CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29732

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29732	C29732-		noncoding	C	-	13938	13938	1	29732-29732
noncoding	29732	C29732T		noncoding	C	T	2208	2208	1	29732-29732
noncoding	29732	C29732A		noncoding	C	A	225	225	1	29732-29732
noncoding	29732	C29732G		noncoding	C	G	127	127	1	29732-29732
noncoding	29732	C29732W		noncoding	C	W	2	2	1	29732-29732
noncoding	29732	C29732R		noncoding	C	R	1	1	1	29732-29732
noncoding	29732	C29732K		noncoding	C	K	1	1	1	29732-29732
noncoding	29732	C29732B		noncoding	C	B	1	1	1	29732-29732
noncoding	29732	C29732H		noncoding	C	H	1	1	1	29732-29732

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29732	C29732-	C	-	13938	13938	All	0.002666
noncoding	29732	C29732-	C	-	3723	3723	B.1.525	0.421297
noncoding	29732	C29732T	C	T	2208	2208	All	0.000422
noncoding	29732	C29732-	C	-	1982	1982	B.1.1.7	0.001774
noncoding	29732	C29732-	C	-	1759	1759	B.1.1.311	0.630014
noncoding	29732	C29732T	C	T	892	892	B.1.1.7	0.000799
noncoding	29732	C29732-	C	-	834	834	AY.38	0.416375
noncoding	29732	C29732-	C	-	564	564	AY.4	0.000878
noncoding	29732	C29732-	C	-	411	411	B.1.617.2	0.001548
noncoding	29732	C29732-	C	-	362	362	B.1.351.2	0.109531
noncoding	29732	C29732-	C	-	287	287	AY.5	0.005926
noncoding	29732	C29732-	C	-	284	284	AY.39	0.007018
noncoding	29732	C29732A	C	A	225	225	All	0.000043
noncoding	29732	C29732-	C	-	192	192	B.1.526	0.004513
noncoding	29732	C29732-	C	-	174	174	B.1	0.001594
noncoding	29732	C29732-	C	-	157	157	AY.103	0.000975
noncoding	29732	C29732-	C	-	149	149	B.1.177	0.001962
noncoding	29732	C29732G	C	G	127	127	All	0.000024
noncoding	29732	C29732-	C	-	119	119	B.1.1	0.002159
noncoding	29732	C29732-	C	-	114	114	B.1.2	0.001004
noncoding	29732	C29732T	C	T	113	113	B.1.427	0.005706
noncoding	29732	C29732-	C	-	109	109	AY.120	0.004052
noncoding	29732	C29732-	C	-	109	109	B.1.429	0.002565
noncoding	29732	C29732-	C	-	102	102	AY.25	0.000614
noncoding	29732	C29732-	C	-	101	101	P.1	0.001591
noncoding	29732	C29732-	C	-	96	96	AY.73	0.063872
noncoding	29732	C29732-	C	-	96	96	B.1.221	0.006819
noncoding	29732	C29732-	C	-	95	95	AY.43	0.000421
noncoding	29732	C29732-	C	-	93	93	AY.47	0.002893
noncoding	29732	C29732T	C	T	92	92	B.1.526	0.002162
noncoding	29732	C29732T	C	T	85	85	B.1.617.2	0.00032
noncoding	29732	C29732-	C	-	84	84	AY.42	0.003379
noncoding	29732	C29732-	C	-	84	84	B.1.177.81	0.015903
noncoding	29732	C29732T	C	T	76	76	B.1	0.000696
noncoding	29732	C29732T	C	T	74	74	AY.44	0.00045
noncoding	29732	C29732T	C	T	73	73	Q.1	0.009222
noncoding	29732	C29732-	C	-	71	71	AY.3	0.000706
noncoding	29732	C29732-	C	-	62	62	B.1.160	0.001934
noncoding	29732	C29732-	C	-	59	59	B.1.1.519	0.002343
noncoding	29732	C29732T	C	T	57	57	AY.4	0.000089
noncoding	29732	C29732T	C	T	53	53	B.1.2	0.000467
noncoding	29732	C29732-	C	-	51	51	AY.44	0.00031
noncoding	29732	C29732-	C	-	50	50	B.1.243	0.003479
noncoding	29732	C29732-	C	-	46	46	C.16	0.04878
noncoding	29732	C29732-	C	-	44	44	B.1.177.24	0.056995
noncoding	29732	C29732A	C	A	41	41	B.1.1.7	0.000037
noncoding	29732	C29732-	C	-	41	41	P.1.16	0.015339
noncoding	29732	C29732T	C	T	40	40	B.1.177	0.000527
noncoding	29732	C29732T	C	T	36	36	AY.25	0.000217
noncoding	29732	C29732-	C	-	35	35	B.1.351	0.00104
noncoding	29732	C29732T	C	T	34	34	AY.103	0.000211
noncoding	29732	C29732-	C	-	30	30	R.1	0.0027
noncoding	29732	C29732T	C	T	29	29	P.1	0.000457
noncoding	29732	C29732T	C	T	28	28	AY.43	0.000124
noncoding	29732	C29732T	C	T	28	28	B.1.1.25	0.015918
noncoding	29732	C29732-	C	-	28	28	B.1.258	0.001863
noncoding	29732	C29732-	C	-	27	27	AY.26	0.000764
noncoding	29732	C29732-	C	-	27	27	B.1.346	0.035387
noncoding	29732	C29732-	C	-	25	25	AY.29	0.000394
noncoding	29732	C29732-	C	-	25	25	B.1.427	0.001262
noncoding	29732	C29732G	C	G	24	24	B.1.1.317	0.009881
noncoding	29732	C29732G	C	G	24	24	B.1.525	0.002716
noncoding	29732	C29732-	C	-	23	23	AY.100	0.001058
noncoding	29732	C29732-	C	-	23	23	AY.4.2	0.000499
noncoding	29732	C29732T	C	T	23	23	B.1.243	0.0016
noncoding	29732	C29732-	C	-	22	22	B.1.1.368	0.067901
noncoding	29732	C29732-	C	-	21	21	B.1.305	0.045161
noncoding	29732	C29732-	C	-	20	20	AY.102	0.00053
noncoding	29732	C29732G	C	G	20	20	AY.4	0.000031
noncoding	29732	C29732T	C	T	20	20	B.1.1.420	0.020121
noncoding	29732	C29732-	C	-	20	20	B.1.289	0.053191
noncoding	29732	C29732-	C	-	20	20	B.1.575	0.006068
noncoding	29732	C29732-	C	-	20	20	B.1.596	0.001743
noncoding	29732	C29732-	C	-	19	19	AY.92	0.005458
noncoding	29732	C29732T	C	T	19	19	B.1.351.2	0.005749
noncoding	29732	C29732A	C	A	19	19	B.1.617.2	0.000072
noncoding	29732	C29732-	C	-	18	18	AY.20	0.0007
noncoding	29732	C29732A	C	A	18	18	B.1	0.000165
noncoding	29732	C29732-	C	-	18	18	B.1.1.172	0.327273
noncoding	29732	C29732-	C	-	18	18	B.1.1.222	0.003672
noncoding	29732	C29732-	C	-	18	18	B.1.1.307	0.04557
noncoding	29732	C29732-	C	-	18	18	B.1.404	0.023438
noncoding	29732	C29732A	C	A	18	18	B.1.526	0.000423
noncoding	29732	C29732-	C	-	18	18	P.1.14	0.00086
noncoding	29732	C29732-	C	-	17	17	B.1.621	0.001505
noncoding	29732	C29732-	C	-	16	16	AY.45	0.001947
noncoding	29732	C29732-	C	-	16	16	AY.6	0.000658
noncoding	29732	C29732-	C	-	16	16	B.1.1.265	0.050473
noncoding	29732	C29732-	C	-	15	15	AY.119	0.00053
noncoding	29732	C29732T	C	T	15	15	AY.14	0.00132
noncoding	29732	C29732T	C	T	15	15	AY.3	0.000149
noncoding	29732	C29732T	C	T	15	15	B.1.1.317	0.006175
noncoding	29732	C29732T	C	T	14	14	AY.100	0.000644
noncoding	29732	C29732A	C	A	14	14	AY.4	0.000022
noncoding	29732	C29732A	C	A	14	14	AY.44	0.000085
noncoding	29732	C29732-	C	-	14	14	B.1.36.1	0.015964
noncoding	29732	C29732-	C	-	14	14	B.1.36.29	0.007243
noncoding	29732	C29732-	C	-	14	14	C.37	0.001625
noncoding	29732	C29732T	C	T	14	14	R.1	0.00126
noncoding	29732	C29732-	C	-	13	13	AY.118	0.000814
noncoding	29732	C29732-	C	-	13	13	AY.9.1	0.001088
noncoding	29732	C29732T	C	T	13	13	B.1.1.519	0.000516
noncoding	29732	C29732-	C	-	13	13	B.1.36	0.001897
noncoding	29732	C29732T	C	T	13	13	B.1.429	0.000306
noncoding	29732	C29732-	C	-	13	13	P.2	0.002426
noncoding	29732	C29732-	C	-	12	12	B.1.1.416	0.01086
noncoding	29732	C29732-	C	-	11	11	AY.117	0.00093
noncoding	29732	C29732A	C	A	11	11	AY.25	0.000066
noncoding	29732	C29732T	C	T	11	11	AY.61	0.001153
noncoding	29732	C29732-	C	-	11	11	AY.74	0.001272
noncoding	29732	C29732-	C	-	11	11	AY.9.2	0.000404
noncoding	29732	C29732-	C	-	11	11	B.1.1.214	0.00061
noncoding	29732	C29732-	C	-	10	10	AY.75	0.00056
noncoding	29732	C29732-	C	-	10	10	B	0.001278
noncoding	29732	C29732T	C	T	10	10	B.1.1	0.000181
noncoding	29732	C29732-	C	-	10	10	B.1.1.25	0.005685
noncoding	29732	C29732-	C	-	10	10	B.1.1.279	0.011211
noncoding	29732	C29732-	C	-	10	10	B.1.1.33	0.004209
noncoding	29732	C29732G	C	G	10	10	B.1.1.7	0.000009
noncoding	29732	C29732-	C	-	10	10	B.1.177.75	0.010406
noncoding	29732	C29732T	C	T	10	10	P.1.14	0.000478
noncoding	29732	C29732-	C	-	9	9	AY.114	0.00208
noncoding	29732	C29732T	C	T	9	9	AY.6	0.00037
noncoding	29732	C29732-	C	-	9	9	AY.61	0.000943
noncoding	29732	C29732-	C	-	9	9	B.1.160.14	0.019068
noncoding	29732	C29732-	C	-	9	9	B.1.177.62	0.010727
noncoding	29732	C29732-	C	-	9	9	B.1.398	0.026786
noncoding	29732	C29732-	C	-	9	9	B.1.416	0.011421
noncoding	29732	C29732A	C	A	8	8	AY.103	0.00005
noncoding	29732	C29732-	C	-	8	8	AY.23	0.000558
noncoding	29732	C29732-	C	-	8	8	AY.46.4	0.001316
noncoding	29732	C29732-	C	-	8	8	AY.46.5	0.001587
noncoding	29732	C29732-	C	-	8	8	AY.46.6	0.000578
noncoding	29732	C29732-	C	-	8	8	B.1.1.153	0.008762
noncoding	29732	C29732T	C	T	8	8	B.1.160	0.00025
noncoding	29732	C29732T	C	T	8	8	B.1.177.60	0.001747
noncoding	29732	C29732T	C	T	8	8	B.1.351	0.000238
noncoding	29732	C29732T	C	T	8	8	B.1.621	0.000708
noncoding	29732	C29732-	C	-	8	8	C.36.3	0.004538
noncoding	29732	C29732T	C	T	7	7	AY.26	0.000198
noncoding	29732	C29732A	C	A	7	7	AY.43	0.000031
noncoding	29732	C29732T	C	T	7	7	AY.48	0.003256
noncoding	29732	C29732-	C	-	7	7	AY.75.1	0.001262
noncoding	29732	C29732-	C	-	7	7	AY.85	0.00299
noncoding	29732	C29732-	C	-	7	7	B.1.1.39	0.003568
noncoding	29732	C29732-	C	-	7	7	B.1.110.3	0.005029
noncoding	29732	C29732-	C	-	7	7	B.1.160.33	0.030973
noncoding	29732	C29732-	C	-	7	7	B.1.234	0.000924
noncoding	29732	C29732-	C	-	7	7	B.1.36.22	0.008454
noncoding	29732	C29732-	C	-	7	7	B.1.499	0.007353
noncoding	29732	C29732G	C	G	7	7	B.1.526	0.000165
noncoding	29732	C29732T	C	T	7	7	B.1.551	0.009032
noncoding	29732	C29732-	C	-	7	7	B.1.623	0.003755
noncoding	29732	C29732-	C	-	6	6	A	0.002322
noncoding	29732	C29732-	C	-	6	6	AY.13	0.000966
noncoding	29732	C29732-	C	-	6	6	AY.14	0.000528
noncoding	29732	C29732A	C	A	6	6	AY.20	0.000233
noncoding	29732	C29732G	C	G	6	6	AY.25	0.000036
noncoding	29732	C29732T	C	T	6	6	AY.29	0.000095
noncoding	29732	C29732A	C	A	6	6	AY.3	0.00006
noncoding	29732	C29732-	C	-	6	6	AY.34	0.000582
noncoding	29732	C29732-	C	-	6	6	AY.65	0.003198
noncoding	29732	C29732-	C	-	6	6	AY.99.2	0.000553
noncoding	29732	C29732-	C	-	6	6	B.1.1.316	0.00555
noncoding	29732	C29732-	C	-	6	6	B.1.1.37	0.001157
noncoding	29732	C29732-	C	-	6	6	B.1.240	0.001293
noncoding	29732	C29732T	C	T	6	6	B.1.258.11	0.002378
noncoding	29732	C29732-	C	-	6	6	B.1.400	0.002574
noncoding	29732	C29732-	C	-	6	6	B.1.595.1	0.035088
noncoding	29732	C29732T	C	T	6	6	B.1.637	0.000438
noncoding	29732	C29732-	C	-	6	6	B.1.637	0.000438
noncoding	29732	C29732-	C	-	6	6	D.2	0.00045
noncoding	29732	C29732-	C	-	6	6	N.4	0.025532
noncoding	29732	C29732-	C	-	5	5	A.1	0.001409
noncoding	29732	C29732A	C	A	5	5	AY.23	0.000349
noncoding	29732	C29732-	C	-	5	5	AY.46	0.00052
noncoding	29732	C29732T	C	T	5	5	AY.5	0.000103
noncoding	29732	C29732-	C	-	5	5	AY.54	0.000477
noncoding	29732	C29732-	C	-	5	5	AY.9	0.000338
noncoding	29732	C29732-	C	-	5	5	AY.98.1	0.000242
noncoding	29732	C29732-	C	-	5	5	B.1.1.306	0.002192
noncoding	29732	C29732-	C	-	5	5	B.1.1.317	0.002058
noncoding	29732	C29732-	C	-	5	5	B.1.1.318	0.001509
noncoding	29732	C29732-	C	-	5	5	B.1.177.7	0.000824
noncoding	29732	C29732-	C	-	5	5	B.1.389	0.00501
noncoding	29732	C29732T	C	T	5	5	B.1.400	0.002145
noncoding	29732	C29732-	C	-	5	5	B.1.408	0.01845
noncoding	29732	C29732-	C	-	5	5	B.1.595	0.001305
noncoding	29732	C29732-	C	-	5	5	B.1.609	0.002397
noncoding	29732	C29732-	C	-	5	5	Q.1	0.000632
noncoding	29732	C29732A	C	A	4	4	AY.102	0.000106
noncoding	29732	C29732T	C	T	4	4	AY.120	0.000149
noncoding	29732	C29732-	C	-	4	4	AY.30	0.001583
noncoding	29732	C29732-	C	-	4	4	AY.33	0.000267
noncoding	29732	C29732-	C	-	4	4	AY.36	0.000593
noncoding	29732	C29732G	C	G	4	4	B.1	0.000037
noncoding	29732	C29732-	C	-	4	4	B.1.1.189	0.006051
noncoding	29732	C29732T	C	T	4	4	B.1.1.214	0.000222
noncoding	29732	C29732-	C	-	4	4	B.1.1.28	0.001245
noncoding	29732	C29732T	C	T	4	4	B.1.1.347	0.072727
noncoding	29732	C29732-	C	-	4	4	B.1.1.464	0.005891
noncoding	29732	C29732T	C	T	4	4	B.1.1.50	0.002716
noncoding	29732	C29732A	C	A	4	4	B.1.1.50	0.002716
noncoding	29732	C29732G	C	G	4	4	B.1.160	0.000125
noncoding	29732	C29732-	C	-	4	4	B.1.177.60	0.000874
noncoding	29732	C29732-	C	-	4	4	B.1.258.17	0.000416
noncoding	29732	C29732T	C	T	4	4	B.1.311	0.001098
noncoding	29732	C29732T	C	T	4	4	B.1.36.29	0.002069
noncoding	29732	C29732T	C	T	4	4	B.1.497	0.001259
noncoding	29732	C29732T	C	T	4	4	B.1.564	0.001704
noncoding	29732	C29732T	C	T	4	4	B.1.575	0.001214
noncoding	29732	C29732-	C	-	4	4	B.1.582	0.001963
noncoding	29732	C29732-	C	-	4	4	B.1.588	0.00364
noncoding	29732	C29732-	C	-	4	4	B.40	0.001457
noncoding	29732	C29732T	C	T	3	3	AY.102	0.00008
noncoding	29732	C29732-	C	-	3	3	AY.109	0.002219
noncoding	29732	C29732-	C	-	3	3	AY.110	0.000338
noncoding	29732	C29732T	C	T	3	3	AY.119	0.000106
noncoding	29732	C29732-	C	-	3	3	AY.12	0.000948
noncoding	29732	C29732A	C	A	3	3	AY.26	0.000085
noncoding	29732	C29732T	C	T	3	3	AY.39	0.000074
noncoding	29732	C29732-	C	-	3	3	AY.62	0.001307
noncoding	29732	C29732-	C	-	3	3	AY.7	0.000588
noncoding	29732	C29732T	C	T	3	3	AY.9	0.000203
noncoding	29732	C29732T	C	T	3	3	AY.9.2	0.00011
noncoding	29732	C29732T	C	T	3	3	AY.98.1	0.000145
noncoding	29732	C29732-	C	-	3	3	B.1.1.192	0.006928
noncoding	29732	C29732-	C	-	3	3	B.1.1.228	0.009146
noncoding	29732	C29732-	C	-	3	3	B.1.1.236	0.02069
noncoding	29732	C29732T	C	T	3	3	B.1.1.277	0.002276
noncoding	29732	C29732T	C	T	3	3	B.1.1.305	0.011583
noncoding	29732	C29732-	C	-	3	3	B.1.1.337	0.010791
noncoding	29732	C29732T	C	T	3	3	B.1.1.37	0.000579
noncoding	29732	C29732-	C	-	3	3	B.1.1.397	0.006757
noncoding	29732	C29732-	C	-	3	3	B.1.1.428	0.028302
noncoding	29732	C29732-	C	-	3	3	B.1.1.46	0.0131
noncoding	29732	C29732-	C	-	3	3	B.1.1.70	0.001023
noncoding	29732	C29732-	C	-	3	3	B.1.145	0.157895
noncoding	29732	C29732-	C	-	3	3	B.1.177.18	0.00348
noncoding	29732	C29732T	C	T	3	3	B.1.221	0.000213
noncoding	29732	C29732T	C	T	3	3	B.1.258	0.0002
noncoding	29732	C29732T	C	T	3	3	B.1.36	0.000438
noncoding	29732	C29732-	C	-	3	3	B.1.36.16	0.004274
noncoding	29732	C29732-	C	-	3	3	B.1.36.17	0.001482
noncoding	29732	C29732-	C	-	3	3	B.1.36.18	0.001261
noncoding	29732	C29732-	C	-	3	3	B.1.36.31	0.005254
noncoding	29732	C29732-	C	-	3	3	B.1.396	0.002117
noncoding	29732	C29732-	C	-	3	3	B.1.399	0.005803
noncoding	29732	C29732-	C	-	3	3	B.1.416.1	0.004687
noncoding	29732	C29732-	C	-	3	3	B.1.44	0.025
noncoding	29732	C29732-	C	-	3	3	B.1.466.2	0.001174
noncoding	29732	C29732-	C	-	3	3	B.1.517	0.001281
noncoding	29732	C29732A	C	A	3	3	B.4.7	0.030303
noncoding	29732	C29732T	C	T	3	3	C.37	0.000348
noncoding	29732	C29732T	C	T	3	3	P.1.1	0.000953
noncoding	29732	C29732T	C	T	3	3	P.1.10	0.000808
noncoding	29732	C29732-	C	-	3	3	P.1.15	0.000697
noncoding	29732	C29732-	C	-	3	3	P.1.17	0.000485
noncoding	29732	C29732-	C	-	3	3	Q.8	0.000495
noncoding	29732	C29732T	C	T	2	2	A	0.000774
noncoding	29732	C29732-	C	-	2	2	AD.2	0.000438
noncoding	29732	C29732W	C	W	2	2	All	0
noncoding	29732	C29732-	C	-	2	2	AY.106	0.00067
noncoding	29732	C29732-	C	-	2	2	AY.120.2.1	0.000997
noncoding	29732	C29732-	C	-	2	2	AY.19	0.002281
noncoding	29732	C29732T	C	T	2	2	AY.20	0.000078
noncoding	29732	C29732T	C	T	2	2	AY.27	0.000129
noncoding	29732	C29732-	C	-	2	2	AY.3.1	0.000171
noncoding	29732	C29732-	C	-	2	2	AY.35	0.000466
noncoding	29732	C29732T	C	T	2	2	AY.36	0.000296
noncoding	29732	C29732G	C	G	2	2	AY.39	0.000049
noncoding	29732	C29732-	C	-	2	2	AY.39.1	0.000079
noncoding	29732	C29732T	C	T	2	2	AY.4.2.1	0.000298
noncoding	29732	C29732-	C	-	2	2	AY.40	0.001929
noncoding	29732	C29732-	C	-	2	2	AY.46.3	0.001867
noncoding	29732	C29732T	C	T	2	2	AY.46.4	0.000329
noncoding	29732	C29732T	C	T	2	2	AY.47	0.000062
noncoding	29732	C29732A	C	A	2	2	AY.5	0.000041
noncoding	29732	C29732-	C	-	2	2	AY.5.3	0.000675
noncoding	29732	C29732-	C	-	2	2	AY.5.4	0.000553
noncoding	29732	C29732-	C	-	2	2	AY.51	0.001818
noncoding	29732	C29732-	C	-	2	2	AY.56	0.00321
noncoding	29732	C29732A	C	A	2	2	AY.57	0.001312
noncoding	29732	C29732-	C	-	2	2	AY.59	0.001059
noncoding	29732	C29732-	C	-	2	2	AY.84	0.000875
noncoding	29732	C29732-	C	-	2	2	AY.94	0.000885
noncoding	29732	C29732-	C	-	2	2	AY.95	0.001522
noncoding	29732	C29732T	C	T	2	2	AY.99.2	0.000184
noncoding	29732	C29732T	C	T	2	2	B	0.000256
noncoding	29732	C29732G	C	G	2	2	B.1.1	0.000036
noncoding	29732	C29732A	C	A	2	2	B.1.1	0.000036
noncoding	29732	C29732-	C	-	2	2	B.1.1.1	0.000653
noncoding	29732	C29732-	C	-	2	2	B.1.1.170	0.002494
noncoding	29732	C29732-	C	-	2	2	B.1.1.194	0.009901
noncoding	29732	C29732T	C	T	2	2	B.1.1.207	0.002364
noncoding	29732	C29732T	C	T	2	2	B.1.1.280	0.006173
noncoding	29732	C29732-	C	-	2	2	B.1.1.284	0.000215
noncoding	29732	C29732T	C	T	2	2	B.1.1.298	0.001724
noncoding	29732	C29732-	C	-	2	2	B.1.1.305	0.007722
noncoding	29732	C29732T	C	T	2	2	B.1.1.322	0.017544
noncoding	29732	C29732-	C	-	2	2	B.1.1.348	0.001592
noncoding	29732	C29732-	C	-	2	2	B.1.1.354	0.008772
noncoding	29732	C29732T	C	T	2	2	B.1.1.364	0.133333
noncoding	29732	C29732-	C	-	2	2	B.1.1.369	0.000892
noncoding	29732	C29732T	C	T	2	2	B.1.1.39	0.001019
noncoding	29732	C29732T	C	T	2	2	B.1.1.432	0.002532
noncoding	29732	C29732-	C	-	2	2	B.1.1.434	0.000697
noncoding	29732	C29732-	C	-	2	2	B.1.1.50	0.001358
noncoding	29732	C29732A	C	A	2	2	B.1.1.519	0.000079
noncoding	29732	C29732-	C	-	2	2	B.1.1.528	0.009615
noncoding	29732	C29732-	C	-	2	2	B.1.1.63	0.000772
noncoding	29732	C29732-	C	-	2	2	B.1.111	0.00235
noncoding	29732	C29732T	C	T	2	2	B.1.147	0.001512
noncoding	29732	C29732-	C	-	2	2	B.1.160.32	0.008584
noncoding	29732	C29732-	C	-	2	2	B.1.177.32	0.002699
noncoding	29732	C29732-	C	-	2	2	B.1.177.50	0.00939
noncoding	29732	C29732T	C	T	2	2	B.1.177.52	0.003515
noncoding	29732	C29732T	C	T	2	2	B.1.177.62	0.002384
noncoding	29732	C29732-	C	-	2	2	B.1.177.78	0.019417
noncoding	29732	C29732T	C	T	2	2	B.1.177.87	0.001456
noncoding	29732	C29732-	C	-	2	2	B.1.177.87	0.001456
noncoding	29732	C29732G	C	G	2	2	B.1.2	0.000018
noncoding	29732	C29732T	C	T	2	2	B.1.206	0.001631
noncoding	29732	C29732-	C	-	2	2	B.1.206	0.001631
noncoding	29732	C29732-	C	-	2	2	B.1.210	0.004264
noncoding	29732	C29732T	C	T	2	2	B.1.22	0.002635
noncoding	29732	C29732-	C	-	2	2	B.1.23	0.012121
noncoding	29732	C29732T	C	T	2	2	B.1.236	0.004107
noncoding	29732	C29732T	C	T	2	2	B.1.239	0.002442
noncoding	29732	C29732-	C	-	2	2	B.1.298	0.004228
noncoding	29732	C29732T	C	T	2	2	B.1.319	0.006098
noncoding	29732	C29732A	C	A	2	2	B.1.351	0.000059
noncoding	29732	C29732G	C	G	2	2	B.1.36	0.000292
noncoding	29732	C29732T	C	T	2	2	B.1.36.8	0.002
noncoding	29732	C29732-	C	-	2	2	B.1.36.8	0.002
noncoding	29732	C29732T	C	T	2	2	B.1.369	0.00057
noncoding	29732	C29732-	C	-	2	2	B.1.391	0.002255
noncoding	29732	C29732T	C	T	2	2	B.1.404	0.002604
noncoding	29732	C29732T	C	T	2	2	B.1.425	0.005988
noncoding	29732	C29732-	C	-	2	2	B.1.436	0.002058
noncoding	29732	C29732-	C	-	2	2	B.1.441	0.019231
noncoding	29732	C29732A	C	A	2	2	B.1.470	0.002809
noncoding	29732	C29732A	C	A	2	2	B.1.471	0.005464
noncoding	29732	C29732-	C	-	2	2	B.1.509	0.001732
noncoding	29732	C29732W	C	W	2	2	B.1.525	0.000226
noncoding	29732	C29732T	C	T	2	2	B.1.525	0.000226
noncoding	29732	C29732-	C	-	2	2	B.1.568	0.002222
noncoding	29732	C29732-	C	-	2	2	B.1.576	0.001813
noncoding	29732	C29732A	C	A	2	2	B.1.596	0.000174
noncoding	29732	C29732-	C	-	2	2	B.1.617.1	0.000258
noncoding	29732	C29732G	C	G	2	2	B.1.617.2	0.000008
noncoding	29732	C29732-	C	-	2	2	B.1.627	0.00404
noncoding	29732	C29732-	C	-	2	2	B.1.628	0.000705
noncoding	29732	C29732-	C	-	2	2	B.39	0.004662
noncoding	29732	C29732-	C	-	2	2	B.4	0.004415
noncoding	29732	C29732A	C	A	2	2	B.4	0.004415
noncoding	29732	C29732T	C	T	2	2	B.6	0.00182
noncoding	29732	C29732T	C	T	2	2	C.36	0.001821
noncoding	29732	C29732-	C	-	2	2	C.38	0.016129
noncoding	29732	C29732-	C	-	2	2	N.5	0.003534
noncoding	29732	C29732-	C	-	2	2	P.1.10	0.000539
noncoding	29732	C29732-	C	-	2	2	P.1.13	0.001797
noncoding	29732	C29732T	C	T	2	2	P.1.8	0.009569
noncoding	29732	C29732-	C	-	2	2	Q.4	0.00091
noncoding	29732	C29732G	C	G	1	1	A.1	0.000282
noncoding	29732	C29732-	C	-	1	1	A.2.3	0.004739
noncoding	29732	C29732-	C	-	1	1	A.2.5	0.000499
noncoding	29732	C29732-	C	-	1	1	A.23.1	0.000704
noncoding	29732	C29732-	C	-	1	1	A.30	0.142857
noncoding	29732	C29732T	C	T	1	1	AE.8	0.000489
noncoding	29732	C29732-	C	-	1	1	AK.2	0.045455
noncoding	29732	C29732B	C	B	1	1	All	0
noncoding	29732	C29732R	C	R	1	1	All	0
noncoding	29732	C29732K	C	K	1	1	All	0
noncoding	29732	C29732H	C	H	1	1	All	0
noncoding	29732	C29732A	C	A	1	1	AP.1	0.001502
noncoding	29732	C29732-	C	-	1	1	AU.1	0.001266
noncoding	29732	C29732-	C	-	1	1	AY.10	0.00053
noncoding	29732	C29732A	C	A	1	1	AY.100	0.000046
noncoding	29732	C29732T	C	T	1	1	AY.104	0.001984
noncoding	29732	C29732-	C	-	1	1	AY.105	0.000643
noncoding	29732	C29732-	C	-	1	1	AY.108	0.001103
noncoding	29732	C29732T	C	T	1	1	AY.110	0.000113
noncoding	29732	C29732-	C	-	1	1	AY.111	0.000183
noncoding	29732	C29732T	C	T	1	1	AY.118	0.000063
noncoding	29732	C29732T	C	T	1	1	AY.12	0.000316
noncoding	29732	C29732-	C	-	1	1	AY.120.1	0.000321
noncoding	29732	C29732T	C	T	1	1	AY.120.2.1	0.000498
noncoding	29732	C29732A	C	A	1	1	AY.16	0.00038
noncoding	29732	C29732-	C	-	1	1	AY.16	0.00038
noncoding	29732	C29732T	C	T	1	1	AY.23	0.00007
noncoding	29732	C29732T	C	T	1	1	AY.23.1	0.000417
noncoding	29732	C29732G	C	G	1	1	AY.26	0.000028
noncoding	29732	C29732-	C	-	1	1	AY.27	0.000065
noncoding	29732	C29732-	C	-	1	1	AY.29.1	0.000221
noncoding	29732	C29732G	C	G	1	1	AY.3	0.00001
noncoding	29732	C29732T	C	T	1	1	AY.3.1	0.000085
noncoding	29732	C29732A	C	A	1	1	AY.34	0.000097
noncoding	29732	C29732A	C	A	1	1	AY.39	0.000025
noncoding	29732	C29732T	C	T	1	1	AY.4.2	0.000022
noncoding	29732	C29732T	C	T	1	1	AY.4.5	0.000107
noncoding	29732	C29732G	C	G	1	1	AY.43	0.000004
noncoding	29732	C29732G	C	G	1	1	AY.44	0.000006
noncoding	29732	C29732A	C	A	1	1	AY.46.1	0.001027
noncoding	29732	C29732T	C	T	1	1	AY.46.6	0.000072
noncoding	29732	C29732A	C	A	1	1	AY.47	0.000031
noncoding	29732	C29732-	C	-	1	1	AY.48	0.000465
noncoding	29732	C29732G	C	G	1	1	AY.5	0.000021
noncoding	29732	C29732T	C	T	1	1	AY.5.4	0.000277
noncoding	29732	C29732-	C	-	1	1	AY.52	0.000814
noncoding	29732	C29732T	C	T	1	1	AY.55	0.000917
noncoding	29732	C29732-	C	-	1	1	AY.55	0.000917
noncoding	29732	C29732T	C	T	1	1	AY.60	0.000938
noncoding	29732	C29732T	C	T	1	1	AY.65	0.000533
noncoding	29732	C29732-	C	-	1	1	AY.66	0.00107
noncoding	29732	C29732A	C	A	1	1	AY.69	0.000187
noncoding	29732	C29732T	C	T	1	1	AY.69	0.000187
noncoding	29732	C29732T	C	T	1	1	AY.7	0.000196
noncoding	29732	C29732-	C	-	1	1	AY.81	0.001992
noncoding	29732	C29732T	C	T	1	1	AY.85	0.000427
noncoding	29732	C29732-	C	-	1	1	AY.87	0.000833
noncoding	29732	C29732-	C	-	1	1	AY.91	0.00073
noncoding	29732	C29732T	C	T	1	1	AY.92	0.000287
noncoding	29732	C29732G	C	G	1	1	AY.93	0.000273
noncoding	29732	C29732A	C	A	1	1	AY.98	0.000079
noncoding	29732	C29732-	C	-	1	1	AZ.1	0.000867
noncoding	29732	C29732-	C	-	1	1	B.1.1.10	0.001115
noncoding	29732	C29732T	C	T	1	1	B.1.1.135	0.004695
noncoding	29732	C29732T	C	T	1	1	B.1.1.170	0.001247
noncoding	29732	C29732-	C	-	1	1	B.1.1.174	0.003378
noncoding	29732	C29732T	C	T	1	1	B.1.1.186	0.003436
noncoding	29732	C29732-	C	-	1	1	B.1.1.196	0.005714
noncoding	29732	C29732-	C	-	1	1	B.1.1.197	0.037037
noncoding	29732	C29732-	C	-	1	1	B.1.1.198	0.001468
noncoding	29732	C29732-	C	-	1	1	B.1.1.216	0.00089
noncoding	29732	C29732-	C	-	1	1	B.1.1.218	0.007692
noncoding	29732	C29732T	C	T	1	1	B.1.1.222	0.000204
noncoding	29732	C29732-	C	-	1	1	B.1.1.229	0.005747
noncoding	29732	C29732T	C	T	1	1	B.1.1.27	0.00565
noncoding	29732	C29732-	C	-	1	1	B.1.1.277	0.000759
noncoding	29732	C29732A	C	A	1	1	B.1.1.28	0.000311
noncoding	29732	C29732-	C	-	1	1	B.1.1.286	0.002899
noncoding	29732	C29732T	C	T	1	1	B.1.1.291	0.000742
noncoding	29732	C29732-	C	-	1	1	B.1.1.294	0.001266
noncoding	29732	C29732-	C	-	1	1	B.1.1.298	0.000862
noncoding	29732	C29732T	C	T	1	1	B.1.1.301	0.001179
noncoding	29732	C29732G	C	G	1	1	B.1.1.311	0.000358
noncoding	29732	C29732T	C	T	1	1	B.1.1.318	0.000302
noncoding	29732	C29732T	C	T	1	1	B.1.1.326	0.001761
noncoding	29732	C29732A	C	A	1	1	B.1.1.33	0.000421
noncoding	29732	C29732-	C	-	1	1	B.1.1.339	0.010526
noncoding	29732	C29732-	C	-	1	1	B.1.1.372	0.000689
noncoding	29732	C29732G	C	G	1	1	B.1.1.389	0.006061
noncoding	29732	C29732-	C	-	1	1	B.1.1.389	0.006061
noncoding	29732	C29732T	C	T	1	1	B.1.1.429	0.004608
noncoding	29732	C29732-	C	-	1	1	B.1.1.432	0.001266
noncoding	29732	C29732-	C	-	1	1	B.1.1.47	0.005348
noncoding	29732	C29732-	C	-	1	1	B.1.1.517	0.006803
noncoding	29732	C29732G	C	G	1	1	B.1.1.519	0.00004
noncoding	29732	C29732G	C	G	1	1	B.1.1.521	0.005348
noncoding	29732	C29732G	C	G	1	1	B.1.1.63	0.000386
noncoding	29732	C29732T	C	T	1	1	B.1.1.70	0.000341
noncoding	29732	C29732-	C	-	1	1	B.1.1.71	0.006061
noncoding	29732	C29732G	C	G	1	1	B.1.104	0.00369
noncoding	29732	C29732-	C	-	1	1	B.1.139	0.000733
noncoding	29732	C29732A	C	A	1	1	B.1.160	0.000031
noncoding	29732	C29732A	C	A	1	1	B.1.177	0.000013
noncoding	29732	C29732G	C	G	1	1	B.1.177.32	0.00135
noncoding	29732	C29732-	C	-	1	1	B.1.177.44	0.000519
noncoding	29732	C29732-	C	-	1	1	B.1.177.51	0.004566
noncoding	29732	C29732-	C	-	1	1	B.1.177.53	0.002392
noncoding	29732	C29732-	C	-	1	1	B.1.177.57	0.000281
noncoding	29732	C29732T	C	T	1	1	B.1.177.58	0.001332
noncoding	29732	C29732-	C	-	1	1	B.1.177.6	0.000977
noncoding	29732	C29732T	C	T	1	1	B.1.177.63	0.002703
noncoding	29732	C29732-	C	-	1	1	B.1.177.65	0.000665
noncoding	29732	C29732G	C	G	1	1	B.1.177.73	0.000566
noncoding	29732	C29732T	C	T	1	1	B.1.177.81	0.000189
noncoding	29732	C29732T	C	T	1	1	B.1.177.83	0.001481
noncoding	29732	C29732-	C	-	1	1	B.1.177.86	0.000183
noncoding	29732	C29732-	C	-	1	1	B.1.180	0.05
noncoding	29732	C29732-	C	-	1	1	B.1.192	0.009259
noncoding	29732	C29732T	C	T	1	1	B.1.210	0.002132
noncoding	29732	C29732G	C	G	1	1	B.1.221	0.000071
noncoding	29732	C29732-	C	-	1	1	B.1.222	0.001692
noncoding	29732	C29732T	C	T	1	1	B.1.237	0.004975
noncoding	29732	C29732T	C	T	1	1	B.1.240	0.000216
noncoding	29732	C29732-	C	-	1	1	B.1.241	0.000812
noncoding	29732	C29732A	C	A	1	1	B.1.243	0.00007
noncoding	29732	C29732A	C	A	1	1	B.1.258	0.000067
noncoding	29732	C29732-	C	-	1	1	B.1.258.16	0.001637
noncoding	29732	C29732T	C	T	1	1	B.1.258.17	0.000104
noncoding	29732	C29732T	C	T	1	1	B.1.258.7	0.001912
noncoding	29732	C29732-	C	-	1	1	B.1.291	0.019231
noncoding	29732	C29732-	C	-	1	1	B.1.311	0.000275
noncoding	29732	C29732T	C	T	1	1	B.1.349	0.000715
noncoding	29732	C29732G	C	G	1	1	B.1.351	0.00003
noncoding	29732	C29732-	C	-	1	1	B.1.351.3	0.000876
noncoding	29732	C29732T	C	T	1	1	B.1.36.1	0.00114
noncoding	29732	C29732T	C	T	1	1	B.1.36.19	0.009259
noncoding	29732	C29732-	C	-	1	1	B.1.36.19	0.009259
noncoding	29732	C29732T	C	T	1	1	B.1.36.26	0.002857
noncoding	29732	C29732T	C	T	1	1	B.1.36.27	0.000763
noncoding	29732	C29732-	C	-	1	1	B.1.36.37	0.002778
noncoding	29732	C29732-	C	-	1	1	B.1.362	0.001541
noncoding	29732	C29732T	C	T	1	1	B.1.367	0.000792
noncoding	29732	C29732-	C	-	1	1	B.1.369	0.000285
noncoding	29732	C29732A	C	A	1	1	B.1.371	0.001122
noncoding	29732	C29732T	C	T	1	1	B.1.403	0.003268
noncoding	29732	C29732-	C	-	1	1	B.1.422	0.000812
noncoding	29732	C29732T	C	T	1	1	B.1.436	0.001029
noncoding	29732	C29732T	C	T	1	1	B.1.438.1	0.000107
noncoding	29732	C29732A	C	A	1	1	B.1.438.1	0.000107
noncoding	29732	C29732-	C	-	1	1	B.1.442	0.035714
noncoding	29732	C29732-	C	-	1	1	B.1.443	0.004673
noncoding	29732	C29732T	C	T	1	1	B.1.459	0.004082
noncoding	29732	C29732A	C	A	1	1	B.1.466.2	0.000391
noncoding	29732	C29732T	C	T	1	1	B.1.468	0.005714
noncoding	29732	C29732-	C	-	1	1	B.1.470	0.001404
noncoding	29732	C29732-	C	-	1	1	B.1.493	0.025641
noncoding	29732	C29732A	C	A	1	1	B.1.497	0.000315
noncoding	29732	C29732T	C	T	1	1	B.1.521	0.004975
noncoding	29732	C29732K	C	K	1	1	B.1.525	0.000113
noncoding	29732	C29732H	C	H	1	1	B.1.525	0.000113
noncoding	29732	C29732B	C	B	1	1	B.1.525	0.000113
noncoding	29732	C29732R	C	R	1	1	B.1.525	0.000113
noncoding	29732	C29732A	C	A	1	1	B.1.525	0.000113
noncoding	29732	C29732T	C	T	1	1	B.1.549	0.007194
noncoding	29732	C29732-	C	-	1	1	B.1.551	0.00129
noncoding	29732	C29732-	C	-	1	1	B.1.561	0.000397
noncoding	29732	C29732-	C	-	1	1	B.1.564.1	0.001577
noncoding	29732	C29732-	C	-	1	1	B.1.577	0.000687
noncoding	29732	C29732A	C	A	1	1	B.1.580	0.004065
noncoding	29732	C29732T	C	T	1	1	B.1.582	0.000491
noncoding	29732	C29732T	C	T	1	1	B.1.587	0.001898
noncoding	29732	C29732T	C	T	1	1	B.1.596	0.000087
noncoding	29732	C29732-	C	-	1	1	B.1.597	0.00463
noncoding	29732	C29732T	C	T	1	1	B.1.600	0.005848
noncoding	29732	C29732-	C	-	1	1	B.1.600	0.005848
noncoding	29732	C29732T	C	T	1	1	B.1.609	0.000479
noncoding	29732	C29732A	C	A	1	1	B.1.609	0.000479
noncoding	29732	C29732T	C	T	1	1	B.1.617.1	0.000129
noncoding	29732	C29732A	C	A	1	1	B.1.617.1	0.000129
noncoding	29732	C29732-	C	-	1	1	B.1.617.3	0.002985
noncoding	29732	C29732-	C	-	1	1	B.1.619	0.000871
noncoding	29732	C29732-	C	-	1	1	B.1.620	0.000946
noncoding	29732	C29732T	C	T	1	1	B.1.628	0.000352
noncoding	29732	C29732-	C	-	1	1	B.1.633	0.041667
noncoding	29732	C29732T	C	T	1	1	B.11	0.005128
noncoding	29732	C29732-	C	-	1	1	B.3	0.000831
noncoding	29732	C29732T	C	T	1	1	B.3	0.000831
noncoding	29732	C29732-	C	-	1	1	B.3.1	0.001658
noncoding	29732	C29732-	C	-	1	1	B.31	0.003731
noncoding	29732	C29732-	C	-	1	1	B.55	0.00295
noncoding	29732	C29732-	C	-	1	1	B.6	0.00091
noncoding	29732	C29732T	C	T	1	1	B.6.6	0.000889
noncoding	29732	C29732-	C	-	1	1	C.36	0.000911
noncoding	29732	C29732G	C	G	1	1	D.2	0.000075
noncoding	29732	C29732A	C	A	1	1	N.9	0.005952
noncoding	29732	C29732-	C	-	1	1	P.1.1	0.000318
noncoding	29732	C29732A	C	A	1	1	P.1.12	0.000484
noncoding	29732	C29732T	C	T	1	1	P.1.17	0.000162
noncoding	29732	C29732-	C	-	1	1	P.1.2	0.001156
noncoding	29732	C29732T	C	T	1	1	P.1.2	0.001156
noncoding	29732	C29732-	C	-	1	1	P.1.4	0.000977
noncoding	29732	C29732T	C	T	1	1	P.1.7	0.000319
noncoding	29732	C29732A	C	A	1	1	P.1.7	0.000319
noncoding	29732	C29732-	C	-	1	1	P.1.7	0.000319
noncoding	29732	C29732T	C	T	1	1	P.3	0.001595
noncoding	29732	C29732T	C	T	1	1	P.5	0.013699
noncoding	29732	C29732-	C	-	1	1	P.6	0.003145
noncoding	29732	C29732-	C	-	1	1	P.7	0.004367
noncoding	29732	C29732-	C	-	1	1	Q.2	0.000613
noncoding	29732	C29732-	C	-	1	1	Q.3	0.000145
noncoding	29732	C29732T	C	T	1	1	Q.4	0.000455
noncoding	29732	C29732-	C	-	1	1	W.1	0.008696
noncoding	29732	C29732-	C	-	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.