.93 | 0.986892 |
noncoding | 29742 | G29742T | G | T | 3399 | 3399 | AY.5.4 | 0.940509 |
noncoding | 29742 | G29742T | G | T | 3325 | 3325 | AY.53 | 0.956009 |
noncoding | 29742 | G29742T | G | T | 3273 | 3273 | AY.116 | 0.938629 |
noncoding | 29742 | G29742T | G | T | 3187 | 3187 | AY.68 | 0.872434 |
noncoding | 29742 | G29742T | G | T | 3150 | 3150 | AY.41 | 0.925926 |
noncoding | 29742 | G29742T | G | T | 2949 | 2949 | AY.116.1 | 0.918405 |
noncoding | 29742 | G29742T | G | T | 2936 | 2936 | AY.37 | 0.927939 |
noncoding | 29742 | G29742T | G | T | 2881 | 2881 | B.1.1.7 | 0.002579 |
noncoding | 29742 | G29742T | G | T | 2778 | 2778 | AY.106 | 0.930342 |
noncoding | 29742 | G29742T | G | T | 2690 | 2690 | AY.92 | 0.772766 |
noncoding | 29742 | G29742T | G | T | 2640 | 2640 | AY.5.3 | 0.890688 |
noncoding | 29742 | G29742T | G | T | 2534 | 2534 | AY.120.1 | 0.813483 |
noncoding | 29742 | G29742T | G | T | 2532 | 2532 | AY.2 | 0.901709 |
noncoding | 29742 | G29742T | G | T | 2501 | 2501 | AY.63 | 0.967505 |
noncoding | 29742 | G29742T | G | T | 2439 | 2439 | AY.30 | 0.965176 |
noncoding | 29742 | G29742T | G | T | 2388 | 2388 | AY.1 | 0.944994 |
noncoding | 29742 | G29742T | G | T | 2388 | 2388 | AY.12 | 0.754741 |
noncoding | 29742 | G29742T | G | T | 2357 | 2357 | AY.16 | 0.894837 |
noncoding | 29742 | G29742T | G | T | 2270 | 2270 | AY.85 | 0.969671 |
noncoding | 29742 | G29742T | G | T | 2265 | 2265 | AY.4.4 | 0.926759 |
noncoding | 29742 | G29742T | G | T | 2194 | 2194 | AY.24 | 0.94569 |
noncoding | 29742 | G29742T | G | T | 2173 | 2173 | AY.94 | 0.96193 |
noncoding | 29742 | G29742T | G | T | 2041 | 2041 | AY.62 | 0.889325 |
noncoding | 29742 | G29742T | G | T | 2023 | 2023 | AY.107 | 0.942684 |
noncoding | 29742 | G29742T | G | T | 1964 | 1964 | AY.71 | 0.933017 |
noncoding | 29742 | G29742T | G | T | 1949 | 1949 | AY.84 | 0.852581 |
noncoding | 29742 | G29742T | G | T | 1914 | 1914 | AY.48 | 0.890233 |
noncoding | 29742 | G29742T | G | T | 1875 | 1875 | AY.67 | 0.870474 |
noncoding | 29742 | G29742T | G | T | 1804 | 1804 | AY.10 | 0.956015 |
noncoding | 29742 | G29742T | G | T | 1799 | 1799 | AY.34.1 | 0.917389 |
noncoding | 29742 | G29742T | G | T | 1797 | 1797 | AY.16.1 | 0.844455 |
noncoding | 29742 | G29742T | G | T | 1779 | 1779 | AY.101 | 0.872487 |
noncoding | 29742 | G29742T | G | T | 1773 | 1773 | AY.32 | 0.944089 |
noncoding | 29742 | G29742T | G | T | 1754 | 1754 | AY.59 | 0.929025 |
noncoding | 29742 | G29742T | G | T | 1687 | 1687 | AY.65 | 0.899254 |
noncoding | 29742 | G29742T | G | T | 1645 | 1645 | AY.7.2 | 0.920022 |
noncoding | 29742 | G29742T | G | T | 1637 | 1637 | AY.8 | 0.992121 |
noncoding | 29742 | G29742T | G | T | 1535 | 1535 | AY.64 | 0.91369 |
noncoding | 29742 | G29742T | G | T | 1533 | 1533 | AY.23.1 | 0.639816 |
noncoding | 29742 | G29742T | G | T | 1464 | 1464 | AY.120.2.1 | 0.729447 |
noncoding | 29742 | G29742T | G | T | 1446 | 1446 | B.1 | 0.013245 |
noncoding | 29742 | G29742T | G | T | 1432 | 1432 | AY.90 | 0.980151 |
noncoding | 29742 | G29742T | G | T | 1420 | 1420 | AY.57 | 0.931759 |
noncoding | 29742 | G29742T | G | T | 1415 | 1415 | AY.46.2 | 0.898983 |
noncoding | 29742 | G29742T | G | T | 1315 | 1315 | AY.105 | 0.845659 |
noncoding | 29742 | G29742T | G | T | 1286 | 1286 | AY.73 | 0.855622 |
noncoding | 29742 | G29742T | G | T | 1284 | 1284 | AY.39.1.1 | 0.930435 |
noncoding | 29742 | G29742T | G | T | 1283 | 1283 | AY.91 | 0.93718 |
noncoding | 29742 | G29742T | G | T | 1276 | 1276 | AY.4.1 | 0.941003 |
noncoding | 29742 | G29742T | G | T | 1275 | 1275 | AY.109 | 0.943047 |
noncoding | 29742 | G29742T | G | T | 1239 | 1239 | AY.50 | 0.990408 |
noncoding | 29742 | G29742T | G | T | 1173 | 1173 | AY.87 | 0.976686 |
noncoding | 29742 | G29742T | G | T | 1159 | 1159 | AY.86 | 0.961826 |
noncoding | 29742 | G29742T | G | T | 1139 | 1139 | AY.4.3 | 0.958754 |
noncoding | 29742 | G29742T | G | T | 1139 | 1139 | AY.95 | 0.866819 |
noncoding | 29742 | G29742T | G | T | 1052 | 1052 | AY.88 | 0.93015 |
noncoding | 29742 | G29742T | G | T | 1038 | 1038 | AY.46.3 | 0.969188 |
noncoding | 29742 | G29742T | G | T | 1030 | 1030 | AY.55 | 0.944954 |
noncoding | 29742 | G29742T | G | T | 1019 | 1019 | AY.51 | 0.926364 |
noncoding | 29742 | G29742T | G | T | 998 | 998 | AY.52 | 0.812704 |
noncoding | 29742 | G29742T | G | T | 970 | 970 | AY.60 | 0.909944 |
noncoding | 29742 | G29742T | G | T | 942 | 942 | AY.40 | 0.90839 |
noncoding | 29742 | G29742T | G | T | 912 | 912 | AY.46.1 | 0.936345 |
noncoding | 29742 | G29742T | G | T | 879 | 879 | AY.66 | 0.940107 |
noncoding | 29742 | G29742T | G | T | 874 | 874 | AY.80 | 0.986456 |
noncoding | 29742 | G29742T | G | T | 842 | 842 | AY.99 | 0.883526 |
noncoding | 29742 | G29742T | G | T | 836 | 836 | AY.77 | 0.942503 |
noncoding | 29742 | G29742T | G | T | 827 | 827 | AY.108 | 0.911797 |
noncoding | 29742 | G29742T | G | T | 825 | 825 | AY.19 | 0.940707 |
noncoding | 29742 | G29742T | G | T | 809 | 809 | AY.58 | 0.73412 |
noncoding | 29742 | G29742T | G | T | 795 | 795 | AY.79 | 0.96247 |
noncoding | 29742 | G29742T | G | T | 733 | 733 | AY.120.2 | 0.942159 |
noncoding | 29742 | G29742T | G | T | 681 | 681 | AY.82 | 0.924016 |
noncoding | 29742 | G29742T | G | T | 673 | 673 | AY.72 | 0.915646 |
noncoding | 29742 | G29742T | G | T | 636 | 636 | AY.11 | 0.851406 |
noncoding | 29742 | G29742T | G | T | 629 | 629 | AY.39.2 | 0.969183 |
noncoding | 29742 | G29742T | G | T | 623 | 623 | AY.78 | 0.959938 |
noncoding | 29742 | G29742T | G | T | 622 | 622 | AY.99.1 | 0.965839 |
noncoding | 29742 | G29742T | G | T | 592 | 592 | AY.56 | 0.950241 |
noncoding | 29742 | G29742T | G | T | 556 | 556 | AY.83 | 0.958621 |
noncoding | 29742 | G29742T | G | T | 540 | 540 | AY.97 | 0.918367 |
noncoding | 29742 | G29742T | G | T | 515 | 515 | AY.28 | 0.973535 |
noncoding | 29742 | G29742T | G | T | 509 | 509 | AY.21 | 0.965844 |
noncoding | 29742 | G29742T | G | T | 506 | 506 | AY.9.2.1 | 1 |
noncoding | 29742 | G29742T | G | T | 479 | 479 | AY.104 | 0.950397 |
noncoding | 29742 | G29742T | G | T | 470 | 470 | AY.22 | 0.983264 |
noncoding | 29742 | G29742T | G | T | 445 | 445 | AY.81 | 0.886454 |
noncoding | 29742 | G29742T | G | T | 441 | 441 | AY.15 | 0.98 |
noncoding | 29742 | G29742T | G | T | 431 | 431 | AY.38 | 0.215177 |
noncoding | 29742 | G29742T | G | T | 429 | 429 | AY.96 | 0.890041 |
noncoding | 29742 | G29742T | G | T | 420 | 420 | B.4 | 0.927152 |
noncoding | 29742 | G29742T | G | T | 396 | 396 | AY.5.2 | 0.975369 |
noncoding | 29742 | G29742T | G | T | 330 | 330 | B.1.2 | 0.002906 |
noncoding | 29742 | G29742T | G | T | 309 | 309 | B.1.617.3 | 0.922388 |
noncoding | 29742 | G29742T | G | T | 278 | 278 | AY.49 | 0.888179 |
noncoding | 29742 | G29742T | G | T | 276 | 276 | B.1.1 | 0.005007 |
noncoding | 29742 | G29742T | G | T | 261 | 261 | AY.5.1 | 0.981203 |
noncoding | 29742 | G29742T | G | T | 237 | 237 | AY.91.1 | 0.963415 |
noncoding | 29742 | G29742T | G | T | 217 | 217 | B.1.1.214 | 0.012034 |
noncoding | 29742 | G29742T | G | T | 205 | 205 | B.1.177 | 0.002699 |
noncoding | 29742 | G29742T | G | T | 203 | 203 | AY.76 | 0.980676 |
noncoding | 29742 | G29742T | G | T | 201 | 201 | P.1 | 0.003167 |
noncoding | 29742 | G29742T | G | T | 200 | 200 | AY.89 | 0.980392 |
noncoding | 29742 | G29742T | G | T | 192 | 192 | B.1.177.60 | 0.04194 |
noncoding | 29742 | G29742T | G | T | 188 | 188 | AY.115 | 0.979167 |
noncoding | 29742 | G29742T | G | T | 119 | 119 | AY.17 | 0.97541 |
noncoding | 29742 | G29742T | G | T | 113 | 113 | B.1.160.10 | 0.91129 |
noncoding | 29742 | G29742T | G | T | 98 | 98 | B.1.495 | 0.890909 |
noncoding | 29742 | G29742T | G | T | 95 | 95 | AY.18 | 0.959596 |
noncoding | 29742 | G29742T | G | T | 94 | 94 | B.4.7 | 0.949495 |
noncoding | 29742 | G29742T | G | T | 89 | 89 | B | 0.011375 |
noncoding | 29742 | G29742T | G | T | 78 | 78 | B.4.5 | 0.928571 |
noncoding | 29742 | G29742T | G | T | 77 | 77 | P.1.1 | 0.02446 |
noncoding | 29742 | G29742T | G | T | 60 | 60 | B.1.1.39 | 0.030581 |
noncoding | 29742 | G29742T | G | T | 59 | 59 | B.1.596 | 0.005141 |
noncoding | 29742 | G29742T | G | T | 58 | 58 | B.1.1.222 | 0.011832 |
noncoding | 29742 | G29742T | G | T | 58 | 58 | B.1.1.37 | 0.011186 |
noncoding | 29742 | G29742T | G | T | 52 | 52 | B.1.1.519 | 0.002065 |
noncoding | 29742 | G29742T | G | T | 51 | 51 | AY.31 | 0.944444 |
noncoding | 29742 | G29742T | G | T | 50 | 50 | B.4.4 | 0.943396 |
noncoding | 29742 | G29742T | G | T | 49 | 49 | P.1.14 | 0.002342 |
noncoding | 29742 | G29742T | G | T | 47 | 47 | B.1.429 | 0.001106 |
noncoding | 29742 | G29742T | G | T | 45 | 45 | B.1.177.4 | 0.009498 |
noncoding | 29742 | G29742T | G | T | 45 | 45 | B.1.214 | 0.164835 |
noncoding | 29742 | G29742T | G | T | 41 | 41 | B.1.160 | 0.001279 |
noncoding | 29742 | G29742T | G | T | 37 | 37 | B.1.351 | 0.0011 |
noncoding | 29742 | G29742T | G | T | 37 | 37 | B.1.526 | 0.00087 |
noncoding | 29742 | G29742T | G | T | 33 | 33 | B.1.427 | 0.001666 |
noncoding | 29742 | G29742T | G | T | 32 | 32 | B.1.221 | 0.002273 |
noncoding | 29742 | G29742T | G | T | 32 | 32 | B.1.525 | 0.003621 |
noncoding | 29742 | G29742T | G | T | 32 | 32 | B.4.6 | 0.533333 |
noncoding | 29742 | G29742T | G | T | 30 | 30 | N.5 | 0.053004 |
noncoding | 29742 | G29742T | G | T | 29 | 29 | B.1.36.29 | 0.015003 |
noncoding | 29742 | G29742T | G | T | 29 | 29 | B.1.576 | 0.026292 |
noncoding | 29742 | G29742T | G | T | 29 | 29 | P.2 | 0.005412 |
noncoding | 29742 | G29742T | G | T | 28 | 28 | B.1.621 | 0.002479 |
noncoding | 29742 | G29742T | G | T | 27 | 27 | B.1.1.318 | 0.008147 |
noncoding | 29742 | G29742T | G | T | 26 | 26 | B.4.1 | 0.490566 |
noncoding | 29742 | G29742T | G | T | 25 | 25 | B.1.466.2 | 0.009781 |
noncoding | 29742 | G29742T | G | T | 23 | 23 | B.1.243 | 0.0016 |
noncoding | 29742 | G29742T | G | T | 22 | 22 | B.1.551 | 0.028387 |
noncoding | 29742 | G29742T | G | T | 21 | 21 | A | 0.008127 |
noncoding | 29742 | G29742T | G | T | 18 | 18 | B.1.157 | 0.053731 |
noncoding | 29742 | G29742T | G | T | 18 | 18 | B.1.351.2 | 0.005446 |
noncoding | 29742 | G29742T | G | T | 17 | 17 | B.1.239 | 0.020757 |
noncoding | 29742 | G29742T | G | T | 17 | 17 | C.37 | 0.001973 |
noncoding | 29742 | G29742T | G | T | 16 | 16 | B.1.258 | 0.001065 |
noncoding | 29742 | G29742T | G | T | 15 | 15 | B.1.258.17 | 0.00156 |
noncoding | 29742 | G29742T | G | T | 15 | 15 | B.1.311 | 0.004119 |
noncoding | 29742 | G29742T | G | T | 15 | 15 | C.18 | 0.03886 |
noncoding | 29742 | G29742T | G | T | 15 | 15 | P.1.12 | 0.00726 |
noncoding | 29742 | G29742T | G | T | 14 | 14 | B.1.623 | 0.007511 |
noncoding | 29742 | G29742T | G | T | 14 | 14 | B.4.2 | 0.933333 |
noncoding | 29742 | G29742T | G | T | 13 | 13 | B.1.517 | 0.005551 |
noncoding | 29742 | G29742T | G | T | 13 | 13 | B.4.8 | 0.928571 |
noncoding | 29742 | G29742T | G | T | 12 | 12 | B.1.177.73 | 0.006795 |
noncoding | 29742 | G29742T | G | T | 12 | 12 | B.1.234 | 0.001583 |
noncoding | 29742 | G29742T | G | T | 12 | 12 | B.1.619.1 | 0.007697 |
noncoding | 29742 | G29742T | G | T | 11 | 11 | B.1.214.2 | 0.006595 |
noncoding | 29742 | G29742T | G | T | 11 | 11 | P.1.13 | 0.009883 |
noncoding | 29742 | G29742T | G | T | 10 | 10 | B.1.320 | 0.012453 |
noncoding | 29742 | G29742T | G | T | 10 | 10 | B.1.637 | 0.000731 |
noncoding | 29742 | G29742T | G | T | 10 | 10 | P.1.17 | 0.001618 |
noncoding | 29742 | G29742T | G | T | 9 | 9 | B.1.1.282 | 0.104651 |
noncoding | 29742 | G29742T | G | T | 9 | 9 | B.1.1.448 | 0.018293 |
noncoding | 29742 | G29742T | G | T | 9 | 9 | B.1.149 | 0.030822 |
noncoding | 29742 | G29742T | G | T | 9 | 9 | B.1.375 | 0.007377 |
noncoding | 29742 | G29742T | G | T | 9 | 9 | B.1.426 | 0.009082 |
noncoding | 29742 | G29742T | G | T | 8 | 8 | B.1.1.263 | 0.012461 |
noncoding | 29742 | G29742T | G | T | 8 | 8 | B.1.36 | 0.001167 |
noncoding | 29742 | G29742T | G | T | 8 | 8 | B.1.36.18 | 0.003361 |
noncoding | 29742 | G29742T | G | T | 8 | 8 | Q.1 | 0.001011 |
noncoding | 29742 | G29742T | G | T | 7 | 7 | B.1.1.1 | 0.002287 |
noncoding | 29742 | G29742T | G | T | 7 | 7 | B.1.1.28 | 0.002179 |
noncoding | 29742 | G29742T | G | T | 7 | 7 | B.1.546 | 0.025926 |
noncoding | 29742 | G29742T | G | T | 7 | 7 | B.1.595 | 0.001827 |
noncoding | 29742 | G29742T | G | T | 7 | 7 | B.1.628 | 0.002467 |
noncoding | 29742 | G29742T | G | T | 6 | 6 | B.1.177.43 | 0.008863 |
noncoding | 29742 | G29742T | G | T | 6 | 6 | B.1.400 | 0.002574 |
noncoding | 29742 | G29742T | G | T | 6 | 6 | B.1.575 | 0.00182 |
noncoding | 29742 | G29742T | G | T | 6 | 6 | B.40 | 0.002186 |
noncoding | 29742 | G29742T | G | T | 6 | 6 | B.6 | 0.00546 |
noncoding | 29742 | G29742T | G | T | 6 | 6 | P.1.2 | 0.006936 |
noncoding | 29742 | G29742T | G | T | 6 | 6 | P.1.7 | 0.001916 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | B.1.1.198 | 0.007342 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | B.1.1.25 | 0.002843 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | B.1.1.526 | 0.01773 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | B.1.438 | 0.03268 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | B.1.597 | 0.023148 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | C.1 | 0.011962 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | C.36.3 | 0.002836 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | D.2 | 0.000375 |
noncoding | 29742 | G29742T | G | T | 5 | 5 | P.1.17.1 | 0.004374 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | 0.222222 | |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.1.306 | 0.001754 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.1.348 | 0.003185 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.1.53 | 0.054795 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.1.70 | 0.001364 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.177.21 | 0.000306 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.177.82 | 0.001909 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.240 | 0.000862 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.36.31 | 0.007005 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.36.7 | 0.016 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.416 | 0.005076 |
noncoding | 29742 | G29742T | G | T | 4 | 4 | B.1.509 | 0.003463 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.1.284 | 0.000322 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.1.50 | 0.002037 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.111 | 0.003525 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.170 | 0.012931 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.177.18 | 0.00348 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.177.86 | 0.00055 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.206 | 0.002447 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.260 | 0.010033 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.36.8 | 0.003 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.362 | 0.004622 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.420 | 0.03125 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.433 | 0.009585 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.435 | 0.034091 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.497 | 0.000944 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.604 | 0.051724 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.609 | 0.001438 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.621.1 | 0.001517 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.1.91 | 0.006224 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | B.55 | 0.00885 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | C.36 | 0.002732 |
noncoding | 29742 | G29742T | G | T | 3 | 3 | P.1.15 | 0.000697 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | AU.3 | 0.004219 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.10 | 0.00223 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.176 | 0.000879 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.220 | 0.003717 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.258 | 0.006515 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.301 | 0.002358 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.317 | 0.000823 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.373 | 0.047619 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.398 | 0.006452 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.409 | 0.005666 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.434 | 0.000697 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.464 | 0.002946 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.487 | 0.011173 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.523 | 0.003125 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.1.528 | 0.009615 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.110.3 | 0.001437 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.158 | 0.047619 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.160.30 | 0.005952 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.177.19 | 0.002861 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.177.3 | 0.015267 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.177.32 | 0.002699 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.177.54 | 0.001213 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.177.57 | 0.000562 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.177.62 | 0.002384 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.177.77 | 0.001452 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.218 | 0.010309 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.236 | 0.004107 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.247 | 0.029851 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.258.11 | 0.000793 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.265 | 0.002541 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.326 | 0.015152 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.333 | 0.021053 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.349 | 0.00143 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.390 | 0.021277 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.432 | 0.022472 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.469 | 0.00722 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.470 | 0.002809 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.485 | 0.029851 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.499 | 0.002101 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.561 | 0.000794 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.580 | 0.00813 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.581 | 0.018868 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.619 | 0.001742 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.632 | 0.013423 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | B.1.635 | 0.035088 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | C.1.2 | 0.008511 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | C.14 | 0.008658 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | P.1.16 | 0.000748 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | P.1.8 | 0.009569 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | Q.4 | 0.00091 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | Q.8 | 0.00033 |
noncoding | 29742 | G29742T | G | T | 2 | 2 | R.1 | 0.00018 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | A.1 | 0.000282 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | A.2 | 0.000662 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | A.2.5 | 0.000499 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | A.2.5.2 | 0.001572 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | AT.1 | 0.005128 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | AU.2 | 0.002421 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | AZ.3 | 0.00152 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.117 | 0.009709 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.121 | 0.002427 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.153 | 0.001095 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.157 | 0.000913 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.166 | 0.033333 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.203 | 0.016949 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.210 | 0.005714 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.221 | 0.010101 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.226 | 0.005814 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.241 | 0.00207 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.294 | 0.001266 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.312 | 0.001912 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.342 | 0.0625 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.368 | 0.003086 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.402 | 0.011111 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.411 | 0.014706 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.412 | 0.007634 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.416 | 0.000905 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.417 | 0.002703 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.420 | 0.001006 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.421 | 0.030303 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.512 | 0.028571 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.525 | 0.005464 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.63 | 0.000386 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.67 | 0.004566 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.1.86 | 0.035714 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.104 | 0.00369 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.160.32 | 0.004292 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.177.20 | 0.001517 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.177.42 | 0.000894 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.177.47 | 0.012987 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.177.83 | 0.001481 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.177.84 | 0.006667 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.199 | 0.004132 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.219 | 0.009434 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.221.1 | 0.002907 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.301 | 0.005917 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.319 | 0.003049 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.323 | 0.020833 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.325 | 0.006897 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.335 | 0.010309 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.340 | 0.004292 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.341 | 0.022727 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.351.5 | 0.0006 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.36.10 | 0.004785 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.36.16 | 0.001425 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.36.19 | 0.009259 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.36.35 | 0.002604 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.372 | 0.010989 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.385 | 0.010638 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.405 | 0.012346 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.422 | 0.000812 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.425 | 0.002994 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.428 | 0.00102 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.438.4 | 0.021277 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.439 | 0.005917 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.441 | 0.009615 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.456 | 0.003268 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.474 | 0.001901 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.476 | 0.1 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.487 | 0.019608 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.505 | 0.004386 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.530 | 0.007143 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.533 | 0.009615 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.544 | 0.006024 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.545 | 0.014493 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.568 | 0.001111 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.575.1 | 0.002439 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.587 | 0.001898 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.588 | 0.00091 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.593 | 0.01087 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.599 | 0.00365 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.612 | 0.002653 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.627 | 0.00202 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.631 | 0.003367 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | B.1.93 | 0.000934 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | C.16 | 0.00106 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | C.36.3.1 | 0.002717 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | P.3 | 0.001595 |
noncoding | 29742 | G29742T | G | T | 1 | 1 | W.2 | 0.004831 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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