CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29717 & Codon = A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29717G29717AnoncodingGA29742974129717-29717

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29717G29717AGA29742974All0.000569
noncoding29717G29717AGA731731AY.800.825056
noncoding29717G29717AGA647647B.1.1.70.000579
noncoding29717G29717AGA302302B.1.1.1980.443465
noncoding29717G29717AGA206206AY.40.000321
noncoding29717G29717AGA8989B.1.617.20.000335
noncoding29717G29717AGA6161AY.1190.002154
noncoding29717G29717AGA5353AY.250.000319
noncoding29717G29717AGA4444AY.1030.000273
noncoding29717G29717AGA4343AY.260.001217
noncoding29717G29717AGA4343AY.440.000262
noncoding29717G29717AGA4343B.1.4270.002171
noncoding29717G29717AGA4242AY.290.000662
noncoding29717G29717AGA4242B.10.000385
noncoding29717G29717AGA3939B.1.1770.000514
noncoding29717G29717AGA3636B.1.10.000653
noncoding29717G29717AGA3131B.1.1.2220.006324
noncoding29717G29717AGA2828AY.9.10.002344
noncoding29717G29717AGA2525AY.4.20.000542
noncoding29717G29717AGA2323B.1.20.000203
noncoding29717G29717AGA2121AY.420.000845
noncoding29717G29717AGA1919AY.430.000084
noncoding29717G29717AGA1919AY.50.000392
noncoding29717G29717AGA1919B.1.2430.001322
noncoding29717G29717AGA1717AY.9.20.000624
noncoding29717G29717AGA1515AY.360.002223
noncoding29717G29717AGA1515AY.4.40.006137
noncoding29717G29717AGA1414AY.1020.000371
noncoding29717G29717AGA1111B.1.3510.000327
noncoding29717G29717AGA99AY.390.000222
noncoding29717G29717AGA99B.1.1.390.004587
noncoding29717G29717AGA99B.1.2580.000599
noncoding29717G29717AGA99B.1.5260.000212
noncoding29717G29717AGA88AY.30.00008
noncoding29717G29717AGA88AY.330.000534
noncoding29717G29717AGA88B.1.617.10.001032
noncoding29717G29717AGA77AY.200.000272
noncoding29717G29717AGA77B.1.1.280.002179
noncoding29717G29717AGA66AY.1000.000276
noncoding29717G29717AGA66AY.1180.000376
noncoding29717G29717AGA66AY.60.000247
noncoding29717G29717AGA66B.1.6230.003219
noncoding29717G29717AGA55P.10.000079
noncoding29717G29717AGA44AY.1170.000338
noncoding29717G29717AGA44AY.1210.000541
noncoding29717G29717AGA44AY.370.001264
noncoding29717G29717AGA44AY.540.000381
noncoding29717G29717AGA44AY.90.00027
noncoding29717G29717AGA44AY.980.000316
noncoding29717G29717AGA44AY.99.20.000369
noncoding29717G29717AGA44B.1.1.5190.000159
noncoding29717G29717AGA44B.1.1600.000125
noncoding29717G29717AGA44B.1.4200.041667
noncoding29717G29717AGA44B.1.5960.000349
noncoding29717G29717AGA33AY.1200.000112
noncoding29717G29717AGA33AY.23.10.001252
noncoding29717G29717AGA33AY.450.000365
noncoding29717G29717AGA33AY.690.00056
noncoding29717G29717AGA33AY.830.005172
noncoding29717G29717AGA33AY.900.002053
noncoding29717G29717AGA33B.1.1.2690.00406
noncoding29717G29717AGA33B.1.1.3060.001315
noncoding29717G29717AGA33B.1.1.4860.004732
noncoding29717G29717AGA33B.1.360.000438
noncoding29717G29717AGA33B.1.4290.000071
noncoding29717G29717AGA33B.1.6210.000266
noncoding29717G29717AGA33P.1.170.000485
noncoding29717G29717AGA22A.2.50.000998
noncoding29717G29717AGA22AY.1160.000574
noncoding29717G29717AGA22AY.230.000139
noncoding29717G29717AGA22AY.29.10.000441
noncoding29717G29717AGA22AY.3.10.000171
noncoding29717G29717AGA22AY.300.000791
noncoding29717G29717AGA22AY.39.10.000079
noncoding29717G29717AGA22AY.4.50.000215
noncoding29717G29717AGA22AY.470.000062
noncoding29717G29717AGA22AY.590.001059
noncoding29717G29717AGA22AY.640.00119
noncoding29717G29717AGA22AY.7.10.000225
noncoding29717G29717AGA22AY.98.10.000097
noncoding29717G29717AGA22B.1.1.2140.000111
noncoding29717G29717AGA22B.1.1.3170.000823
noncoding29717G29717AGA22B.1.1.330.000842
noncoding29717G29717AGA22B.1.1.700.000682
noncoding29717G29717AGA22B.1.2210.000142
noncoding29717G29717AGA22B.1.36.80.002
noncoding29717G29717AGA22B.1.6370.000146
noncoding29717G29717AGA22C.370.000232
noncoding29717G29717AGA22P.1.140.000096
noncoding29717G29717AGA22Q.80.00033
noncoding29717G29717AGA11A.250.018182
noncoding29717G29717AGA11AT.10.005128
noncoding29717G29717AGA11AY.10.000396
noncoding29717G29717AGA11AY.1060.000335
noncoding29717G29717AGA11AY.1090.00074
noncoding29717G29717AGA11AY.1110.000183
noncoding29717G29717AGA11AY.120.2.10.000498
noncoding29717G29717AGA11AY.130.000161
noncoding29717G29717AGA11AY.150.002222
noncoding29717G29717AGA11AY.16.10.00047
noncoding29717G29717AGA11AY.270.000065
noncoding29717G29717AGA11AY.320.000532
noncoding29717G29717AGA11AY.340.000097
noncoding29717G29717AGA11AY.4.2.10.000149
noncoding29717G29717AGA11AY.46.60.000072
noncoding29717G29717AGA11AY.5.40.000277
noncoding29717G29717AGA11AY.600.000938
noncoding29717G29717AGA11AY.610.000105
noncoding29717G29717AGA11AY.650.000533
noncoding29717G29717AGA11AY.730.000665
noncoding29717G29717AGA11AY.750.000056
noncoding29717G29717AGA11AY.75.10.00018
noncoding29717G29717AGA11AY.920.000287
noncoding29717G29717AGA11B.1.1.10.000327
noncoding29717G29717AGA11B.1.1.1610.003534
noncoding29717G29717AGA11B.1.1.250.000569
noncoding29717G29717AGA11B.1.1.3180.000302
noncoding29717G29717AGA11B.1.1.3220.008772
noncoding29717G29717AGA11B.1.1.3800.009804
noncoding29717G29717AGA11B.1.1.4660.008696
noncoding29717G29717AGA11B.1.1180.006711
noncoding29717G29717AGA11B.1.160.70.002079
noncoding29717G29717AGA11B.1.177.320.00135
noncoding29717G29717AGA11B.1.177.40.000211
noncoding29717G29717AGA11B.1.177.400.005155
noncoding29717G29717AGA11B.1.177.440.000519
noncoding29717G29717AGA11B.1.177.560.000668
noncoding29717G29717AGA11B.1.177.60.000977
noncoding29717G29717AGA11B.1.177.70.000165
noncoding29717G29717AGA11B.1.177.80.000752
noncoding29717G29717AGA11B.1.177.870.000728
noncoding29717G29717AGA11B.1.221.30.000833
noncoding29717G29717AGA11B.1.2340.000132
noncoding29717G29717AGA11B.1.2390.001221
noncoding29717G29717AGA11B.1.2400.000216
noncoding29717G29717AGA11B.1.258.110.000396
noncoding29717G29717AGA11B.1.258.170.000104
noncoding29717G29717AGA11B.1.36.290.000517
noncoding29717G29717AGA11B.1.4160.001269
noncoding29717G29717AGA11B.1.438.10.000107
noncoding29717G29717AGA11B.1.4530.003236
noncoding29717G29717AGA11B.1.4700.001404
noncoding29717G29717AGA11B.1.5170.000427
noncoding29717G29717AGA11B.1.5400.009709
noncoding29717G29717AGA11B.1.5660.019231
noncoding29717G29717AGA11B.1.5760.000907
noncoding29717G29717AGA11B.1.6160.02439
noncoding29717G29717AGA11B.1.6280.000352
noncoding29717G29717AGA11B.410.008
noncoding29717G29717AGA11B.6.60.000889
noncoding29717G29717AGA11C.36.30.000567
noncoding29717G29717AGA11P.1.150.000232
noncoding29717G29717AGA11P.20.000187
noncoding29717G29717AGA11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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