CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29742 & Codon = A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29742G29742AnoncodingGA62396239129742-29742

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29742G29742AGA62396239All0.001193
noncoding29742G29742AGA13041304A.23.10.91831
noncoding29742G29742AGA10881088A0.421053
noncoding29742G29742AGA592592B.1.1.70.00053
noncoding29742G29742AGA523523A.270.865894
noncoding29742G29742AGA360360A.280.952381
noncoding29742G29742AGA337337A.210.933518
noncoding29742G29742AGA214214P.10.003371
noncoding29742G29742AGA186186A.290.989362
noncoding29742G29742AGA172172B.1.20.001515
noncoding29742G29742AGA160160B.10.001466
noncoding29742G29742AGA9898A.190.924528
noncoding29742G29742AGA9191A.230.957895
noncoding29742G29742AGA8080B.1.177.40.016885
noncoding29742G29742AGA7878A.41
noncoding29742G29742AGA7171AY.420.002856
noncoding29742G29742AGA6363A.151
noncoding29742G29742AGA5959B.1.4290.001388
noncoding29742G29742AGA5858B.1.1770.000764
noncoding29742G29742AGA5050B0.006391
noncoding29742G29742AGA4949A.250.890909
noncoding29742G29742AGA4040B.1.1.3040.11236
noncoding29742G29742AGA3838B.1.10.000689
noncoding29742G29742AGA2929B.1.5250.003282
noncoding29742G29742AGA2424P.1.120.011617
noncoding29742G29742AGA1818A.180.9
noncoding29742G29742AGA1717A.111
noncoding29742G29742AGA1717A.90.772727
noncoding29742G29742AGA1616B.1.4710.043716
noncoding29742G29742AGA1616B.1.5710.15534
noncoding29742G29742AGA1515P.30.023923
noncoding29742G29742AGA1414A.220.933333
noncoding29742G29742AGA1313A.261
noncoding29742G29742AGA1313B.1.3510.000386
noncoding29742G29742AGA1010B.1.1.2160.008905
noncoding29742G29742AGA1010B.1.2210.00071
noncoding29742G29742AGA1010B.1.2400.002156
noncoding29742G29742AGA1010B.1.360.001459
noncoding29742G29742AGA1010B.1.36.240.061728
noncoding29742G29742AGA99AY.30.00009
noncoding29742G29742AGA99C.36.30.005105
noncoding29742G29742AGA88B.1.617.20.00003
noncoding29742G29742AGA77A.240.5
noncoding29742G29742AGA77B.1.1.2630.010903
noncoding29742G29742AGA77B.1.1.5190.000278
noncoding29742G29742AGA77B.1.6210.00062
noncoding29742G29742AGA66A.121
noncoding29742G29742AGA66A.300.857143
noncoding29742G29742AGA66B.1.1570.01791
noncoding29742G29742AGA66B.1.177.730.003398
noncoding29742G29742AGA66B.1.2580.000399
noncoding29742G29742AGA66B.1.5260.000141
noncoding29742G29742AGA55AY.690.000933
noncoding29742G29742AGA55B.1.1600.000156
noncoding29742G29742AGA55B.400.001821
noncoding29742G29742AGA44B.1.1390.002933
noncoding29742G29742AGA44B.1.177.810.000757
noncoding29742G29742AGA44B.1.2600.013378
noncoding29742G29742AGA44B.1.5950.001044
noncoding29742G29742AGA33A.20.001985
noncoding29742G29742AGA33A.2.40.010101
noncoding29742G29742AGA33AY.40.000005
noncoding29742G29742AGA33AY.440.000018
noncoding29742G29742AGA33AY.46.20.001906
noncoding29742G29742AGA33B.1.1.10.00098
noncoding29742G29742AGA33B.1.1.3680.009259
noncoding29742G29742AGA33B.1.1.4070.125
noncoding29742G29742AGA33B.1.110.30.002155
noncoding29742G29742AGA33B.1.177.860.00055
noncoding29742G29742AGA33B.1.258.170.000312
noncoding29742G29742AGA33B.1.3750.002459
noncoding29742G29742AGA33B.1.3990.005803
noncoding29742G29742AGA33B.550.00885
noncoding29742G29742AGA33P.1.140.000143
noncoding29742G29742AGA33P.20.00056
noncoding29742G29742AGA22A.10.000564
noncoding29742G29742AGA22A.70.111111
noncoding29742G29742AGA22AY.1020.000053
noncoding29742G29742AGA22AY.200.000078
noncoding29742G29742AGA22AY.250.000012
noncoding29742G29742AGA22AY.46.40.000329
noncoding29742G29742AGA22B.1.1.2140.000111
noncoding29742G29742AGA22B.1.1.390.001019
noncoding29742G29742AGA22B.1.1130.03125
noncoding29742G29742AGA22B.1.2140.007326
noncoding29742G29742AGA22B.1.2650.002541
noncoding29742G29742AGA22B.1.4280.002041
noncoding29742G29742AGA22B.1.4630.016129
noncoding29742G29742AGA22B.1.466.20.000782
noncoding29742G29742AGA22B.1.5580.009132
noncoding29742G29742AGA22B.1.6370.000146
noncoding29742G29742AGA22C.360.001821
noncoding29742G29742AGA22C.370.000232
noncoding29742G29742AGA22P.1.10.000635
noncoding29742G29742AGA22P.1.70.000639
noncoding29742G29742AGA22Q.10.000253
noncoding29742G29742AGA11AA.10.007246
noncoding29742G29742AGA11AL.10.012987
noncoding29742G29742AGA11AY.1030.000006
noncoding29742G29742AGA11AY.290.000016
noncoding29742G29742AGA11AY.34.10.00051
noncoding29742G29742AGA11AY.430.000004
noncoding29742G29742AGA11AY.460.000104
noncoding29742G29742AGA11AY.50.000021
noncoding29742G29742AGA11AY.540.000095
noncoding29742G29742AGA11AY.910.00073
noncoding29742G29742AGA11B.1.1.2290.005747
noncoding29742G29742AGA11B.1.1.2770.000759
noncoding29742G29742AGA11B.1.1.3170.000412
noncoding29742G29742AGA11B.1.1.3180.000302
noncoding29742G29742AGA11B.1.1.3260.001761
noncoding29742G29742AGA11B.1.1.3390.010526
noncoding29742G29742AGA11B.1.1.3720.000689
noncoding29742G29742AGA11B.1.1.4090.002833
noncoding29742G29742AGA11B.1.1.4200.001006
noncoding29742G29742AGA11B.1.1.4330.001425
noncoding29742G29742AGA11B.1.1.4350.034483
noncoding29742G29742AGA11B.1.1.4480.002033
noncoding29742G29742AGA11B.1.1470.000756
noncoding29742G29742AGA11B.1.160.160.000929
noncoding29742G29742AGA11B.1.160.330.004425
noncoding29742G29742AGA11B.1.177.100.000878
noncoding29742G29742AGA11B.1.177.460.000918
noncoding29742G29742AGA11B.1.177.570.000281
noncoding29742G29742AGA11B.1.177.70.000165
noncoding29742G29742AGA11B.1.2100.002132
noncoding29742G29742AGA11B.1.2340.000132
noncoding29742G29742AGA11B.1.2430.00007
noncoding29742G29742AGA11B.1.2470.014925
noncoding29742G29742AGA11B.1.258.120.007874
noncoding29742G29742AGA11B.1.2800.007143
noncoding29742G29742AGA11B.1.3110.000275
noncoding29742G29742AGA11B.1.3360.002439
noncoding29742G29742AGA11B.1.3460.001311
noncoding29742G29742AGA11B.1.351.50.0006
noncoding29742G29742AGA11B.1.36.170.000494
noncoding29742G29742AGA11B.1.36.290.000517
noncoding29742G29742AGA11B.1.36.310.001751
noncoding29742G29742AGA11B.1.36.360.000602
noncoding29742G29742AGA11B.1.36.80.001
noncoding29742G29742AGA11B.1.3620.001541
noncoding29742G29742AGA11B.1.3670.000792
noncoding29742G29742AGA11B.1.3930.028571
noncoding29742G29742AGA11B.1.3970.004854
noncoding29742G29742AGA11B.1.4270.00005
noncoding29742G29742AGA11B.1.438.10.000107
noncoding29742G29742AGA11B.1.4620.007246
noncoding29742G29742AGA11B.1.4970.000315
noncoding29742G29742AGA11B.1.4990.00105
noncoding29742G29742AGA11B.1.5170.000427
noncoding29742G29742AGA11B.1.5300.007143
noncoding29742G29742AGA11B.1.5600.00463
noncoding29742G29742AGA11B.1.5610.000397
noncoding29742G29742AGA11B.1.5890.007576
noncoding29742G29742AGA11B.1.617.10.000129
noncoding29742G29742AGA11B.1.910.002075
noncoding29742G29742AGA11B.30.000831
noncoding29742G29742AGA11B.40.002208
noncoding29742G29742AGA11C.140.004329
noncoding29742G29742AGA11C.350.000774
noncoding29742G29742AGA11C.36.3.10.002717
noncoding29742G29742AGA11C.37.10.002618
noncoding29742G29742AGA11C.390.018868
noncoding29742G29742AGA11C.60.037037
noncoding29742G29742AGA11N.40.004255
noncoding29742G29742AGA11P.1.100.000269
noncoding29742G29742AGA11P.1.17.10.000875
noncoding29742G29742AGA11P.1.80.004785
noncoding29742G29742AGA11Q.70.001111
noncoding29742G29742AGA11Q.80.000165
noncoding29742G29742AGA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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