CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29717

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29717G29717AnoncodingGA29742974129717-29717
noncoding29717G29717-noncodingG-11851185129717-29717
noncoding29717G29717TnoncodingGT641641129717-29717
noncoding29717G29717CnoncodingGC2525129717-29717

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29717G29717AGA29742974All0.000569
noncoding29717G29717-G-11851185All0.000227
noncoding29717G29717-G-817817AY.380.407888
noncoding29717G29717AGA731731AY.800.825056
noncoding29717G29717AGA647647B.1.1.70.000579
noncoding29717G29717TGT641641All0.000123
noncoding29717G29717AGA302302B.1.1.1980.443465
noncoding29717G29717AGA206206AY.40.000321
noncoding29717G29717TGT148148B.1.1.70.000132
noncoding29717G29717AGA8989B.1.617.20.000335
noncoding29717G29717TGT6969AY.430.000306
noncoding29717G29717AGA6161AY.1190.002154
noncoding29717G29717TGT5555AY.40.000086
noncoding29717G29717AGA5353AY.250.000319
noncoding29717G29717TGT5151AY.440.00031
noncoding29717G29717AGA4444AY.1030.000273
noncoding29717G29717AGA4343AY.260.001217
noncoding29717G29717AGA4343AY.440.000262
noncoding29717G29717AGA4343B.1.4270.002171
noncoding29717G29717AGA4242AY.290.000662
noncoding29717G29717AGA4242B.10.000385
noncoding29717G29717TGT4040B.1.617.20.000151
noncoding29717G29717AGA3939B.1.1770.000514
noncoding29717G29717AGA3636B.1.10.000653
noncoding29717G29717-G-3535B.1.1.70.000031
noncoding29717G29717AGA3131B.1.1.2220.006324
noncoding29717G29717AGA2828AY.9.10.002344
noncoding29717G29717CGC2525All0.000005
noncoding29717G29717AGA2525AY.4.20.000542
noncoding29717G29717AGA2323B.1.20.000203
noncoding29717G29717-G-2222B.1.617.20.000083
noncoding29717G29717AGA2121AY.420.000845
noncoding29717G29717TGT2121B.1.3980.0625
noncoding29717G29717TGT1919AY.290.0003
noncoding29717G29717AGA1919AY.430.000084
noncoding29717G29717AGA1919AY.50.000392
noncoding29717G29717-G-1919AY.920.005458
noncoding29717G29717AGA1919B.1.2430.001322
noncoding29717G29717-G-1717AY.40.000026
noncoding29717G29717AGA1717AY.9.20.000624
noncoding29717G29717-G-1616AY.290.000252
noncoding29717G29717TGT1616P.10.000252
noncoding29717G29717AGA1515AY.360.002223
noncoding29717G29717AGA1515AY.4.40.006137
noncoding29717G29717TGT1515B.1.1.5190.000596
noncoding29717G29717AGA1414AY.1020.000371
noncoding29717G29717TGT1313AY.30.000129
noncoding29717G29717-G-1111AY.250.000066
noncoding29717G29717-G-1111AY.30.000109
noncoding29717G29717AGA1111B.1.3510.000327
noncoding29717G29717-G-1010AY.440.000061
noncoding29717G29717TGT1010B.1.5260.000235
noncoding29717G29717TGT99AY.1030.000056
noncoding29717G29717AGA99AY.390.000222
noncoding29717G29717-G-99AY.390.000222
noncoding29717G29717AGA99B.1.1.390.004587
noncoding29717G29717AGA99B.1.2580.000599
noncoding29717G29717AGA99B.1.5260.000212
noncoding29717G29717TGT88A.2.5.20.012579
noncoding29717G29717AGA88AY.30.00008
noncoding29717G29717AGA88AY.330.000534
noncoding29717G29717-G-88B.10.000073
noncoding29717G29717TGT88B.1.2210.000568
noncoding29717G29717-G-88B.1.4290.000188
noncoding29717G29717AGA88B.1.617.10.001032
noncoding29717G29717AGA77AY.200.000272
noncoding29717G29717TGT77AY.350.001631
noncoding29717G29717TGT77AY.470.000218
noncoding29717G29717AGA77B.1.1.280.002179
noncoding29717G29717-G-77B.1.1.460.030568
noncoding29717G29717-G-77B.1.160.330.030973
noncoding29717G29717-G-77B.1.2100.014925
noncoding29717G29717AGA66AY.1000.000276
noncoding29717G29717TGT66AY.1020.000159
noncoding29717G29717-G-66AY.1030.000037
noncoding29717G29717AGA66AY.1180.000376
noncoding29717G29717TGT66AY.250.000036
noncoding29717G29717TGT66AY.330.000401
noncoding29717G29717TGT66AY.420.000241
noncoding29717G29717-G-66AY.430.000027
noncoding29717G29717AGA66AY.60.000247
noncoding29717G29717TGT66B.10.000055
noncoding29717G29717-G-66B.1.20.000053
noncoding29717G29717AGA66B.1.6230.003219
noncoding29717G29717-G-55AY.450.000608
noncoding29717G29717-G-55AY.470.000156
noncoding29717G29717-G-55AY.750.00028
noncoding29717G29717TGT55B.1.10.000091
noncoding29717G29717TGT55B.1.20.000044
noncoding29717G29717-G-55B.1.4080.01845
noncoding29717G29717-G-55B.1.4270.000252
noncoding29717G29717TGT55D.20.000375
noncoding29717G29717AGA55P.10.000079
noncoding29717G29717AGA44AY.1170.000338
noncoding29717G29717TGT44AY.1200.000149
noncoding29717G29717AGA44AY.1210.000541
noncoding29717G29717TGT44AY.260.000113
noncoding29717G29717AGA44AY.370.001264
noncoding29717G29717-G-44AY.50.000083
noncoding29717G29717AGA44AY.540.000381
noncoding29717G29717AGA44AY.90.00027
noncoding29717G29717AGA44AY.980.000316
noncoding29717G29717AGA44AY.99.20.000369
noncoding29717G29717-G-44B.1.10.000073
noncoding29717G29717AGA44B.1.1.5190.000159
noncoding29717G29717AGA44B.1.1600.000125
noncoding29717G29717-G-44B.1.1770.000053
noncoding29717G29717TGT44B.1.258.170.000416
noncoding29717G29717AGA44B.1.4200.041667
noncoding29717G29717AGA44B.1.5960.000349
noncoding29717G29717-G-33AY.1090.002219
noncoding29717G29717-G-33AY.1190.000106
noncoding29717G29717AGA33AY.1200.000112
noncoding29717G29717AGA33AY.23.10.001252
noncoding29717G29717TGT33AY.390.000074
noncoding29717G29717TGT33AY.4.20.000065
noncoding29717G29717AGA33AY.450.000365
noncoding29717G29717-G-33AY.540.000286
noncoding29717G29717-G-33AY.610.000314
noncoding29717G29717-G-33AY.650.001599
noncoding29717G29717AGA33AY.690.00056
noncoding29717G29717AGA33AY.830.005172
noncoding29717G29717AGA33AY.900.002053
noncoding29717G29717-G-33B0.000383
noncoding29717G29717AGA33B.1.1.2690.00406
noncoding29717G29717-G-33B.1.1.3060.001315
noncoding29717G29717AGA33B.1.1.3060.001315
noncoding29717G29717AGA33B.1.1.4860.004732
noncoding29717G29717CGC33B.1.1.70.000003
noncoding29717G29717TGT33B.1.1.700.001023
noncoding29717G29717-G-33B.1.1600.000094
noncoding29717G29717TGT33B.1.1770.00004
noncoding29717G29717-G-33B.1.2210.000213
noncoding29717G29717TGT33B.1.3510.000089
noncoding29717G29717TGT33B.1.351.20.000908
noncoding29717G29717AGA33B.1.360.000438
noncoding29717G29717TGT33B.1.3690.000856
noncoding29717G29717AGA33B.1.4290.000071
noncoding29717G29717TGT33B.1.4290.000071
noncoding29717G29717-G-33B.1.440.025
noncoding29717G29717-G-33B.1.5950.000783
noncoding29717G29717AGA33B.1.6210.000266
noncoding29717G29717-G-33P.10.000047
noncoding29717G29717AGA33P.1.170.000485
noncoding29717G29717-G-22A0.000774
noncoding29717G29717AGA22A.2.50.000998
noncoding29717G29717CGC22AY.1000.000092
noncoding29717G29717-G-22AY.1020.000053
noncoding29717G29717-G-22AY.1140.000462
noncoding29717G29717AGA22AY.1160.000574
noncoding29717G29717TGT22AY.1190.000071
noncoding29717G29717-G-22AY.200.000078
noncoding29717G29717-G-22AY.230.000139
noncoding29717G29717AGA22AY.230.000139
noncoding29717G29717AGA22AY.29.10.000441
noncoding29717G29717AGA22AY.3.10.000171
noncoding29717G29717AGA22AY.300.000791
noncoding29717G29717CGC22AY.39.10.000079
noncoding29717G29717AGA22AY.39.10.000079
noncoding29717G29717AGA22AY.4.50.000215
noncoding29717G29717TGT22AY.460.000208
noncoding29717G29717AGA22AY.470.000062
noncoding29717G29717-G-22AY.5.30.000675
noncoding29717G29717AGA22AY.590.001059
noncoding29717G29717AGA22AY.640.00119
noncoding29717G29717-G-22AY.70.000392
noncoding29717G29717AGA22AY.7.10.000225
noncoding29717G29717-G-22AY.740.000231
noncoding29717G29717-G-22AY.75.10.000361
noncoding29717G29717-G-22AY.840.000875
noncoding29717G29717-G-22AY.9.20.000073
noncoding29717G29717AGA22AY.98.10.000097
noncoding29717G29717TGT22AY.99.20.000184
noncoding29717G29717TGT22B0.000256
noncoding29717G29717-G-22B.1.1.1940.009901
noncoding29717G29717AGA22B.1.1.2140.000111
noncoding29717G29717AGA22B.1.1.3170.000823
noncoding29717G29717AGA22B.1.1.330.000842
noncoding29717G29717AGA22B.1.1.700.000682
noncoding29717G29717AGA22B.1.2210.000142
noncoding29717G29717-G-22B.1.2400.000431
noncoding29717G29717TGT22B.1.2580.000133
noncoding29717G29717AGA22B.1.36.80.002
noncoding29717G29717-G-22B.1.36.80.002
noncoding29717G29717TGT22B.1.5250.000226
noncoding29717G29717CGC22B.1.5960.000174
noncoding29717G29717AGA22B.1.6370.000146
noncoding29717G29717-G-22B.390.004662
noncoding29717G29717TGT22B.4.70.020202
noncoding29717G29717TGT22B.400.000729
noncoding29717G29717TGT22B.6.60.001778
noncoding29717G29717-G-22C.370.000232
noncoding29717G29717AGA22C.370.000232
noncoding29717G29717CGC22P.10.000032
noncoding29717G29717AGA22P.1.140.000096
noncoding29717G29717-G-22P.1.150.000465
noncoding29717G29717AGA22Q.80.00033
noncoding29717G29717TGT11A0.000387
noncoding29717G29717AGA11A.250.018182
noncoding29717G29717-G-11AD.20.000219
noncoding29717G29717TGT11AE.80.000489
noncoding29717G29717AGA11AT.10.005128
noncoding29717G29717AGA11AY.10.000396
noncoding29717G29717-G-11AY.100.00053
noncoding29717G29717AGA11AY.1060.000335
noncoding29717G29717AGA11AY.1090.00074
noncoding29717G29717AGA11AY.1110.000183
noncoding29717G29717-G-11AY.1110.000183
noncoding29717G29717CGC11AY.1150.005208
noncoding29717G29717-G-11AY.1170.000085
noncoding29717G29717TGT11AY.1180.000063
noncoding29717G29717-G-11AY.1200.000037
noncoding29717G29717AGA11AY.120.2.10.000498
noncoding29717G29717-G-11AY.120.2.10.000498
noncoding29717G29717TGT11AY.1210.000135
noncoding29717G29717AGA11AY.130.000161
noncoding29717G29717-G-11AY.140.000088
noncoding29717G29717AGA11AY.150.002222
noncoding29717G29717TGT11AY.160.00038
noncoding29717G29717AGA11AY.16.10.00047
noncoding29717G29717TGT11AY.190.00114
noncoding29717G29717TGT11AY.200.000039
noncoding29717G29717CGC11AY.230.00007
noncoding29717G29717TGT11AY.240.000431
noncoding29717G29717-G-11AY.260.000028
noncoding29717G29717AGA11AY.270.000065
noncoding29717G29717CGC11AY.29.10.000221
noncoding29717G29717-G-11AY.3.10.000085
noncoding29717G29717AGA11AY.320.000532
noncoding29717G29717AGA11AY.340.000097
noncoding29717G29717-G-11AY.340.000097
noncoding29717G29717TGT11AY.340.000097
noncoding29717G29717TGT11AY.39.10.00004
noncoding29717G29717CGC11AY.40.000002
noncoding29717G29717CGC11AY.4.20.000022
noncoding29717G29717AGA11AY.4.2.10.000149
noncoding29717G29717-G-11AY.400.000964
noncoding29717G29717-G-11AY.420.00004
noncoding29717G29717CGC11AY.430.000004
noncoding29717G29717CGC11AY.440.000006
noncoding29717G29717TGT11AY.450.000122
noncoding29717G29717CGC11AY.460.000104
noncoding29717G29717-G-11AY.460.000104
noncoding29717G29717-G-11AY.46.20.000635
noncoding29717G29717-G-11AY.46.30.000934
noncoding29717G29717TGT11AY.46.40.000165
noncoding29717G29717-G-11AY.46.60.000072
noncoding29717G29717AGA11AY.46.60.000072
noncoding29717G29717-G-11AY.5.40.000277
noncoding29717G29717AGA11AY.5.40.000277
noncoding29717G29717-G-11AY.520.000814
noncoding29717G29717TGT11AY.540.000095
noncoding29717G29717-G-11AY.560.001605
noncoding29717G29717AGA11AY.600.000938
noncoding29717G29717TGT11AY.610.000105
noncoding29717G29717AGA11AY.610.000105
noncoding29717G29717-G-11AY.620.000436
noncoding29717G29717AGA11AY.650.000533
noncoding29717G29717TGT11AY.7.10.000113
noncoding29717G29717AGA11AY.730.000665
noncoding29717G29717TGT11AY.730.000665
noncoding29717G29717TGT11AY.740.000116
noncoding29717G29717AGA11AY.750.000056
noncoding29717G29717AGA11AY.75.10.00018
noncoding29717G29717-G-11AY.810.001992
noncoding29717G29717TGT11AY.840.000437
noncoding29717G29717-G-11AY.870.000833
noncoding29717G29717TGT11AY.880.000884
noncoding29717G29717TGT11AY.9.10.000084
noncoding29717G29717-G-11AY.9.10.000084
noncoding29717G29717TGT11AY.9.20.000037
noncoding29717G29717-G-11AY.910.00073
noncoding29717G29717AGA11AY.920.000287
noncoding29717G29717-G-11AY.940.000443
noncoding29717G29717CGC11AY.960.002075
noncoding29717G29717TGT11AY.98.10.000048
noncoding29717G29717-G-11AY.99.20.000092
noncoding29717G29717-G-11AZ.20.000821
noncoding29717G29717CGC11B.10.000009
noncoding29717G29717AGA11B.1.1.10.000327
noncoding29717G29717AGA11B.1.1.1610.003534
noncoding29717G29717TGT11B.1.1.1740.003378
noncoding29717G29717-G-11B.1.1.1970.037037
noncoding29717G29717-G-11B.1.1.2140.000055
noncoding29717G29717-G-11B.1.1.2180.007692
noncoding29717G29717-G-11B.1.1.2220.000204
noncoding29717G29717TGT11B.1.1.2220.000204
noncoding29717G29717AGA11B.1.1.250.000569
noncoding29717G29717-G-11B.1.1.2770.000759
noncoding29717G29717TGT11B.1.1.280.000311
noncoding29717G29717-G-11B.1.1.3050.003861
noncoding29717G29717AGA11B.1.1.3180.000302
noncoding29717G29717AGA11B.1.1.3220.008772
noncoding29717G29717-G-11B.1.1.330.000421
noncoding29717G29717-G-11B.1.1.3480.000796
noncoding29717G29717TGT11B.1.1.3540.004386
noncoding29717G29717TGT11B.1.1.3720.000689
noncoding29717G29717TGT11B.1.1.3740.002375
noncoding29717G29717AGA11B.1.1.3800.009804
noncoding29717G29717-G-11B.1.1.390.00051
noncoding29717G29717-G-11B.1.1.4090.002833
noncoding29717G29717TGT11B.1.1.4340.000349
noncoding29717G29717TGT11B.1.1.4620.008621
noncoding29717G29717AGA11B.1.1.4660.008696
noncoding29717G29717TGT11B.1.1.890.006061
noncoding29717G29717AGA11B.1.1180.006711
noncoding29717G29717AGA11B.1.160.70.002079
noncoding29717G29717TGT11B.1.177.210.000076
noncoding29717G29717AGA11B.1.177.320.00135
noncoding29717G29717AGA11B.1.177.40.000211
noncoding29717G29717AGA11B.1.177.400.005155
noncoding29717G29717AGA11B.1.177.440.000519
noncoding29717G29717AGA11B.1.177.560.000668
noncoding29717G29717TGT11B.1.177.560.000668
noncoding29717G29717AGA11B.1.177.60.000977
noncoding29717G29717-G-11B.1.177.630.002703
noncoding29717G29717AGA11B.1.177.70.000165
noncoding29717G29717AGA11B.1.177.80.000752
noncoding29717G29717AGA11B.1.177.870.000728
noncoding29717G29717CGC11B.1.177.90.001332
noncoding29717G29717CGC11B.1.20.000009
noncoding29717G29717-G-11B.1.2060.000816
noncoding29717G29717TGT11B.1.2060.000816
noncoding29717G29717AGA11B.1.221.30.000833
noncoding29717G29717-G-11B.1.2220.001692
noncoding29717G29717AGA11B.1.2340.000132
noncoding29717G29717AGA11B.1.2390.001221
noncoding29717G29717AGA11B.1.2400.000216
noncoding29717G29717CGC11B.1.2430.00007
noncoding29717G29717-G-11B.1.2580.000067
noncoding29717G29717AGA11B.1.258.110.000396
noncoding29717G29717-G-11B.1.258.160.001637
noncoding29717G29717AGA11B.1.258.170.000104
noncoding29717G29717TGT11B.1.2600.003344
noncoding29717G29717-G-11B.1.2980.002114
noncoding29717G29717TGT11B.1.351.30.000876
noncoding29717G29717TGT11B.1.36.170.000494
noncoding29717G29717AGA11B.1.36.290.000517
noncoding29717G29717-G-11B.1.36.310.001751
noncoding29717G29717AGA11B.1.4160.001269
noncoding29717G29717TGT11B.1.4160.001269
noncoding29717G29717TGT11B.1.4270.00005
noncoding29717G29717-G-11B.1.438.10.000107
noncoding29717G29717AGA11B.1.438.10.000107
noncoding29717G29717TGT11B.1.438.10.000107
noncoding29717G29717-G-11B.1.4430.004673
noncoding29717G29717AGA11B.1.4530.003236
noncoding29717G29717AGA11B.1.4700.001404
noncoding29717G29717AGA11B.1.5170.000427
noncoding29717G29717-G-11B.1.5170.000427
noncoding29717G29717-G-11B.1.5250.000113
noncoding29717G29717AGA11B.1.5400.009709
noncoding29717G29717TGT11B.1.5610.000397
noncoding29717G29717TGT11B.1.5650.00081
noncoding29717G29717AGA11B.1.5660.019231
noncoding29717G29717AGA11B.1.5760.000907
noncoding29717G29717-G-11B.1.5820.000491
noncoding29717G29717TGT11B.1.5960.000087
noncoding29717G29717AGA11B.1.6160.02439
noncoding29717G29717-G-11B.1.617.30.002985
noncoding29717G29717-G-11B.1.6210.000089
noncoding29717G29717AGA11B.1.6280.000352
noncoding29717G29717-G-11B.1.6370.000073
noncoding29717G29717AGA11B.410.008
noncoding29717G29717-G-11B.60.00091
noncoding29717G29717AGA11B.6.60.000889
noncoding29717G29717AGA11C.36.30.000567
noncoding29717G29717CGC11K.30.006173
noncoding29717G29717TGT11P.1.140.000048
noncoding29717G29717-G-11P.1.140.000048
noncoding29717G29717AGA11P.1.150.000232
noncoding29717G29717-G-11P.1.170.000162
noncoding29717G29717TGT11P.1.70.000319
noncoding29717G29717AGA11P.20.000187
noncoding29717G29717-G-11P.20.000187
noncoding29717G29717AGA11Q.10.000126
noncoding29717G29717TGT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.