CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29717 | G29717A | noncoding | G | A | 2974 | 2974 | 1 | 29717-29717 | |
noncoding | 29717 | G29717- | noncoding | G | - | 1185 | 1185 | 1 | 29717-29717 | |
noncoding | 29717 | G29717T | noncoding | G | T | 641 | 641 | 1 | 29717-29717 | |
noncoding | 29717 | G29717C | noncoding | G | C | 25 | 25 | 1 | 29717-29717 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29717 | G29717A | G | A | 2974 | 2974 | All | 0.000569 |
noncoding | 29717 | G29717- | G | - | 1185 | 1185 | All | 0.000227 |
noncoding | 29717 | G29717- | G | - | 817 | 817 | AY.38 | 0.407888 |
noncoding | 29717 | G29717A | G | A | 731 | 731 | AY.80 | 0.825056 |
noncoding | 29717 | G29717A | G | A | 647 | 647 | B.1.1.7 | 0.000579 |
noncoding | 29717 | G29717T | G | T | 641 | 641 | All | 0.000123 |
noncoding | 29717 | G29717A | G | A | 302 | 302 | B.1.1.198 | 0.443465 |
noncoding | 29717 | G29717A | G | A | 206 | 206 | AY.4 | 0.000321 |
noncoding | 29717 | G29717T | G | T | 148 | 148 | B.1.1.7 | 0.000132 |
noncoding | 29717 | G29717A | G | A | 89 | 89 | B.1.617.2 | 0.000335 |
noncoding | 29717 | G29717T | G | T | 69 | 69 | AY.43 | 0.000306 |
noncoding | 29717 | G29717A | G | A | 61 | 61 | AY.119 | 0.002154 |
noncoding | 29717 | G29717T | G | T | 55 | 55 | AY.4 | 0.000086 |
noncoding | 29717 | G29717A | G | A | 53 | 53 | AY.25 | 0.000319 |
noncoding | 29717 | G29717T | G | T | 51 | 51 | AY.44 | 0.00031 |
noncoding | 29717 | G29717A | G | A | 44 | 44 | AY.103 | 0.000273 |
noncoding | 29717 | G29717A | G | A | 43 | 43 | AY.26 | 0.001217 |
noncoding | 29717 | G29717A | G | A | 43 | 43 | AY.44 | 0.000262 |
noncoding | 29717 | G29717A | G | A | 43 | 43 | B.1.427 | 0.002171 |
noncoding | 29717 | G29717A | G | A | 42 | 42 | AY.29 | 0.000662 |
noncoding | 29717 | G29717A | G | A | 42 | 42 | B.1 | 0.000385 |
noncoding | 29717 | G29717T | G | T | 40 | 40 | B.1.617.2 | 0.000151 |
noncoding | 29717 | G29717A | G | A | 39 | 39 | B.1.177 | 0.000514 |
noncoding | 29717 | G29717A | G | A | 36 | 36 | B.1.1 | 0.000653 |
noncoding | 29717 | G29717- | G | - | 35 | 35 | B.1.1.7 | 0.000031 |
noncoding | 29717 | G29717A | G | A | 31 | 31 | B.1.1.222 | 0.006324 |
noncoding | 29717 | G29717A | G | A | 28 | 28 | AY.9.1 | 0.002344 |
noncoding | 29717 | G29717C | G | C | 25 | 25 | All | 0.000005 |
noncoding | 29717 | G29717A | G | A | 25 | 25 | AY.4.2 | 0.000542 |
noncoding | 29717 | G29717A | G | A | 23 | 23 | B.1.2 | 0.000203 |
noncoding | 29717 | G29717- | G | - | 22 | 22 | B.1.617.2 | 0.000083 |
noncoding | 29717 | G29717A | G | A | 21 | 21 | AY.42 | 0.000845 |
noncoding | 29717 | G29717T | G | T | 21 | 21 | B.1.398 | 0.0625 |
noncoding | 29717 | G29717T | G | T | 19 | 19 | AY.29 | 0.0003 |
noncoding | 29717 | G29717A | G | A | 19 | 19 | AY.43 | 0.000084 |
noncoding | 29717 | G29717A | G | A | 19 | 19 | AY.5 | 0.000392 |
noncoding | 29717 | G29717- | G | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29717 | G29717A | G | A | 19 | 19 | B.1.243 | 0.001322 |
noncoding | 29717 | G29717- | G | - | 17 | 17 | AY.4 | 0.000026 |
noncoding | 29717 | G29717A | G | A | 17 | 17 | AY.9.2 | 0.000624 |
noncoding | 29717 | G29717- | G | - | 16 | 16 | AY.29 | 0.000252 |
noncoding | 29717 | G29717T | G | T | 16 | 16 | P.1 | 0.000252 |
noncoding | 29717 | G29717A | G | A | 15 | 15 | AY.36 | 0.002223 |
noncoding | 29717 | G29717A | G | A | 15 | 15 | AY.4.4 | 0.006137 |
noncoding | 29717 | G29717T | G | T | 15 | 15 | B.1.1.519 | 0.000596 |
noncoding | 29717 | G29717A | G | A | 14 | 14 | AY.102 | 0.000371 |
noncoding | 29717 | G29717T | G | T | 13 | 13 | AY.3 | 0.000129 |
noncoding | 29717 | G29717- | G | - | 11 | 11 | AY.25 | 0.000066 |
noncoding | 29717 | G29717- | G | - | 11 | 11 | AY.3 | 0.000109 |
noncoding | 29717 | G29717A | G | A | 11 | 11 | B.1.351 | 0.000327 |
noncoding | 29717 | G29717- | G | - | 10 | 10 | AY.44 | 0.000061 |
noncoding | 29717 | G29717T | G | T | 10 | 10 | B.1.526 | 0.000235 |
noncoding | 29717 | G29717T | G | T | 9 | 9 | AY.103 | 0.000056 |
noncoding | 29717 | G29717A | G | A | 9 | 9 | AY.39 | 0.000222 |
noncoding | 29717 | G29717- | G | - | 9 | 9 | AY.39 | 0.000222 |
noncoding | 29717 | G29717A | G | A | 9 | 9 | B.1.1.39 | 0.004587 |
noncoding | 29717 | G29717A | G | A | 9 | 9 | B.1.258 | 0.000599 |
noncoding | 29717 | G29717A | G | A | 9 | 9 | B.1.526 | 0.000212 |
noncoding | 29717 | G29717T | G | T | 8 | 8 | A.2.5.2 | 0.012579 |
noncoding | 29717 | G29717A | G | A | 8 | 8 | AY.3 | 0.00008 |
noncoding | 29717 | G29717A | G | A | 8 | 8 | AY.33 | 0.000534 |
noncoding | 29717 | G29717- | G | - | 8 | 8 | B.1 | 0.000073 |
noncoding | 29717 | G29717T | G | T | 8 | 8 | B.1.221 | 0.000568 |
noncoding | 29717 | G29717- | G | - | 8 | 8 | B.1.429 | 0.000188 |
noncoding | 29717 | G29717A | G | A | 8 | 8 | B.1.617.1 | 0.001032 |
noncoding | 29717 | G29717A | G | A | 7 | 7 | AY.20 | 0.000272 |
noncoding | 29717 | G29717T | G | T | 7 | 7 | AY.35 | 0.001631 |
noncoding | 29717 | G29717T | G | T | 7 | 7 | AY.47 | 0.000218 |
noncoding | 29717 | G29717A | G | A | 7 | 7 | B.1.1.28 | 0.002179 |
noncoding | 29717 | G29717- | G | - | 7 | 7 | B.1.1.46 | 0.030568 |
noncoding | 29717 | G29717- | G | - | 7 | 7 | B.1.160.33 | 0.030973 |
noncoding | 29717 | G29717- | G | - | 7 | 7 | B.1.210 | 0.014925 |
noncoding | 29717 | G29717A | G | A | 6 | 6 | AY.100 | 0.000276 |
noncoding | 29717 | G29717T | G | T | 6 | 6 | AY.102 | 0.000159 |
noncoding | 29717 | G29717- | G | - | 6 | 6 | AY.103 | 0.000037 |
noncoding | 29717 | G29717A | G | A | 6 | 6 | AY.118 | 0.000376 |
noncoding | 29717 | G29717T | G | T | 6 | 6 | AY.25 | 0.000036 |
noncoding | 29717 | G29717T | G | T | 6 | 6 | AY.33 | 0.000401 |
noncoding | 29717 | G29717T | G | T | 6 | 6 | AY.42 | 0.000241 |
noncoding | 29717 | G29717- | G | - | 6 | 6 | AY.43 | 0.000027 |
noncoding | 29717 | G29717A | G | A | 6 | 6 | AY.6 | 0.000247 |
noncoding | 29717 | G29717T | G | T | 6 | 6 | B.1 | 0.000055 |
noncoding | 29717 | G29717- | G | - | 6 | 6 | B.1.2 | 0.000053 |
noncoding | 29717 | G29717A | G | A | 6 | 6 | B.1.623 | 0.003219 |
noncoding | 29717 | G29717- | G | - | 5 | 5 | AY.45 | 0.000608 |
noncoding | 29717 | G29717- | G | - | 5 | 5 | AY.47 | 0.000156 |
noncoding | 29717 | G29717- | G | - | 5 | 5 | AY.75 | 0.00028 |
noncoding | 29717 | G29717T | G | T | 5 | 5 | B.1.1 | 0.000091 |
noncoding | 29717 | G29717T | G | T | 5 | 5 | B.1.2 | 0.000044 |
noncoding | 29717 | G29717- | G | - | 5 | 5 | B.1.408 | 0.01845 |
noncoding | 29717 | G29717- | G | - | 5 | 5 | B.1.427 | 0.000252 |
noncoding | 29717 | G29717T | G | T | 5 | 5 | D.2 | 0.000375 |
noncoding | 29717 | G29717A | G | A | 5 | 5 | P.1 | 0.000079 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | AY.117 | 0.000338 |
noncoding | 29717 | G29717T | G | T | 4 | 4 | AY.120 | 0.000149 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | AY.121 | 0.000541 |
noncoding | 29717 | G29717T | G | T | 4 | 4 | AY.26 | 0.000113 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | AY.37 | 0.001264 |
noncoding | 29717 | G29717- | G | - | 4 | 4 | AY.5 | 0.000083 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | AY.54 | 0.000381 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | AY.9 | 0.00027 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | AY.98 | 0.000316 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | AY.99.2 | 0.000369 |
noncoding | 29717 | G29717- | G | - | 4 | 4 | B.1.1 | 0.000073 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | B.1.1.519 | 0.000159 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | B.1.160 | 0.000125 |
noncoding | 29717 | G29717- | G | - | 4 | 4 | B.1.177 | 0.000053 |
noncoding | 29717 | G29717T | G | T | 4 | 4 | B.1.258.17 | 0.000416 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | B.1.420 | 0.041667 |
noncoding | 29717 | G29717A | G | A | 4 | 4 | B.1.596 | 0.000349 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | AY.119 | 0.000106 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | AY.120 | 0.000112 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | AY.23.1 | 0.001252 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | AY.39 | 0.000074 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | AY.4.2 | 0.000065 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | AY.45 | 0.000365 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | AY.54 | 0.000286 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | AY.61 | 0.000314 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | AY.65 | 0.001599 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | AY.69 | 0.00056 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | AY.83 | 0.005172 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | AY.90 | 0.002053 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | B | 0.000383 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | B.1.1.269 | 0.00406 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | B.1.1.486 | 0.004732 |
noncoding | 29717 | G29717C | G | C | 3 | 3 | B.1.1.7 | 0.000003 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | B.1.1.70 | 0.001023 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | B.1.160 | 0.000094 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | B.1.177 | 0.00004 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | B.1.351 | 0.000089 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | B.1.351.2 | 0.000908 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | B.1.36 | 0.000438 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | B.1.369 | 0.000856 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | B.1.429 | 0.000071 |
noncoding | 29717 | G29717T | G | T | 3 | 3 | B.1.429 | 0.000071 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | B.1.44 | 0.025 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | B.1.595 | 0.000783 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | B.1.621 | 0.000266 |
noncoding | 29717 | G29717- | G | - | 3 | 3 | P.1 | 0.000047 |
noncoding | 29717 | G29717A | G | A | 3 | 3 | P.1.17 | 0.000485 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | A | 0.000774 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | A.2.5 | 0.000998 |
noncoding | 29717 | G29717C | G | C | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.102 | 0.000053 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.114 | 0.000462 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.116 | 0.000574 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | AY.119 | 0.000071 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.23 | 0.000139 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.23 | 0.000139 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.29.1 | 0.000441 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.30 | 0.000791 |
noncoding | 29717 | G29717C | G | C | 2 | 2 | AY.39.1 | 0.000079 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.39.1 | 0.000079 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.4.5 | 0.000215 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | AY.46 | 0.000208 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.47 | 0.000062 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.59 | 0.001059 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.64 | 0.00119 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.7 | 0.000392 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.7.1 | 0.000225 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.74 | 0.000231 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.75.1 | 0.000361 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.84 | 0.000875 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | AY.9.2 | 0.000073 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | AY.99.2 | 0.000184 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | B | 0.000256 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | B.1.1.194 | 0.009901 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | B.1.1.317 | 0.000823 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | B.1.1.70 | 0.000682 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | B.1.240 | 0.000431 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 29717 | G29717C | G | C | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | B.1.637 | 0.000146 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | B.39 | 0.004662 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | B.4.7 | 0.020202 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | B.40 | 0.000729 |
noncoding | 29717 | G29717T | G | T | 2 | 2 | B.6.6 | 0.001778 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | C.37 | 0.000232 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | C.37 | 0.000232 |
noncoding | 29717 | G29717C | G | C | 2 | 2 | P.1 | 0.000032 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 29717 | G29717- | G | - | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29717 | G29717A | G | A | 2 | 2 | Q.8 | 0.00033 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | A | 0.000387 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | A.25 | 0.018182 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AE.8 | 0.000489 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AT.1 | 0.005128 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.1 | 0.000396 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.10 | 0.00053 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.109 | 0.00074 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.115 | 0.005208 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.118 | 0.000063 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.121 | 0.000135 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.13 | 0.000161 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.15 | 0.002222 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.16 | 0.00038 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.16.1 | 0.00047 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.19 | 0.00114 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.24 | 0.000431 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.27 | 0.000065 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.32 | 0.000532 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.4 | 0.000002 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.43 | 0.000004 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.46 | 0.000104 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.46 | 0.000104 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.46.2 | 0.000635 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.46.4 | 0.000165 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.52 | 0.000814 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.54 | 0.000095 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.56 | 0.001605 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.60 | 0.000938 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.65 | 0.000533 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.7.1 | 0.000113 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.73 | 0.000665 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.73 | 0.000665 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.74 | 0.000116 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.84 | 0.000437 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.88 | 0.000884 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | AY.92 | 0.000287 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | AY.96 | 0.002075 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | B.1 | 0.000009 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.1.1 | 0.000327 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.1.161 | 0.003534 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.305 | 0.003861 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.1.322 | 0.008772 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.354 | 0.004386 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.374 | 0.002375 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.1.380 | 0.009804 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.434 | 0.000349 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.462 | 0.008621 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.1.466 | 0.008696 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.1.89 | 0.006061 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.118 | 0.006711 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.160.7 | 0.002079 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.32 | 0.00135 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.4 | 0.000211 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.40 | 0.005155 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.44 | 0.000519 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.56 | 0.000668 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.177.56 | 0.000668 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.6 | 0.000977 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.8 | 0.000752 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.177.87 | 0.000728 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | B.1.177.9 | 0.001332 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | B.1.2 | 0.000009 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.206 | 0.000816 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.206 | 0.000816 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.221.3 | 0.000833 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.239 | 0.001221 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.258 | 0.000067 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.258.11 | 0.000396 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.260 | 0.003344 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.351.3 | 0.000876 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.36.17 | 0.000494 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.36.29 | 0.000517 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.453 | 0.003236 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.540 | 0.009709 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.565 | 0.00081 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.566 | 0.019231 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.616 | 0.02439 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.1.628 | 0.000352 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.41 | 0.008 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | B.6.6 | 0.000889 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29717 | G29717C | G | C | 1 | 1 | K.3 | 0.006173 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | P.1.7 | 0.000319 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | P.2 | 0.000187 |
noncoding | 29717 | G29717- | G | - | 1 | 1 | P.2 | 0.000187 |
noncoding | 29717 | G29717A | G | A | 1 | 1 | Q.1 | 0.000126 |
noncoding | 29717 | G29717T | G | T | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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