CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29711 | G29711- | noncoding | G | - | 4661 | 4661 | 1 | 29711-29711 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29711 | G29711- | G | - | 4661 | 4661 | All | 0.000891 |
noncoding | 29711 | G29711- | G | - | 3053 | 3053 | B.1.575 | 0.926274 |
noncoding | 29711 | G29711- | G | - | 323 | 323 | B.1.575.1 | 0.787805 |
noncoding | 29711 | G29711- | G | - | 205 | 205 | B.1.575.2 | 0.985577 |
noncoding | 29711 | G29711- | G | - | 175 | 175 | AY.4 | 0.000272 |
noncoding | 29711 | G29711- | G | - | 78 | 78 | B.1.617.2 | 0.000294 |
noncoding | 29711 | G29711- | G | - | 64 | 64 | B.1 | 0.000586 |
noncoding | 29711 | G29711- | G | - | 62 | 62 | AY.68 | 0.016972 |
noncoding | 29711 | G29711- | G | - | 58 | 58 | AY.103 | 0.00036 |
noncoding | 29711 | G29711- | G | - | 57 | 57 | B.1.526 | 0.00134 |
noncoding | 29711 | G29711- | G | - | 44 | 44 | B.1.1 | 0.000798 |
noncoding | 29711 | G29711- | G | - | 39 | 39 | B.1.637 | 0.00285 |
noncoding | 29711 | G29711- | G | - | 35 | 35 | B.1.1.7 | 0.000031 |
noncoding | 29711 | G29711- | G | - | 29 | 29 | AY.25 | 0.000174 |
noncoding | 29711 | G29711- | G | - | 26 | 26 | AY.43 | 0.000115 |
noncoding | 29711 | G29711- | G | - | 24 | 24 | B.1.427 | 0.001212 |
noncoding | 29711 | G29711- | G | - | 22 | 22 | B.1.595 | 0.005741 |
noncoding | 29711 | G29711- | G | - | 19 | 19 | AY.3 | 0.000189 |
noncoding | 29711 | G29711- | G | - | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29711 | G29711- | G | - | 18 | 18 | AY.44 | 0.00011 |
noncoding | 29711 | G29711- | G | - | 15 | 15 | AY.29 | 0.000237 |
noncoding | 29711 | G29711- | G | - | 15 | 15 | B.1.2 | 0.000132 |
noncoding | 29711 | G29711- | G | - | 13 | 13 | AY.4.4 | 0.005319 |
noncoding | 29711 | G29711- | G | - | 11 | 11 | AY.34 | 0.001067 |
noncoding | 29711 | G29711- | G | - | 10 | 10 | B.1.240 | 0.002156 |
noncoding | 29711 | G29711- | G | - | 10 | 10 | P.1 | 0.000158 |
noncoding | 29711 | G29711- | G | - | 9 | 9 | B.1.429 | 0.000212 |
noncoding | 29711 | G29711- | G | - | 8 | 8 | AY.7 | 0.001568 |
noncoding | 29711 | G29711- | G | - | 7 | 7 | AY.39 | 0.000173 |
noncoding | 29711 | G29711- | G | - | 7 | 7 | AY.46 | 0.000729 |
noncoding | 29711 | G29711- | G | - | 7 | 7 | B.1.1.46 | 0.030568 |
noncoding | 29711 | G29711- | G | - | 7 | 7 | B.1.160.33 | 0.030973 |
noncoding | 29711 | G29711- | G | - | 7 | 7 | B.1.210 | 0.014925 |
noncoding | 29711 | G29711- | G | - | 6 | 6 | AY.102 | 0.000159 |
noncoding | 29711 | G29711- | G | - | 6 | 6 | B.1.1.306 | 0.00263 |
noncoding | 29711 | G29711- | G | - | 6 | 6 | B.1.177 | 0.000079 |
noncoding | 29711 | G29711- | G | - | 5 | 5 | B.1.623 | 0.002682 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | AY.119 | 0.000141 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | AY.20 | 0.000155 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | AY.23 | 0.000279 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | AY.26 | 0.000113 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | AY.45 | 0.000487 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | AY.47 | 0.000124 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | AY.5 | 0.000083 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | B.1.221 | 0.000284 |
noncoding | 29711 | G29711- | G | - | 4 | 4 | B.1.258 | 0.000266 |
noncoding | 29711 | G29711- | G | - | 3 | 3 | AY.100 | 0.000138 |
noncoding | 29711 | G29711- | G | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29711 | G29711- | G | - | 3 | 3 | AY.9.2 | 0.00011 |
noncoding | 29711 | G29711- | G | - | 3 | 3 | AZ.2 | 0.002463 |
noncoding | 29711 | G29711- | G | - | 3 | 3 | B.1.258.17 | 0.000312 |
noncoding | 29711 | G29711- | G | - | 3 | 3 | B.1.517 | 0.001281 |
noncoding | 29711 | G29711- | G | - | 3 | 3 | C.37 | 0.000348 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | A | 0.000774 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.14 | 0.000176 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.30 | 0.000791 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.36 | 0.000296 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.42 | 0.00008 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.5.3 | 0.000675 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.61 | 0.00021 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.71 | 0.00095 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.75 | 0.000112 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.84 | 0.000875 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | AY.9.1 | 0.000167 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B | 0.000256 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.1.194 | 0.009901 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.1.50 | 0.001358 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.1.519 | 0.000079 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.177.73 | 0.001133 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.576 | 0.001813 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 29711 | G29711- | G | - | 2 | 2 | B.39 | 0.004662 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | A.29 | 0.005319 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.116 | 0.000287 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.120 | 0.000037 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.121 | 0.000135 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.32 | 0.000532 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.46.2 | 0.000635 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.46.4 | 0.000165 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.305 | 0.003861 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.389 | 0.006061 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.1.416 | 0.000905 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.222 | 0.001692 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.305 | 0.002151 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.428 | 0.00102 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.530 | 0.007143 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | C.1.2 | 0.004255 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | D.2 | 0.000075 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | N.5 | 0.001767 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29711 | G29711- | G | - | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|