CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29732 | C29732T | noncoding | C | T | 2208 | 2208 | 1 | 29732-29732 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29732 | C29732T | C | T | 2208 | 2208 | All | 0.000422 |
noncoding | 29732 | C29732T | C | T | 892 | 892 | B.1.1.7 | 0.000799 |
noncoding | 29732 | C29732T | C | T | 113 | 113 | B.1.427 | 0.005706 |
noncoding | 29732 | C29732T | C | T | 92 | 92 | B.1.526 | 0.002162 |
noncoding | 29732 | C29732T | C | T | 85 | 85 | B.1.617.2 | 0.00032 |
noncoding | 29732 | C29732T | C | T | 76 | 76 | B.1 | 0.000696 |
noncoding | 29732 | C29732T | C | T | 74 | 74 | AY.44 | 0.00045 |
noncoding | 29732 | C29732T | C | T | 73 | 73 | Q.1 | 0.009222 |
noncoding | 29732 | C29732T | C | T | 57 | 57 | AY.4 | 0.000089 |
noncoding | 29732 | C29732T | C | T | 53 | 53 | B.1.2 | 0.000467 |
noncoding | 29732 | C29732T | C | T | 40 | 40 | B.1.177 | 0.000527 |
noncoding | 29732 | C29732T | C | T | 36 | 36 | AY.25 | 0.000217 |
noncoding | 29732 | C29732T | C | T | 34 | 34 | AY.103 | 0.000211 |
noncoding | 29732 | C29732T | C | T | 29 | 29 | P.1 | 0.000457 |
noncoding | 29732 | C29732T | C | T | 28 | 28 | AY.43 | 0.000124 |
noncoding | 29732 | C29732T | C | T | 28 | 28 | B.1.1.25 | 0.015918 |
noncoding | 29732 | C29732T | C | T | 23 | 23 | B.1.243 | 0.0016 |
noncoding | 29732 | C29732T | C | T | 20 | 20 | B.1.1.420 | 0.020121 |
noncoding | 29732 | C29732T | C | T | 19 | 19 | B.1.351.2 | 0.005749 |
noncoding | 29732 | C29732T | C | T | 15 | 15 | AY.14 | 0.00132 |
noncoding | 29732 | C29732T | C | T | 15 | 15 | AY.3 | 0.000149 |
noncoding | 29732 | C29732T | C | T | 15 | 15 | B.1.1.317 | 0.006175 |
noncoding | 29732 | C29732T | C | T | 14 | 14 | AY.100 | 0.000644 |
noncoding | 29732 | C29732T | C | T | 14 | 14 | R.1 | 0.00126 |
noncoding | 29732 | C29732T | C | T | 13 | 13 | B.1.1.519 | 0.000516 |
noncoding | 29732 | C29732T | C | T | 13 | 13 | B.1.429 | 0.000306 |
noncoding | 29732 | C29732T | C | T | 11 | 11 | AY.61 | 0.001153 |
noncoding | 29732 | C29732T | C | T | 10 | 10 | B.1.1 | 0.000181 |
noncoding | 29732 | C29732T | C | T | 10 | 10 | P.1.14 | 0.000478 |
noncoding | 29732 | C29732T | C | T | 9 | 9 | AY.6 | 0.00037 |
noncoding | 29732 | C29732T | C | T | 8 | 8 | B.1.160 | 0.00025 |
noncoding | 29732 | C29732T | C | T | 8 | 8 | B.1.177.60 | 0.001747 |
noncoding | 29732 | C29732T | C | T | 8 | 8 | B.1.351 | 0.000238 |
noncoding | 29732 | C29732T | C | T | 8 | 8 | B.1.621 | 0.000708 |
noncoding | 29732 | C29732T | C | T | 7 | 7 | AY.26 | 0.000198 |
noncoding | 29732 | C29732T | C | T | 7 | 7 | AY.48 | 0.003256 |
noncoding | 29732 | C29732T | C | T | 7 | 7 | B.1.551 | 0.009032 |
noncoding | 29732 | C29732T | C | T | 6 | 6 | AY.29 | 0.000095 |
noncoding | 29732 | C29732T | C | T | 6 | 6 | B.1.258.11 | 0.002378 |
noncoding | 29732 | C29732T | C | T | 6 | 6 | B.1.637 | 0.000438 |
noncoding | 29732 | C29732T | C | T | 5 | 5 | AY.5 | 0.000103 |
noncoding | 29732 | C29732T | C | T | 5 | 5 | B.1.400 | 0.002145 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | AY.120 | 0.000149 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.1.214 | 0.000222 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.1.347 | 0.072727 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.1.50 | 0.002716 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.311 | 0.001098 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.36.29 | 0.002069 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.497 | 0.001259 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.564 | 0.001704 |
noncoding | 29732 | C29732T | C | T | 4 | 4 | B.1.575 | 0.001214 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | AY.102 | 0.00008 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | AY.119 | 0.000106 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | AY.39 | 0.000074 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | AY.9 | 0.000203 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | AY.9.2 | 0.00011 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | AY.98.1 | 0.000145 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | B.1.1.277 | 0.002276 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | B.1.1.305 | 0.011583 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | B.1.1.37 | 0.000579 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | B.1.258 | 0.0002 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | B.1.36 | 0.000438 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | C.37 | 0.000348 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | P.1.1 | 0.000953 |
noncoding | 29732 | C29732T | C | T | 3 | 3 | P.1.10 | 0.000808 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | A | 0.000774 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | AY.27 | 0.000129 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | AY.36 | 0.000296 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | AY.4.2.1 | 0.000298 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | AY.46.4 | 0.000329 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | AY.47 | 0.000062 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | AY.99.2 | 0.000184 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B | 0.000256 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.1.207 | 0.002364 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.1.280 | 0.006173 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.1.298 | 0.001724 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.1.322 | 0.017544 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.1.364 | 0.133333 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.1.39 | 0.001019 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.1.432 | 0.002532 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.147 | 0.001512 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.177.52 | 0.003515 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.177.62 | 0.002384 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.177.87 | 0.001456 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.206 | 0.001631 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.22 | 0.002635 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.236 | 0.004107 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.239 | 0.002442 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.319 | 0.006098 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.369 | 0.00057 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.404 | 0.002604 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.425 | 0.005988 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | B.6 | 0.00182 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | C.36 | 0.001821 |
noncoding | 29732 | C29732T | C | T | 2 | 2 | P.1.8 | 0.009569 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AE.8 | 0.000489 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.104 | 0.001984 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.118 | 0.000063 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.12 | 0.000316 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.60 | 0.000938 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.65 | 0.000533 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.69 | 0.000187 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | AY.92 | 0.000287 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.135 | 0.004695 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.186 | 0.003436 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.27 | 0.00565 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.291 | 0.000742 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.301 | 0.001179 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.326 | 0.001761 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.429 | 0.004608 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.177.58 | 0.001332 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.177.83 | 0.001481 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.237 | 0.004975 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.258.7 | 0.001912 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.36.19 | 0.009259 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.36.26 | 0.002857 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.36.27 | 0.000763 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.403 | 0.003268 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.436 | 0.001029 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.459 | 0.004082 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.468 | 0.005714 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.521 | 0.004975 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.549 | 0.007194 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.587 | 0.001898 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.600 | 0.005848 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.609 | 0.000479 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.1.628 | 0.000352 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.11 | 0.005128 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.3 | 0.000831 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | B.6.6 | 0.000889 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | P.1.7 | 0.000319 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | P.3 | 0.001595 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | P.5 | 0.013699 |
noncoding | 29732 | C29732T | C | T | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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