CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29731 & Codon = C

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29731A29731CnoncodingAC4040129731-29731

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29731A29731CAC4040All0.000008
noncoding29731A29731CAC1414AY.4.50.001505
noncoding29731A29731CAC77B.1.1.70.000006
noncoding29731A29731CAC44AY.270.000259
noncoding29731A29731CAC22B.10.000018
noncoding29731A29731CAC22B.1.1.4160.00181
noncoding29731A29731CAC22B.1.1.5190.000079
noncoding29731A29731CAC11AY.1040.001984
noncoding29731A29731CAC11AY.430.000004
noncoding29731A29731CAC11B.1.1.3890.006061
noncoding29731A29731CAC11B.1.177.350.000691
noncoding29731A29731CAC11B.1.20.000009
noncoding29731A29731CAC11B.1.3710.001122
noncoding29731A29731CAC11B.1.4160.001269
noncoding29731A29731CAC11B.1.617.10.000129
noncoding29731A29731CAC11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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