CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29737 | G29737T | noncoding | G | T | 11588 | 11588 | 1 | 29737-29737 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29737 | G29737T | G | T | 11588 | 11588 | All | 0.002216 |
noncoding | 29737 | G29737T | G | T | 4932 | 4932 | AY.4 | 0.007676 |
noncoding | 29737 | G29737T | G | T | 1961 | 1961 | AY.20 | 0.076215 |
noncoding | 29737 | G29737T | G | T | 1033 | 1033 | B.1.1.7 | 0.000925 |
noncoding | 29737 | G29737T | G | T | 483 | 483 | B.1.526 | 0.011353 |
noncoding | 29737 | G29737T | G | T | 335 | 335 | B.1.617.2 | 0.001261 |
noncoding | 29737 | G29737T | G | T | 277 | 277 | AY.43 | 0.001227 |
noncoding | 29737 | G29737T | G | T | 260 | 260 | AY.113 | 0.037021 |
noncoding | 29737 | G29737T | G | T | 173 | 173 | AY.29 | 0.002729 |
noncoding | 29737 | G29737T | G | T | 111 | 111 | B.1.2 | 0.000977 |
noncoding | 29737 | G29737T | G | T | 107 | 107 | AY.5 | 0.002209 |
noncoding | 29737 | G29737T | G | T | 85 | 85 | AY.117 | 0.007184 |
noncoding | 29737 | G29737T | G | T | 83 | 83 | B.1.243 | 0.005776 |
noncoding | 29737 | G29737T | G | T | 82 | 82 | AY.103 | 0.000509 |
noncoding | 29737 | G29737T | G | T | 81 | 81 | B.1.1.487 | 0.452514 |
noncoding | 29737 | G29737T | G | T | 66 | 66 | B.1.1.306 | 0.028935 |
noncoding | 29737 | G29737T | G | T | 63 | 63 | AY.34 | 0.006109 |
noncoding | 29737 | G29737T | G | T | 62 | 62 | AY.44 | 0.000377 |
noncoding | 29737 | G29737T | G | T | 57 | 57 | AY.46 | 0.005933 |
noncoding | 29737 | G29737T | G | T | 53 | 53 | B.1 | 0.000485 |
noncoding | 29737 | G29737T | G | T | 50 | 50 | B.1.429 | 0.001176 |
noncoding | 29737 | G29737T | G | T | 45 | 45 | AY.4.2 | 0.000976 |
noncoding | 29737 | G29737T | G | T | 44 | 44 | AY.25 | 0.000265 |
noncoding | 29737 | G29737T | G | T | 42 | 42 | AY.102 | 0.001114 |
noncoding | 29737 | G29737T | G | T | 39 | 39 | P.1 | 0.000614 |
noncoding | 29737 | G29737T | G | T | 37 | 37 | B.1.561 | 0.014688 |
noncoding | 29737 | G29737T | G | T | 36 | 36 | AY.42 | 0.001448 |
noncoding | 29737 | G29737T | G | T | 33 | 33 | AY.26 | 0.000934 |
noncoding | 29737 | G29737T | G | T | 32 | 32 | AY.39 | 0.000791 |
noncoding | 29737 | G29737T | G | T | 32 | 32 | B.1.177 | 0.000421 |
noncoding | 29737 | G29737T | G | T | 30 | 30 | B.1.1.318 | 0.009053 |
noncoding | 29737 | G29737T | G | T | 29 | 29 | AY.99.2 | 0.002673 |
noncoding | 29737 | G29737T | G | T | 29 | 29 | B.1.1.519 | 0.001152 |
noncoding | 29737 | G29737T | G | T | 29 | 29 | P.1.14 | 0.001386 |
noncoding | 29737 | G29737T | G | T | 27 | 27 | AY.47 | 0.00084 |
noncoding | 29737 | G29737T | G | T | 25 | 25 | AY.3 | 0.000249 |
noncoding | 29737 | G29737T | G | T | 24 | 24 | B.1.1 | 0.000435 |
noncoding | 29737 | G29737T | G | T | 23 | 23 | AY.4.2.1 | 0.003427 |
noncoding | 29737 | G29737T | G | T | 23 | 23 | AY.9.2 | 0.000845 |
noncoding | 29737 | G29737T | G | T | 23 | 23 | B.1.177.60 | 0.005024 |
noncoding | 29737 | G29737T | G | T | 21 | 21 | P.1.12 | 0.010165 |
noncoding | 29737 | G29737T | G | T | 17 | 17 | AY.100 | 0.000782 |
noncoding | 29737 | G29737T | G | T | 16 | 16 | AY.36 | 0.002371 |
noncoding | 29737 | G29737T | G | T | 16 | 16 | B.1.1.28 | 0.00498 |
noncoding | 29737 | G29737T | G | T | 16 | 16 | B.1.517 | 0.006832 |
noncoding | 29737 | G29737T | G | T | 14 | 14 | AY.116 | 0.004015 |
noncoding | 29737 | G29737T | G | T | 14 | 14 | AY.119 | 0.000494 |
noncoding | 29737 | G29737T | G | T | 14 | 14 | B.1.1.222 | 0.002856 |
noncoding | 29737 | G29737T | G | T | 13 | 13 | AY.111 | 0.002381 |
noncoding | 29737 | G29737T | G | T | 13 | 13 | B.1.1.284 | 0.001396 |
noncoding | 29737 | G29737T | G | T | 12 | 12 | AY.27 | 0.000777 |
noncoding | 29737 | G29737T | G | T | 12 | 12 | AY.33 | 0.000801 |
noncoding | 29737 | G29737T | G | T | 12 | 12 | B.1.351 | 0.000357 |
noncoding | 29737 | G29737T | G | T | 12 | 12 | B.1.427 | 0.000606 |
noncoding | 29737 | G29737T | G | T | 11 | 11 | B.1.160 | 0.000343 |
noncoding | 29737 | G29737T | G | T | 10 | 10 | AY.120 | 0.000372 |
noncoding | 29737 | G29737T | G | T | 10 | 10 | B.1.1.253 | 0.025063 |
noncoding | 29737 | G29737T | G | T | 10 | 10 | B.1.128 | 0.006353 |
noncoding | 29737 | G29737T | G | T | 10 | 10 | B.1.177.32 | 0.013495 |
noncoding | 29737 | G29737T | G | T | 9 | 9 | AY.108 | 0.009923 |
noncoding | 29737 | G29737T | G | T | 9 | 9 | AY.46.6 | 0.00065 |
noncoding | 29737 | G29737T | G | T | 9 | 9 | AY.6 | 0.00037 |
noncoding | 29737 | G29737T | G | T | 9 | 9 | AY.64 | 0.005357 |
noncoding | 29737 | G29737T | G | T | 8 | 8 | AY.54 | 0.000763 |
noncoding | 29737 | G29737T | G | T | 8 | 8 | AY.61 | 0.000838 |
noncoding | 29737 | G29737T | G | T | 8 | 8 | B.1.596 | 0.000697 |
noncoding | 29737 | G29737T | G | T | 8 | 8 | B.1.619.1 | 0.005131 |
noncoding | 29737 | G29737T | G | T | 7 | 7 | AY.98 | 0.000553 |
noncoding | 29737 | G29737T | G | T | 7 | 7 | B.1.324 | 0.011236 |
noncoding | 29737 | G29737T | G | T | 6 | 6 | AY.114 | 0.001387 |
noncoding | 29737 | G29737T | G | T | 6 | 6 | AY.29.1 | 0.001323 |
noncoding | 29737 | G29737T | G | T | 6 | 6 | AY.75.1 | 0.001082 |
noncoding | 29737 | G29737T | G | T | 6 | 6 | B.1.160.22 | 0.040541 |
noncoding | 29737 | G29737T | G | T | 6 | 6 | B.1.258 | 0.000399 |
noncoding | 29737 | G29737T | G | T | 6 | 6 | B.1.36.22 | 0.007246 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | AY.121 | 0.000677 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | AY.89 | 0.02451 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | B | 0.000639 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | B.1.1.214 | 0.000277 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | B.1.240 | 0.001078 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | B.1.36 | 0.00073 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | B.1.577 | 0.003436 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | C.36 | 0.004554 |
noncoding | 29737 | G29737T | G | T | 5 | 5 | D.2 | 0.000375 |
noncoding | 29737 | G29737T | G | T | 4 | 4 | AY.48 | 0.00186 |
noncoding | 29737 | G29737T | G | T | 4 | 4 | B.1.1.39 | 0.002039 |
noncoding | 29737 | G29737T | G | T | 4 | 4 | B.4 | 0.00883 |
noncoding | 29737 | G29737T | G | T | 4 | 4 | C.37 | 0.000464 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.10 | 0.00159 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.101 | 0.001471 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.107 | 0.001398 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.118 | 0.000188 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.14 | 0.000264 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.32 | 0.001597 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.4.5 | 0.000322 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.40 | 0.002893 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.45 | 0.000365 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.5.4 | 0.00083 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.52 | 0.002443 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.88 | 0.002653 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.9 | 0.000203 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | AY.9.1 | 0.000251 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | B.1.1.316 | 0.002775 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | B.1.179 | 0.011278 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | B.1.36.29 | 0.001552 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | B.1.525 | 0.000339 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | B.1.621 | 0.000266 |
noncoding | 29737 | G29737T | G | T | 3 | 3 | P.1.7 | 0.000958 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | A | 0.000774 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | A.2.5 | 0.000998 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.109 | 0.001479 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.110 | 0.000225 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.116.1 | 0.000623 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.120.2.1 | 0.000997 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.23 | 0.000139 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.34.1 | 0.00102 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.46.2 | 0.001271 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.46.4 | 0.000329 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.58 | 0.001815 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.75 | 0.000112 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.80 | 0.002257 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.84 | 0.000875 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.85 | 0.000854 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.87 | 0.001665 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.91 | 0.001461 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.1.291 | 0.001485 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.1.459 | 0.030769 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.177.4 | 0.000422 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.177.44 | 0.001038 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.206 | 0.001631 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.234 | 0.000264 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.617.1 | 0.000258 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.637 | 0.000146 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | B.1.93 | 0.001867 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | P.1.10 | 0.000539 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | P.2 | 0.000373 |
noncoding | 29737 | G29737T | G | T | 2 | 2 | P.7 | 0.008734 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.104 | 0.001984 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.11 | 0.001339 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.2 | 0.000356 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.24 | 0.000431 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.46.5 | 0.000198 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.56 | 0.001605 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.60 | 0.000938 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.69 | 0.000187 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.73 | 0.000665 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.77 | 0.001127 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.82 | 0.001357 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | AY.99 | 0.001049 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.180 | 0.010753 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.273 | 0.006757 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.286 | 0.002899 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.311 | 0.000358 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.396 | 0.045455 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.399 | 0.090909 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.416 | 0.000905 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.434 | 0.000349 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.1.63 | 0.000386 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.110 | 0.004525 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.139 | 0.000733 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.177.53 | 0.002392 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.177.55 | 0.002331 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.177.62 | 0.001192 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.177.73 | 0.000566 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.177.82 | 0.000477 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.214 | 0.003663 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.223 | 0.002778 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.236 | 0.002053 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.279 | 0.000514 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.336 | 0.002439 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.351.5 | 0.0006 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.356 | 0.001727 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.389 | 0.001002 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.428 | 0.00102 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.469 | 0.00361 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.501 | 0.007353 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.516 | 0.001957 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.564.1 | 0.001577 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.568 | 0.001111 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.575.1 | 0.002439 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.621.1 | 0.000506 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.1.634 | 0.003425 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | B.6.6 | 0.000889 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | C.17 | 0.055556 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | P.1.17.1 | 0.000875 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | Q.1 | 0.000126 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | Q.4 | 0.000455 |
noncoding | 29737 | G29737T | G | T | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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