CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29735

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29735	A29735-		noncoding	A	-	16922	16922	1	29735-29735
noncoding	29735	A29735G		noncoding	A	G	1880	1880	1	29735-29735
noncoding	29735	A29735C		noncoding	A	C	707	707	1	29735-29735
noncoding	29735	A29735T		noncoding	A	T	427	427	1	29735-29735
noncoding	29735	A29735K		noncoding	A	K	1	1	1	29735-29735

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29735	A29735-	A	-	16922	16922	All	0.003237
noncoding	29735	A29735-	A	-	3716	3716	B.1.525	0.420505
noncoding	29735	A29735-	A	-	2143	2143	B.1.1.7	0.001918
noncoding	29735	A29735-	A	-	1982	1982	AY.4	0.003085
noncoding	29735	A29735G	A	G	1880	1880	All	0.00036
noncoding	29735	A29735-	A	-	1762	1762	B.1.1.311	0.631089
noncoding	29735	A29735-	A	-	833	833	AY.38	0.415876
noncoding	29735	A29735C	A	C	707	707	All	0.000135
noncoding	29735	A29735G	A	G	644	644	AY.4	0.001002
noncoding	29735	A29735C	A	C	524	524	AY.3	0.005212
noncoding	29735	A29735-	A	-	512	512	B.1.617.2	0.001928
noncoding	29735	A29735T	A	T	427	427	All	0.000082
noncoding	29735	A29735G	A	G	368	368	B.1.1.7	0.000329
noncoding	29735	A29735-	A	-	364	364	B.1.351.2	0.110136
noncoding	29735	A29735-	A	-	300	300	AY.39	0.007413
noncoding	29735	A29735G	A	G	289	289	B.1.1	0.005243
noncoding	29735	A29735-	A	-	288	288	AY.5	0.005947
noncoding	29735	A29735-	A	-	268	268	B.1.258.11	0.106223
noncoding	29735	A29735-	A	-	256	256	B.1	0.002345
noncoding	29735	A29735T	A	T	198	198	B.1.541	0.876106
noncoding	29735	A29735-	A	-	195	195	B.1.526	0.004583
noncoding	29735	A29735-	A	-	183	183	AY.103	0.001136
noncoding	29735	A29735-	A	-	179	179	B.1.177	0.002357
noncoding	29735	A29735-	A	-	153	153	AY.25	0.00092
noncoding	29735	A29735-	A	-	150	150	AY.43	0.000665
noncoding	29735	A29735-	A	-	145	145	AY.46.6	0.01047
noncoding	29735	A29735-	A	-	141	141	B.1.2	0.001242
noncoding	29735	A29735-	A	-	130	130	B.1.1	0.002358
noncoding	29735	A29735-	A	-	112	112	AY.120	0.004164
noncoding	29735	A29735-	A	-	111	111	B.1.429	0.002612
noncoding	29735	A29735-	A	-	111	111	P.1	0.001749
noncoding	29735	A29735-	A	-	109	109	AY.44	0.000663
noncoding	29735	A29735G	A	G	106	106	AY.25	0.000638
noncoding	29735	A29735-	A	-	102	102	AY.42	0.004103
noncoding	29735	A29735-	A	-	102	102	B.1.221	0.007245
noncoding	29735	A29735-	A	-	97	97	AY.47	0.003017
noncoding	29735	A29735-	A	-	96	96	AY.73	0.063872
noncoding	29735	A29735-	A	-	96	96	B.1.160	0.002994
noncoding	29735	A29735-	A	-	90	90	B.1.258	0.005989
noncoding	29735	A29735-	A	-	85	85	B.1.177.81	0.016092
noncoding	29735	A29735-	A	-	84	84	AY.3	0.000835
noncoding	29735	A29735-	A	-	69	69	B.1.1.519	0.00274
noncoding	29735	A29735G	A	G	57	57	B.1.2	0.000502
noncoding	29735	A29735C	A	C	52	52	AY.4	0.000081
noncoding	29735	A29735-	A	-	51	51	B.1.243	0.003549
noncoding	29735	A29735-	A	-	47	47	B.1.351	0.001397
noncoding	29735	A29735-	A	-	46	46	AY.20	0.001788
noncoding	29735	A29735-	A	-	46	46	C.16	0.04878
noncoding	29735	A29735G	A	G	45	45	AY.103	0.000279
noncoding	29735	A29735-	A	-	44	44	B.1.177.24	0.056995
noncoding	29735	A29735-	A	-	42	42	P.1.16	0.015713
noncoding	29735	A29735-	A	-	39	39	AY.102	0.001034
noncoding	29735	A29735T	A	T	37	37	B.1.617.2	0.000139
noncoding	29735	A29735-	A	-	36	36	B.1.258.17	0.003743
noncoding	29735	A29735-	A	-	35	35	AY.29	0.000552
noncoding	29735	A29735T	A	T	35	35	AY.4	0.000054
noncoding	29735	A29735G	A	G	35	35	B.1	0.000321
noncoding	29735	A29735G	A	G	35	35	B.1.617.2	0.000132
noncoding	29735	A29735G	A	G	32	32	AY.26	0.000906
noncoding	29735	A29735-	A	-	31	31	AY.119	0.001095
noncoding	29735	A29735-	A	-	31	31	R.1	0.00279
noncoding	29735	A29735-	A	-	30	30	AY.26	0.000849
noncoding	29735	A29735-	A	-	29	29	AY.100	0.001334
noncoding	29735	A29735-	A	-	28	28	AY.4.2	0.000607
noncoding	29735	A29735-	A	-	27	27	B.1.346	0.035387
noncoding	29735	A29735-	A	-	26	26	AY.6	0.001069
noncoding	29735	A29735-	A	-	26	26	B.1.427	0.001313
noncoding	29735	A29735T	A	T	24	24	AY.46.6	0.001733
noncoding	29735	A29735G	A	G	23	23	AY.9.2	0.000845
noncoding	29735	A29735-	A	-	23	23	B.1.1.37	0.004436
noncoding	29735	A29735-	A	-	22	22	B.1.1.368	0.067901
noncoding	29735	A29735G	A	G	21	21	AY.43	0.000093
noncoding	29735	A29735-	A	-	21	21	B.1.305	0.045161
noncoding	29735	A29735-	A	-	21	21	B.1.596	0.00183
noncoding	29735	A29735-	A	-	20	20	B.1.1.222	0.00408
noncoding	29735	A29735-	A	-	20	20	B.1.289	0.053191
noncoding	29735	A29735-	A	-	20	20	B.1.575	0.006068
noncoding	29735	A29735-	A	-	19	19	AY.45	0.002312
noncoding	29735	A29735-	A	-	19	19	AY.92	0.005458
noncoding	29735	A29735C	A	C	19	19	B.1.525	0.00215
noncoding	29735	A29735-	A	-	19	19	B.1.621	0.001682
noncoding	29735	A29735-	A	-	19	19	C.37	0.002205
noncoding	29735	A29735-	A	-	18	18	AY.118	0.001128
noncoding	29735	A29735-	A	-	18	18	B.1.1.172	0.327273
noncoding	29735	A29735-	A	-	18	18	B.1.1.307	0.04557
noncoding	29735	A29735-	A	-	18	18	B.1.404	0.023438
noncoding	29735	A29735-	A	-	18	18	P.1.14	0.00086
noncoding	29735	A29735-	A	-	17	17	B.1.1.265	0.053628
noncoding	29735	A29735G	A	G	15	15	AY.3	0.000149
noncoding	29735	A29735G	A	G	14	14	B.1.1.220	0.026022
noncoding	29735	A29735C	A	C	14	14	B.1.1.7	0.000013
noncoding	29735	A29735-	A	-	14	14	B.1.36.1	0.015964
noncoding	29735	A29735-	A	-	14	14	B.1.36.29	0.007243
noncoding	29735	A29735-	A	-	13	13	AY.61	0.001362
noncoding	29735	A29735-	A	-	13	13	AY.74	0.001503
noncoding	29735	A29735-	A	-	13	13	AY.9.1	0.001088
noncoding	29735	A29735-	A	-	13	13	B.1.36	0.001897
noncoding	29735	A29735C	A	C	12	12	AY.26	0.00034
noncoding	29735	A29735G	A	G	12	12	AY.44	0.000073
noncoding	29735	A29735-	A	-	12	12	AY.9.2	0.000441
noncoding	29735	A29735-	A	-	12	12	B.1.1.416	0.01086
noncoding	29735	A29735-	A	-	11	11	AY.117	0.00093
noncoding	29735	A29735T	A	T	11	11	AY.43	0.000049
noncoding	29735	A29735-	A	-	11	11	AY.75	0.000616
noncoding	29735	A29735-	A	-	11	11	AY.9	0.000744
noncoding	29735	A29735-	A	-	11	11	B	0.001406
noncoding	29735	A29735-	A	-	11	11	B.1.1.214	0.00061
noncoding	29735	A29735-	A	-	11	11	B.1.177.62	0.013111
noncoding	29735	A29735-	A	-	11	11	B.1.177.75	0.011446
noncoding	29735	A29735-	A	-	11	11	P.2	0.002053
noncoding	29735	A29735-	A	-	10	10	AY.114	0.002311
noncoding	29735	A29735-	A	-	10	10	AY.23	0.000697
noncoding	29735	A29735-	A	-	10	10	AY.46.4	0.001645
noncoding	29735	A29735-	A	-	10	10	B.1.1.25	0.005685
noncoding	29735	A29735-	A	-	10	10	B.1.1.279	0.011211
noncoding	29735	A29735-	A	-	10	10	B.1.1.33	0.004209
noncoding	29735	A29735T	A	T	10	10	B.1.429	0.000235
noncoding	29735	A29735-	A	-	10	10	B.1.595	0.00261
noncoding	29735	A29735-	A	-	10	10	B.1.623	0.005365
noncoding	29735	A29735G	A	G	9	9	AY.14	0.000792
noncoding	29735	A29735-	A	-	9	9	AY.2	0.003205
noncoding	29735	A29735-	A	-	9	9	AY.34.1	0.004589
noncoding	29735	A29735-	A	-	9	9	AY.46	0.000937
noncoding	29735	A29735G	A	G	9	9	AY.54	0.000858
noncoding	29735	A29735-	A	-	9	9	AY.75.1	0.001623
noncoding	29735	A29735-	A	-	9	9	B.1.160.14	0.019068
noncoding	29735	A29735-	A	-	9	9	B.1.258.3	0.015075
noncoding	29735	A29735-	A	-	9	9	B.1.398	0.026786
noncoding	29735	A29735-	A	-	9	9	B.1.416	0.011421
noncoding	29735	A29735-	A	-	9	9	B.1.422	0.007311
noncoding	29735	A29735-	A	-	8	8	AY.34	0.000776
noncoding	29735	A29735-	A	-	8	8	AY.46.5	0.001587
noncoding	29735	A29735-	A	-	8	8	AY.98.1	0.000387
noncoding	29735	A29735-	A	-	8	8	AY.99.2	0.000737
noncoding	29735	A29735-	A	-	8	8	B.1.1.153	0.008762
noncoding	29735	A29735-	A	-	8	8	B.1.1.28	0.00249
noncoding	29735	A29735-	A	-	8	8	B.1.234	0.001056
noncoding	29735	A29735-	A	-	8	8	B.1.311	0.002197
noncoding	29735	A29735-	A	-	8	8	B.1.36.22	0.009662
noncoding	29735	A29735C	A	C	8	8	B.1.617.2	0.00003
noncoding	29735	A29735-	A	-	8	8	C.36.3	0.004538
noncoding	29735	A29735-	A	-	7	7	A.1	0.001973
noncoding	29735	A29735T	A	T	7	7	AY.102	0.000186
noncoding	29735	A29735-	A	-	7	7	AY.13	0.001127
noncoding	29735	A29735-	A	-	7	7	AY.33	0.000467
noncoding	29735	A29735C	A	C	7	7	AY.44	0.000043
noncoding	29735	A29735-	A	-	7	7	AY.54	0.000667
noncoding	29735	A29735T	A	T	7	7	AY.6	0.000288
noncoding	29735	A29735-	A	-	7	7	AY.85	0.00299
noncoding	29735	A29735-	A	-	7	7	B.1.1.306	0.003069
noncoding	29735	A29735-	A	-	7	7	B.1.1.39	0.003568
noncoding	29735	A29735T	A	T	7	7	B.1.1.7	0.000006
noncoding	29735	A29735-	A	-	7	7	B.1.110.3	0.005029
noncoding	29735	A29735-	A	-	7	7	B.1.160.33	0.030973
noncoding	29735	A29735-	A	-	7	7	B.1.240	0.001509
noncoding	29735	A29735C	A	C	7	7	B.1.36.1	0.007982
noncoding	29735	A29735-	A	-	7	7	B.1.400	0.003003
noncoding	29735	A29735-	A	-	7	7	B.1.499	0.007353
noncoding	29735	A29735-	A	-	7	7	B.1.637	0.000512
noncoding	29735	A29735-	A	-	6	6	A	0.002322
noncoding	29735	A29735-	A	-	6	6	AY.14	0.000528
noncoding	29735	A29735G	A	G	6	6	AY.29	0.000095
noncoding	29735	A29735-	A	-	6	6	AY.35	0.001398
noncoding	29735	A29735T	A	T	6	6	AY.44	0.000037
noncoding	29735	A29735-	A	-	6	6	AY.65	0.003198
noncoding	29735	A29735C	A	C	6	6	AY.9	0.000406
noncoding	29735	A29735T	A	T	6	6	B.1	0.000055
noncoding	29735	A29735G	A	G	6	6	B.1.1.231	0.018576
noncoding	29735	A29735-	A	-	6	6	B.1.1.316	0.00555
noncoding	29735	A29735G	A	G	6	6	B.1.160	0.000187
noncoding	29735	A29735G	A	G	6	6	B.1.177	0.000079
noncoding	29735	A29735G	A	G	6	6	B.1.179	0.022556
noncoding	29735	A29735-	A	-	6	6	B.1.389	0.006012
noncoding	29735	A29735-	A	-	6	6	B.1.595.1	0.035088
noncoding	29735	A29735-	A	-	6	6	B.40	0.002186
noncoding	29735	A29735-	A	-	6	6	D.2	0.00045
noncoding	29735	A29735-	A	-	6	6	N.4	0.025532
noncoding	29735	A29735G	A	G	6	6	P.1.9	0.028846
noncoding	29735	A29735-	A	-	6	6	Q.1	0.000758
noncoding	29735	A29735T	A	T	5	5	A	0.001935
noncoding	29735	A29735G	A	G	5	5	AY.113	0.000712
noncoding	29735	A29735-	A	-	5	5	AY.36	0.000741
noncoding	29735	A29735C	A	C	5	5	AY.43	0.000022
noncoding	29735	A29735C	A	C	5	5	AY.73	0.003327
noncoding	29735	A29735-	A	-	5	5	B.1.1.189	0.007564
noncoding	29735	A29735C	A	C	5	5	B.1.1.214	0.000277
noncoding	29735	A29735-	A	-	5	5	B.1.1.317	0.002058
noncoding	29735	A29735-	A	-	5	5	B.1.1.318	0.001509
noncoding	29735	A29735G	A	G	5	5	B.1.1.409	0.014164
noncoding	29735	A29735-	A	-	5	5	B.1.177.7	0.000824
noncoding	29735	A29735-	A	-	5	5	B.1.177.86	0.000917
noncoding	29735	A29735-	A	-	5	5	B.1.258.14	0.004902
noncoding	29735	A29735-	A	-	5	5	B.1.279	0.002568
noncoding	29735	A29735G	A	G	5	5	B.1.400	0.002145
noncoding	29735	A29735-	A	-	5	5	B.1.408	0.01845
noncoding	29735	A29735-	A	-	5	5	B.1.609	0.002397
noncoding	29735	A29735G	A	G	5	5	B.1.621	0.000443
noncoding	29735	A29735G	A	G	5	5	P.1.15	0.001162
noncoding	29735	A29735-	A	-	5	5	P.1.15	0.001162
noncoding	29735	A29735G	A	G	5	5	Q.8	0.000825
noncoding	29735	A29735-	A	-	4	4	AY.109	0.002959
noncoding	29735	A29735T	A	T	4	4	AY.3	0.00004
noncoding	29735	A29735-	A	-	4	4	AY.30	0.001583
noncoding	29735	A29735T	A	T	4	4	AY.39	0.000099
noncoding	29735	A29735G	A	G	4	4	AY.45	0.000487
noncoding	29735	A29735T	A	T	4	4	AY.5	0.000083
noncoding	29735	A29735-	A	-	4	4	AY.59	0.002119
noncoding	29735	A29735T	A	T	4	4	B.1.1.368	0.012346
noncoding	29735	A29735-	A	-	4	4	B.1.1.464	0.005891
noncoding	29735	A29735-	A	-	4	4	B.1.210	0.008529
noncoding	29735	A29735-	A	-	4	4	B.1.497	0.001259
noncoding	29735	A29735-	A	-	4	4	B.1.517	0.001708
noncoding	29735	A29735-	A	-	4	4	B.1.582	0.001963
noncoding	29735	A29735-	A	-	4	4	B.1.588	0.00364
noncoding	29735	A29735-	A	-	4	4	N.5	0.007067
noncoding	29735	A29735C	A	C	3	3	AY.102	0.00008
noncoding	29735	A29735C	A	C	3	3	AY.103	0.000019
noncoding	29735	A29735T	A	T	3	3	AY.103	0.000019
noncoding	29735	A29735-	A	-	3	3	AY.110	0.000338
noncoding	29735	A29735-	A	-	3	3	AY.12	0.000948
noncoding	29735	A29735G	A	G	3	3	AY.120	0.000112
noncoding	29735	A29735C	A	C	3	3	AY.20	0.000117
noncoding	29735	A29735G	A	G	3	3	AY.23	0.000209
noncoding	29735	A29735T	A	T	3	3	AY.25	0.000018
noncoding	29735	A29735-	A	-	3	3	AY.27	0.000194
noncoding	29735	A29735-	A	-	3	3	AY.3.1	0.000256
noncoding	29735	A29735-	A	-	3	3	AY.32	0.001597
noncoding	29735	A29735G	A	G	3	3	AY.39	0.000074
noncoding	29735	A29735-	A	-	3	3	AY.39.1	0.000119
noncoding	29735	A29735-	A	-	3	3	AY.40	0.002893
noncoding	29735	A29735G	A	G	3	3	AY.5	0.000062
noncoding	29735	A29735-	A	-	3	3	AY.5.3	0.001012
noncoding	29735	A29735-	A	-	3	3	AY.51	0.002727
noncoding	29735	A29735-	A	-	3	3	AY.62	0.001307
noncoding	29735	A29735-	A	-	3	3	AY.7	0.000588
noncoding	29735	A29735-	A	-	3	3	AY.84	0.001312
noncoding	29735	A29735C	A	C	3	3	AY.85	0.001282
noncoding	29735	A29735-	A	-	3	3	B.1.1.1	0.00098
noncoding	29735	A29735-	A	-	3	3	B.1.1.192	0.006928
noncoding	29735	A29735T	A	T	3	3	B.1.1.216	0.002671
noncoding	29735	A29735-	A	-	3	3	B.1.1.228	0.009146
noncoding	29735	A29735-	A	-	3	3	B.1.1.236	0.02069
noncoding	29735	A29735-	A	-	3	3	B.1.1.337	0.010791
noncoding	29735	A29735-	A	-	3	3	B.1.1.375	0.035714
noncoding	29735	A29735-	A	-	3	3	B.1.1.397	0.006757
noncoding	29735	A29735-	A	-	3	3	B.1.1.428	0.028302
noncoding	29735	A29735-	A	-	3	3	B.1.1.46	0.0131
noncoding	29735	A29735-	A	-	3	3	B.1.1.70	0.001023
noncoding	29735	A29735-	A	-	3	3	B.1.111	0.003525
noncoding	29735	A29735-	A	-	3	3	B.1.145	0.157895
noncoding	29735	A29735-	A	-	3	3	B.1.149	0.010274
noncoding	29735	A29735-	A	-	3	3	B.1.177.18	0.00348
noncoding	29735	A29735-	A	-	3	3	B.1.177.60	0.000655
noncoding	29735	A29735-	A	-	3	3	B.1.177.87	0.002183
noncoding	29735	A29735T	A	T	3	3	B.1.243	0.000209
noncoding	29735	A29735-	A	-	3	3	B.1.258.21	0.023256
noncoding	29735	A29735-	A	-	3	3	B.1.36.16	0.004274
noncoding	29735	A29735-	A	-	3	3	B.1.36.17	0.001482
noncoding	29735	A29735-	A	-	3	3	B.1.36.18	0.001261
noncoding	29735	A29735-	A	-	3	3	B.1.36.31	0.005254
noncoding	29735	A29735-	A	-	3	3	B.1.396	0.002117
noncoding	29735	A29735-	A	-	3	3	B.1.399	0.005803
noncoding	29735	A29735-	A	-	3	3	B.1.416.1	0.004687
noncoding	29735	A29735-	A	-	3	3	B.1.44	0.025
noncoding	29735	A29735-	A	-	3	3	B.1.466.2	0.001174
noncoding	29735	A29735-	A	-	3	3	B.39	0.006993
noncoding	29735	A29735T	A	T	3	3	D.2	0.000225
noncoding	29735	A29735C	A	C	3	3	P.1	0.000047
noncoding	29735	A29735G	A	G	3	3	P.1	0.000047
noncoding	29735	A29735-	A	-	3	3	P.1.17	0.000485
noncoding	29735	A29735-	A	-	3	3	Q.8	0.000495
noncoding	29735	A29735-	A	-	2	2	A.23.1	0.001408
noncoding	29735	A29735-	A	-	2	2	AD.2	0.000438
noncoding	29735	A29735-	A	-	2	2	AY.10	0.00106
noncoding	29735	A29735G	A	G	2	2	AY.102	0.000053
noncoding	29735	A29735-	A	-	2	2	AY.106	0.00067
noncoding	29735	A29735-	A	-	2	2	AY.111	0.000366
noncoding	29735	A29735G	A	G	2	2	AY.111	0.000366
noncoding	29735	A29735T	A	T	2	2	AY.113	0.000285
noncoding	29735	A29735C	A	C	2	2	AY.119	0.000071
noncoding	29735	A29735-	A	-	2	2	AY.19	0.002281
noncoding	29735	A29735T	A	T	2	2	AY.23	0.000139
noncoding	29735	A29735G	A	G	2	2	AY.27	0.000129
noncoding	29735	A29735C	A	C	2	2	AY.29	0.000032
noncoding	29735	A29735T	A	T	2	2	AY.29	0.000032
noncoding	29735	A29735T	A	T	2	2	AY.33	0.000134
noncoding	29735	A29735G	A	G	2	2	AY.4.2	0.000043
noncoding	29735	A29735G	A	G	2	2	AY.4.3	0.001684
noncoding	29735	A29735G	A	G	2	2	AY.46	0.000208
noncoding	29735	A29735-	A	-	2	2	AY.46.3	0.001867
noncoding	29735	A29735G	A	G	2	2	AY.46.4	0.000329
noncoding	29735	A29735G	A	G	2	2	AY.47	0.000062
noncoding	29735	A29735-	A	-	2	2	AY.5.4	0.000553
noncoding	29735	A29735-	A	-	2	2	AY.56	0.00321
noncoding	29735	A29735-	A	-	2	2	AY.71	0.00095
noncoding	29735	A29735-	A	-	2	2	AY.94	0.000885
noncoding	29735	A29735-	A	-	2	2	AY.95	0.001522
noncoding	29735	A29735T	A	T	2	2	B.1.1	0.000036
noncoding	29735	A29735-	A	-	2	2	B.1.1.170	0.002494
noncoding	29735	A29735-	A	-	2	2	B.1.1.194	0.009901
noncoding	29735	A29735G	A	G	2	2	B.1.1.25	0.001137
noncoding	29735	A29735G	A	G	2	2	B.1.1.263	0.003115
noncoding	29735	A29735-	A	-	2	2	B.1.1.284	0.000215
noncoding	29735	A29735-	A	-	2	2	B.1.1.305	0.007722
noncoding	29735	A29735-	A	-	2	2	B.1.1.348	0.001592
noncoding	29735	A29735-	A	-	2	2	B.1.1.354	0.008772
noncoding	29735	A29735-	A	-	2	2	B.1.1.369	0.000892
noncoding	29735	A29735-	A	-	2	2	B.1.1.434	0.000697
noncoding	29735	A29735-	A	-	2	2	B.1.1.50	0.001358
noncoding	29735	A29735-	A	-	2	2	B.1.1.528	0.009615
noncoding	29735	A29735-	A	-	2	2	B.1.1.63	0.000772
noncoding	29735	A29735-	A	-	2	2	B.1.126	0.002551
noncoding	29735	A29735-	A	-	2	2	B.1.160.32	0.008584
noncoding	29735	A29735-	A	-	2	2	B.1.177.32	0.002699
noncoding	29735	A29735-	A	-	2	2	B.1.177.50	0.00939
noncoding	29735	A29735-	A	-	2	2	B.1.177.78	0.019417
noncoding	29735	A29735-	A	-	2	2	B.1.206	0.001631
noncoding	29735	A29735-	A	-	2	2	B.1.23	0.012121
noncoding	29735	A29735T	A	T	2	2	B.1.234	0.000264
noncoding	29735	A29735G	A	G	2	2	B.1.240	0.000431
noncoding	29735	A29735T	A	T	2	2	B.1.258	0.000133
noncoding	29735	A29735-	A	-	2	2	B.1.258.10	0.022727
noncoding	29735	A29735-	A	-	2	2	B.1.298	0.004228
noncoding	29735	A29735T	A	T	2	2	B.1.351	0.000059
noncoding	29735	A29735G	A	G	2	2	B.1.351	0.000059
noncoding	29735	A29735-	A	-	2	2	B.1.351.3	0.001753
noncoding	29735	A29735C	A	C	2	2	B.1.36.38	0.003284
noncoding	29735	A29735-	A	-	2	2	B.1.36.8	0.002
noncoding	29735	A29735-	A	-	2	2	B.1.369	0.00057
noncoding	29735	A29735-	A	-	2	2	B.1.391	0.002255
noncoding	29735	A29735-	A	-	2	2	B.1.436	0.002058
noncoding	29735	A29735-	A	-	2	2	B.1.441	0.019231
noncoding	29735	A29735T	A	T	2	2	B.1.474	0.003802
noncoding	29735	A29735-	A	-	2	2	B.1.509	0.001732
noncoding	29735	A29735-	A	-	2	2	B.1.543	0.02
noncoding	29735	A29735-	A	-	2	2	B.1.568	0.002222
noncoding	29735	A29735-	A	-	2	2	B.1.576	0.001813
noncoding	29735	A29735C	A	C	2	2	B.1.596	0.000174
noncoding	29735	A29735-	A	-	2	2	B.1.617.1	0.000258
noncoding	29735	A29735T	A	T	2	2	B.1.617.1	0.000258
noncoding	29735	A29735-	A	-	2	2	B.1.627	0.00404
noncoding	29735	A29735-	A	-	2	2	B.1.628	0.000705
noncoding	29735	A29735G	A	G	2	2	B.1.637	0.000146
noncoding	29735	A29735-	A	-	2	2	B.4	0.004415
noncoding	29735	A29735-	A	-	2	2	C.36	0.001821
noncoding	29735	A29735-	A	-	2	2	C.38	0.016129
noncoding	29735	A29735-	A	-	2	2	P.1.10	0.000539
noncoding	29735	A29735-	A	-	2	2	P.1.13	0.001797
noncoding	29735	A29735G	A	G	2	2	P.1.17	0.000324
noncoding	29735	A29735-	A	-	2	2	Q.4	0.00091
noncoding	29735	A29735C	A	C	1	1	A.1	0.000282
noncoding	29735	A29735-	A	-	1	1	A.2.3	0.004739
noncoding	29735	A29735-	A	-	1	1	A.2.5	0.000499
noncoding	29735	A29735T	A	T	1	1	A.2.5	0.000499
noncoding	29735	A29735-	A	-	1	1	A.30	0.142857
noncoding	29735	A29735-	A	-	1	1	AK.2	0.045455
noncoding	29735	A29735K	A	K	1	1	All	0
noncoding	29735	A29735C	A	C	1	1	AM.4	0.003571
noncoding	29735	A29735-	A	-	1	1	AU.1	0.001266
noncoding	29735	A29735G	A	G	1	1	AY.100	0.000046
noncoding	29735	A29735-	A	-	1	1	AY.105	0.000643
noncoding	29735	A29735T	A	T	1	1	AY.106	0.000335
noncoding	29735	A29735-	A	-	1	1	AY.108	0.001103
noncoding	29735	A29735C	A	C	1	1	AY.117	0.000085
noncoding	29735	A29735T	A	T	1	1	AY.118	0.000063
noncoding	29735	A29735G	A	G	1	1	AY.119	0.000035
noncoding	29735	A29735-	A	-	1	1	AY.120.1	0.000321
noncoding	29735	A29735-	A	-	1	1	AY.120.2.1	0.000498
noncoding	29735	A29735G	A	G	1	1	AY.121	0.000135
noncoding	29735	A29735-	A	-	1	1	AY.16	0.00038
noncoding	29735	A29735T	A	T	1	1	AY.19	0.00114
noncoding	29735	A29735T	A	T	1	1	AY.20	0.000039
noncoding	29735	A29735C	A	C	1	1	AY.23	0.00007
noncoding	29735	A29735T	A	T	1	1	AY.23.1	0.000417
noncoding	29735	A29735-	A	-	1	1	AY.24	0.000431
noncoding	29735	A29735T	A	T	1	1	AY.24	0.000431
noncoding	29735	A29735C	A	C	1	1	AY.25	0.000006
noncoding	29735	A29735T	A	T	1	1	AY.27	0.000065
noncoding	29735	A29735G	A	G	1	1	AY.29.1	0.000221
noncoding	29735	A29735-	A	-	1	1	AY.29.1	0.000221
noncoding	29735	A29735G	A	G	1	1	AY.30	0.000396
noncoding	29735	A29735T	A	T	1	1	AY.30	0.000396
noncoding	29735	A29735G	A	G	1	1	AY.32	0.000532
noncoding	29735	A29735G	A	G	1	1	AY.37	0.000316
noncoding	29735	A29735C	A	C	1	1	AY.37	0.000316
noncoding	29735	A29735G	A	G	1	1	AY.39.1	0.00004
noncoding	29735	A29735G	A	G	1	1	AY.4.2.1	0.000149
noncoding	29735	A29735C	A	C	1	1	AY.46	0.000104
noncoding	29735	A29735-	A	-	1	1	AY.48	0.000465
noncoding	29735	A29735C	A	C	1	1	AY.5	0.000021
noncoding	29735	A29735-	A	-	1	1	AY.52	0.000814
noncoding	29735	A29735G	A	G	1	1	AY.53	0.000288
noncoding	29735	A29735-	A	-	1	1	AY.55	0.000917
noncoding	29735	A29735C	A	C	1	1	AY.6	0.000041
noncoding	29735	A29735G	A	G	1	1	AY.60	0.000938
noncoding	29735	A29735G	A	G	1	1	AY.65	0.000533
noncoding	29735	A29735-	A	-	1	1	AY.66	0.00107
noncoding	29735	A29735G	A	G	1	1	AY.69	0.000187
noncoding	29735	A29735T	A	T	1	1	AY.7	0.000196
noncoding	29735	A29735T	A	T	1	1	AY.72	0.001361
noncoding	29735	A29735C	A	C	1	1	AY.74	0.000116
noncoding	29735	A29735G	A	G	1	1	AY.76	0.004831
noncoding	29735	A29735-	A	-	1	1	AY.81	0.001992
noncoding	29735	A29735-	A	-	1	1	AY.87	0.000833
noncoding	29735	A29735-	A	-	1	1	AY.88	0.000884
noncoding	29735	A29735G	A	G	1	1	AY.9	0.000068
noncoding	29735	A29735G	A	G	1	1	AY.9.1	0.000084
noncoding	29735	A29735C	A	C	1	1	AY.9.2	0.000037
noncoding	29735	A29735-	A	-	1	1	AY.91	0.00073
noncoding	29735	A29735T	A	T	1	1	AY.95	0.000761
noncoding	29735	A29735G	A	G	1	1	AY.98	0.000079
noncoding	29735	A29735-	A	-	1	1	AY.98	0.000079
noncoding	29735	A29735-	A	-	1	1	AZ.1	0.000867
noncoding	29735	A29735G	A	G	1	1	B	0.000128
noncoding	29735	A29735C	A	C	1	1	B.1.1	0.000018
noncoding	29735	A29735T	A	T	1	1	B.1.1.1	0.000327
noncoding	29735	A29735-	A	-	1	1	B.1.1.10	0.001115
noncoding	29735	A29735G	A	G	1	1	B.1.1.118	0.010204
noncoding	29735	A29735G	A	G	1	1	B.1.1.134	0.011364
noncoding	29735	A29735G	A	G	1	1	B.1.1.163	0.007634
noncoding	29735	A29735G	A	G	1	1	B.1.1.171	0.003676
noncoding	29735	A29735-	A	-	1	1	B.1.1.174	0.003378
noncoding	29735	A29735G	A	G	1	1	B.1.1.174	0.003378
noncoding	29735	A29735G	A	G	1	1	B.1.1.176	0.000439
noncoding	29735	A29735G	A	G	1	1	B.1.1.192	0.002309
noncoding	29735	A29735-	A	-	1	1	B.1.1.196	0.005714
noncoding	29735	A29735-	A	-	1	1	B.1.1.197	0.037037
noncoding	29735	A29735-	A	-	1	1	B.1.1.198	0.001468
noncoding	29735	A29735-	A	-	1	1	B.1.1.216	0.00089
noncoding	29735	A29735G	A	G	1	1	B.1.1.216	0.00089
noncoding	29735	A29735-	A	-	1	1	B.1.1.218	0.007692
noncoding	29735	A29735T	A	T	1	1	B.1.1.222	0.000204
noncoding	29735	A29735-	A	-	1	1	B.1.1.229	0.005747
noncoding	29735	A29735-	A	-	1	1	B.1.1.275	0.011236
noncoding	29735	A29735G	A	G	1	1	B.1.1.277	0.000759
noncoding	29735	A29735-	A	-	1	1	B.1.1.277	0.000759
noncoding	29735	A29735G	A	G	1	1	B.1.1.28	0.000311
noncoding	29735	A29735T	A	T	1	1	B.1.1.284	0.000107
noncoding	29735	A29735-	A	-	1	1	B.1.1.286	0.002899
noncoding	29735	A29735-	A	-	1	1	B.1.1.289	0.002083
noncoding	29735	A29735-	A	-	1	1	B.1.1.294	0.001266
noncoding	29735	A29735-	A	-	1	1	B.1.1.297	0.002237
noncoding	29735	A29735-	A	-	1	1	B.1.1.298	0.000862
noncoding	29735	A29735G	A	G	1	1	B.1.1.306	0.000438
noncoding	29735	A29735G	A	G	1	1	B.1.1.344	0.010753
noncoding	29735	A29735-	A	-	1	1	B.1.1.372	0.000689
noncoding	29735	A29735G	A	G	1	1	B.1.1.372	0.000689
noncoding	29735	A29735G	A	G	1	1	B.1.1.385	0.004464
noncoding	29735	A29735G	A	G	1	1	B.1.1.389	0.006061
noncoding	29735	A29735-	A	-	1	1	B.1.1.389	0.006061
noncoding	29735	A29735-	A	-	1	1	B.1.1.420	0.001006
noncoding	29735	A29735-	A	-	1	1	B.1.1.432	0.001266
noncoding	29735	A29735-	A	-	1	1	B.1.1.47	0.005348
noncoding	29735	A29735G	A	G	1	1	B.1.1.50	0.000679
noncoding	29735	A29735-	A	-	1	1	B.1.1.517	0.006803
noncoding	29735	A29735C	A	C	1	1	B.1.1.519	0.00004
noncoding	29735	A29735-	A	-	1	1	B.1.1.526	0.003546
noncoding	29735	A29735G	A	G	1	1	B.1.1.63	0.000386
noncoding	29735	A29735C	A	C	1	1	B.1.1.67	0.004566
noncoding	29735	A29735G	A	G	1	1	B.1.1.70	0.000341
noncoding	29735	A29735-	A	-	1	1	B.1.1.71	0.006061
noncoding	29735	A29735G	A	G	1	1	B.1.104	0.00369
noncoding	29735	A29735G	A	G	1	1	B.1.126	0.001276
noncoding	29735	A29735-	A	-	1	1	B.1.139	0.000733
noncoding	29735	A29735T	A	T	1	1	B.1.160	0.000031
noncoding	29735	A29735C	A	C	1	1	B.1.160	0.000031
noncoding	29735	A29735-	A	-	1	1	B.1.162	0.005025
noncoding	29735	A29735-	A	-	1	1	B.1.167	0.007812
noncoding	29735	A29735-	A	-	1	1	B.1.177.21	0.000076
noncoding	29735	A29735-	A	-	1	1	B.1.177.30	0.002513
noncoding	29735	A29735-	A	-	1	1	B.1.177.44	0.000519
noncoding	29735	A29735-	A	-	1	1	B.1.177.51	0.004566
noncoding	29735	A29735-	A	-	1	1	B.1.177.53	0.002392
noncoding	29735	A29735-	A	-	1	1	B.1.177.57	0.000281
noncoding	29735	A29735-	A	-	1	1	B.1.177.6	0.000977
noncoding	29735	A29735T	A	T	1	1	B.1.177.63	0.002703
noncoding	29735	A29735-	A	-	1	1	B.1.177.65	0.000665
noncoding	29735	A29735-	A	-	1	1	B.1.177.73	0.000566
noncoding	29735	A29735-	A	-	1	1	B.1.177.77	0.000726
noncoding	29735	A29735-	A	-	1	1	B.1.180	0.05
noncoding	29735	A29735-	A	-	1	1	B.1.192	0.009259
noncoding	29735	A29735G	A	G	1	1	B.1.195	0.005025
noncoding	29735	A29735T	A	T	1	1	B.1.2	0.000009
noncoding	29735	A29735-	A	-	1	1	B.1.214.2	0.0006
noncoding	29735	A29735-	A	-	1	1	B.1.222	0.001692
noncoding	29735	A29735G	A	G	1	1	B.1.232	0.000537
noncoding	29735	A29735-	A	-	1	1	B.1.241	0.000812
noncoding	29735	A29735G	A	G	1	1	B.1.243	0.00007
noncoding	29735	A29735G	A	G	1	1	B.1.258	0.000067
noncoding	29735	A29735-	A	-	1	1	B.1.258.16	0.001637
noncoding	29735	A29735-	A	-	1	1	B.1.291	0.019231
noncoding	29735	A29735G	A	G	1	1	B.1.311	0.000275
noncoding	29735	A29735C	A	C	1	1	B.1.324	0.001605
noncoding	29735	A29735T	A	T	1	1	B.1.349	0.000715
noncoding	29735	A29735C	A	C	1	1	B.1.36	0.000146
noncoding	29735	A29735G	A	G	1	1	B.1.36.1	0.00114
noncoding	29735	A29735-	A	-	1	1	B.1.36.19	0.009259
noncoding	29735	A29735-	A	-	1	1	B.1.36.37	0.002778
noncoding	29735	A29735-	A	-	1	1	B.1.362	0.001541
noncoding	29735	A29735G	A	G	1	1	B.1.371	0.001122
noncoding	29735	A29735-	A	-	1	1	B.1.390	0.010638
noncoding	29735	A29735T	A	T	1	1	B.1.396	0.000706
noncoding	29735	A29735G	A	G	1	1	B.1.416	0.001269
noncoding	29735	A29735G	A	G	1	1	B.1.424	0.008065
noncoding	29735	A29735-	A	-	1	1	B.1.442	0.035714
noncoding	29735	A29735-	A	-	1	1	B.1.443	0.004673
noncoding	29735	A29735T	A	T	1	1	B.1.459	0.004082
noncoding	29735	A29735C	A	C	1	1	B.1.459	0.004082
noncoding	29735	A29735-	A	-	1	1	B.1.470	0.001404
noncoding	29735	A29735-	A	-	1	1	B.1.493	0.025641
noncoding	29735	A29735K	A	K	1	1	B.1.525	0.000113
noncoding	29735	A29735G	A	G	1	1	B.1.525	0.000113
noncoding	29735	A29735T	A	T	1	1	B.1.525	0.000113
noncoding	29735	A29735-	A	-	1	1	B.1.551	0.00129
noncoding	29735	A29735C	A	C	1	1	B.1.556	0.007519
noncoding	29735	A29735-	A	-	1	1	B.1.561	0.000397
noncoding	29735	A29735-	A	-	1	1	B.1.564.1	0.001577
noncoding	29735	A29735T	A	T	1	1	B.1.575	0.000303
noncoding	29735	A29735-	A	-	1	1	B.1.577	0.000687
noncoding	29735	A29735-	A	-	1	1	B.1.597	0.00463
noncoding	29735	A29735-	A	-	1	1	B.1.600	0.005848
noncoding	29735	A29735G	A	G	1	1	B.1.609	0.000479
noncoding	29735	A29735-	A	-	1	1	B.1.617.3	0.002985
noncoding	29735	A29735-	A	-	1	1	B.1.619	0.000871
noncoding	29735	A29735-	A	-	1	1	B.1.620	0.000946
noncoding	29735	A29735-	A	-	1	1	B.1.633	0.041667
noncoding	29735	A29735G	A	G	1	1	B.11	0.005128
noncoding	29735	A29735-	A	-	1	1	B.3	0.000831
noncoding	29735	A29735-	A	-	1	1	B.3.1	0.001658
noncoding	29735	A29735-	A	-	1	1	B.31	0.003731
noncoding	29735	A29735-	A	-	1	1	B.4.2	0.066667
noncoding	29735	A29735-	A	-	1	1	B.55	0.00295
noncoding	29735	A29735-	A	-	1	1	B.6	0.00091
noncoding	29735	A29735-	A	-	1	1	C.1.2	0.004255
noncoding	29735	A29735-	A	-	1	1	C.35	0.000774
noncoding	29735	A29735C	A	C	1	1	C.37	0.000116
noncoding	29735	A29735-	A	-	1	1	D.5	0.004975
noncoding	29735	A29735G	A	G	1	1	P.1.1	0.000318
noncoding	29735	A29735-	A	-	1	1	P.1.1	0.000318
noncoding	29735	A29735-	A	-	1	1	P.1.12	0.000484
noncoding	29735	A29735-	A	-	1	1	P.1.2	0.001156
noncoding	29735	A29735-	A	-	1	1	P.1.4	0.000977
noncoding	29735	A29735G	A	G	1	1	P.1.6	0.001946
noncoding	29735	A29735-	A	-	1	1	P.1.7	0.000319
noncoding	29735	A29735-	A	-	1	1	P.6	0.003145
noncoding	29735	A29735-	A	-	1	1	P.7	0.004367
noncoding	29735	A29735-	A	-	1	1	Q.2	0.000613
noncoding	29735	A29735-	A	-	1	1	Q.3	0.000145
noncoding	29735	A29735G	A	G	1	1	Q.4	0.000455
noncoding	29735	A29735-	A	-	1	1	Q.7	0.001111
noncoding	29735	A29735-	A	-	1	1	W.1	0.008696
noncoding	29735	A29735-	A	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.