CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29708 | C29708T | noncoding | C | T | 6481 | 6481 | 1 | 29708-29708 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29708 | C29708T | C | T | 6481 | 6481 | All | 0.00124 |
noncoding | 29708 | C29708T | C | T | 1372 | 1372 | B.1.1.7 | 0.001228 |
noncoding | 29708 | C29708T | C | T | 525 | 525 | AY.4 | 0.000817 |
noncoding | 29708 | C29708T | C | T | 412 | 412 | B.1.617.2 | 0.001551 |
noncoding | 29708 | C29708T | C | T | 367 | 367 | AY.25 | 0.002207 |
noncoding | 29708 | C29708T | C | T | 299 | 299 | B.1.2 | 0.002633 |
noncoding | 29708 | C29708T | C | T | 259 | 259 | AY.43 | 0.001147 |
noncoding | 29708 | C29708T | C | T | 222 | 222 | AY.113 | 0.03161 |
noncoding | 29708 | C29708T | C | T | 178 | 178 | B.1 | 0.00163 |
noncoding | 29708 | C29708T | C | T | 145 | 145 | B.1.1.71 | 0.878788 |
noncoding | 29708 | C29708T | C | T | 129 | 129 | B.1.160 | 0.004023 |
noncoding | 29708 | C29708T | C | T | 119 | 119 | P.1 | 0.001875 |
noncoding | 29708 | C29708T | C | T | 117 | 117 | AY.44 | 0.000712 |
noncoding | 29708 | C29708T | C | T | 97 | 97 | B.1.1 | 0.00176 |
noncoding | 29708 | C29708T | C | T | 95 | 95 | AY.107 | 0.044268 |
noncoding | 29708 | C29708T | C | T | 81 | 81 | AY.5 | 0.001673 |
noncoding | 29708 | C29708T | C | T | 71 | 71 | AY.103 | 0.000441 |
noncoding | 29708 | C29708T | C | T | 64 | 64 | B.1.177.60 | 0.01398 |
noncoding | 29708 | C29708T | C | T | 60 | 60 | B.1.243 | 0.004175 |
noncoding | 29708 | C29708T | C | T | 54 | 54 | AY.3 | 0.000537 |
noncoding | 29708 | C29708T | C | T | 44 | 44 | AY.4.2 | 0.000954 |
noncoding | 29708 | C29708T | C | T | 44 | 44 | B.1.221 | 0.003125 |
noncoding | 29708 | C29708T | C | T | 42 | 42 | AY.99.2 | 0.003871 |
noncoding | 29708 | C29708T | C | T | 39 | 39 | B.1.177 | 0.000514 |
noncoding | 29708 | C29708T | C | T | 38 | 38 | B.1.369 | 0.010839 |
noncoding | 29708 | C29708T | C | T | 37 | 37 | AY.102 | 0.000981 |
noncoding | 29708 | C29708T | C | T | 37 | 37 | B.1.429 | 0.000871 |
noncoding | 29708 | C29708T | C | T | 36 | 36 | AY.74 | 0.004163 |
noncoding | 29708 | C29708T | C | T | 36 | 36 | B.1.1.214 | 0.001996 |
noncoding | 29708 | C29708T | C | T | 29 | 29 | AY.48 | 0.013488 |
noncoding | 29708 | C29708T | C | T | 29 | 29 | AY.60 | 0.027205 |
noncoding | 29708 | C29708T | C | T | 29 | 29 | B.1.1.222 | 0.005916 |
noncoding | 29708 | C29708T | C | T | 29 | 29 | B.1.575 | 0.008799 |
noncoding | 29708 | C29708T | C | T | 28 | 28 | B.1.526 | 0.000658 |
noncoding | 29708 | C29708T | C | T | 28 | 28 | P.1.1 | 0.008895 |
noncoding | 29708 | C29708T | C | T | 27 | 27 | AY.120 | 0.001004 |
noncoding | 29708 | C29708T | C | T | 27 | 27 | AY.39 | 0.000667 |
noncoding | 29708 | C29708T | C | T | 27 | 27 | AY.61 | 0.002829 |
noncoding | 29708 | C29708T | C | T | 26 | 26 | B.1.234 | 0.003431 |
noncoding | 29708 | C29708T | C | T | 25 | 25 | B.1.160.16 | 0.023234 |
noncoding | 29708 | C29708T | C | T | 24 | 24 | AY.36 | 0.003557 |
noncoding | 29708 | C29708T | C | T | 23 | 23 | AY.117 | 0.001944 |
noncoding | 29708 | C29708T | C | T | 23 | 23 | B.1.1.409 | 0.065156 |
noncoding | 29708 | C29708T | C | T | 22 | 22 | AY.46.6 | 0.001589 |
noncoding | 29708 | C29708T | C | T | 21 | 21 | AY.46.1 | 0.021561 |
noncoding | 29708 | C29708T | C | T | 21 | 21 | AY.98 | 0.001659 |
noncoding | 29708 | C29708T | C | T | 19 | 19 | AY.92 | 0.005458 |
noncoding | 29708 | C29708T | C | T | 19 | 19 | B.1.177.3 | 0.145038 |
noncoding | 29708 | C29708T | C | T | 19 | 19 | B.1.351 | 0.000565 |
noncoding | 29708 | C29708T | C | T | 18 | 18 | AY.9.2 | 0.000661 |
noncoding | 29708 | C29708T | C | T | 18 | 18 | P.1.14 | 0.00086 |
noncoding | 29708 | C29708T | C | T | 17 | 17 | AY.116.1 | 0.005294 |
noncoding | 29708 | C29708T | C | T | 17 | 17 | B.1.111 | 0.019976 |
noncoding | 29708 | C29708T | C | T | 16 | 16 | B.1.596 | 0.001394 |
noncoding | 29708 | C29708T | C | T | 15 | 15 | B.1.621 | 0.001328 |
noncoding | 29708 | C29708T | C | T | 14 | 14 | AY.100 | 0.000644 |
noncoding | 29708 | C29708T | C | T | 14 | 14 | AY.29 | 0.000221 |
noncoding | 29708 | C29708T | C | T | 14 | 14 | B.1.258 | 0.000932 |
noncoding | 29708 | C29708T | C | T | 14 | 14 | B.1.311 | 0.003844 |
noncoding | 29708 | C29708T | C | T | 13 | 13 | AY.20 | 0.000505 |
noncoding | 29708 | C29708T | C | T | 13 | 13 | AY.62 | 0.005664 |
noncoding | 29708 | C29708T | C | T | 13 | 13 | B.1.1.318 | 0.003923 |
noncoding | 29708 | C29708T | C | T | 13 | 13 | B.1.1.519 | 0.000516 |
noncoding | 29708 | C29708T | C | T | 13 | 13 | B.1.438.1 | 0.001394 |
noncoding | 29708 | C29708T | C | T | 12 | 12 | AY.39.1 | 0.000475 |
noncoding | 29708 | C29708T | C | T | 12 | 12 | AY.45 | 0.00146 |
noncoding | 29708 | C29708T | C | T | 12 | 12 | AY.46.4 | 0.001974 |
noncoding | 29708 | C29708T | C | T | 12 | 12 | AY.47 | 0.000373 |
noncoding | 29708 | C29708T | C | T | 12 | 12 | D.2 | 0.0009 |
noncoding | 29708 | C29708T | C | T | 10 | 10 | AY.23 | 0.000697 |
noncoding | 29708 | C29708T | C | T | 10 | 10 | B.1.1.305 | 0.03861 |
noncoding | 29708 | C29708T | C | T | 10 | 10 | B.1.177.81 | 0.001893 |
noncoding | 29708 | C29708T | C | T | 10 | 10 | B.1.599 | 0.036496 |
noncoding | 29708 | C29708T | C | T | 10 | 10 | Q.3 | 0.00145 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | AY.119 | 0.000318 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | AY.121 | 0.001218 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | AY.14 | 0.000792 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | AY.7.2 | 0.005034 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | B | 0.00115 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | B.1.1.420 | 0.009054 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | B.1.177.35 | 0.00622 |
noncoding | 29708 | C29708T | C | T | 9 | 9 | N.4 | 0.038298 |
noncoding | 29708 | C29708T | C | T | 8 | 8 | AY.86 | 0.006639 |
noncoding | 29708 | C29708T | C | T | 8 | 8 | B.1.1.37 | 0.001543 |
noncoding | 29708 | C29708T | C | T | 8 | 8 | B.1.1.398 | 0.025806 |
noncoding | 29708 | C29708T | C | T | 8 | 8 | B.1.128 | 0.005083 |
noncoding | 29708 | C29708T | C | T | 8 | 8 | B.1.427 | 0.000404 |
noncoding | 29708 | C29708T | C | T | 8 | 8 | B.1.470 | 0.011236 |
noncoding | 29708 | C29708T | C | T | 7 | 7 | AY.33 | 0.000467 |
noncoding | 29708 | C29708T | C | T | 7 | 7 | B.1.240 | 0.001509 |
noncoding | 29708 | C29708T | C | T | 7 | 7 | B.1.336 | 0.017073 |
noncoding | 29708 | C29708T | C | T | 7 | 7 | B.1.36 | 0.001021 |
noncoding | 29708 | C29708T | C | T | 7 | 7 | B.1.595 | 0.001827 |
noncoding | 29708 | C29708T | C | T | 7 | 7 | C.37 | 0.000812 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | AY.34 | 0.000582 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | AY.42 | 0.000241 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | AY.98.1 | 0.000291 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | B.1.1.28 | 0.001867 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | B.1.1.306 | 0.00263 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | B.1.621.1 | 0.003035 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | P.1.15 | 0.001394 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | Q.1 | 0.000758 |
noncoding | 29708 | C29708T | C | T | 6 | 6 | Q.8 | 0.000989 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | AY.26 | 0.000142 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | AY.41 | 0.00147 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | AY.46 | 0.00052 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | AY.6 | 0.000206 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | AY.97 | 0.008503 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | B.1.1.230 | 0.045872 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | B.1.1.317 | 0.002058 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | B.1.177.42 | 0.004472 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | B.1.206 | 0.004078 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | B.1.232 | 0.002687 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | B.1.401 | 0.040984 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | B.1.466.2 | 0.001956 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | C.16 | 0.005302 |
noncoding | 29708 | C29708T | C | T | 5 | 5 | P.2 | 0.000933 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | AY.16.1 | 0.00188 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | AY.30 | 0.001583 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | AY.32 | 0.00213 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | AY.75 | 0.000224 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | AY.80 | 0.004515 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | AY.84 | 0.00175 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | AY.93 | 0.001092 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.1.10 | 0.004459 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.1.210 | 0.022857 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.1.284 | 0.00043 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.139 | 0.002933 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.160.27 | 0.060606 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.177.43 | 0.005908 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.36.29 | 0.002069 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.509 | 0.003463 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | B.1.617.1 | 0.000516 |
noncoding | 29708 | C29708T | C | T | 4 | 4 | R.1 | 0.00036 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.118 | 0.000188 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.24 | 0.001293 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.38 | 0.001498 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.46.3 | 0.002801 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.5.3 | 0.001012 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.59 | 0.001589 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.69 | 0.00056 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.7.1 | 0.000338 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.73 | 0.001996 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.75.1 | 0.000541 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.9.1 | 0.000251 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | AY.99.1 | 0.004658 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.1.189 | 0.004539 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.1.216 | 0.002671 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.236 | 0.00616 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.260 | 0.010033 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.351.5 | 0.001799 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.36.18 | 0.001261 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.36.34 | 0.06383 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.36.8 | 0.003 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.367 | 0.002377 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.499 | 0.003151 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.525 | 0.000339 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.575.1 | 0.007317 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.578 | 0.053571 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.628 | 0.001057 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | B.1.637 | 0.000219 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | C.35 | 0.002322 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | P.1.13 | 0.002695 |
noncoding | 29708 | C29708T | C | T | 3 | 3 | P.1.7 | 0.000958 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | A.2 | 0.001324 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | A.23.1 | 0.001408 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AD.2 | 0.000438 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AE.8 | 0.000978 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.116 | 0.000574 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.27 | 0.000129 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.3.1 | 0.000171 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.4.5 | 0.000215 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.46.5 | 0.000397 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.57 | 0.001312 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | AY.7 | 0.000392 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.1.316 | 0.00185 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.1.337 | 0.007194 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.1.369 | 0.000892 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.1.434 | 0.000697 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.1.525 | 0.010929 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.1.528 | 0.009615 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.1.63 | 0.000772 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.147 | 0.001512 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.177.21 | 0.000153 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.177.6 | 0.001953 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.177.7 | 0.00033 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.177.77 | 0.001452 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.177.86 | 0.000367 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.177.9 | 0.002663 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.258.17 | 0.000208 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.267 | 0.037037 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.279 | 0.001027 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.349 | 0.00143 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.36.31 | 0.003503 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.36.35 | 0.005208 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.389 | 0.002004 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.400 | 0.000858 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.416 | 0.002538 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.564 | 0.000852 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.568 | 0.002222 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.580 | 0.00813 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.582 | 0.000981 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 29708 | C29708T | C | T | 2 | 2 | C.25 | 0.25 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | A | 0.000387 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | A.25 | 0.018182 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | A.5 | 0.001923 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AE.5 | 0.018519 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.1 | 0.000396 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.105 | 0.000643 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.114 | 0.000231 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.12 | 0.000316 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.13 | 0.000161 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.35 | 0.000233 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.4.1 | 0.000737 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.46.2 | 0.000635 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.5.1 | 0.003759 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.5.2 | 0.002463 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.54 | 0.000095 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.55 | 0.000917 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.58 | 0.000907 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.67 | 0.000464 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.71 | 0.000475 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.79 | 0.001211 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.85 | 0.000427 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.9 | 0.000068 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AY.99 | 0.001049 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | AZ.1 | 0.000867 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.1 | 0.000327 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.12 | 0.007463 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.144 | 0.028571 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.194 | 0.00495 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.205 | 0.003717 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.207 | 0.001182 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.220 | 0.001859 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.232 | 0.001815 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.244 | 0.015385 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.25 | 0.000569 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.279 | 0.001121 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.294 | 0.001266 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.298 | 0.000862 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.301 | 0.001179 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.312 | 0.001912 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.354 | 0.004386 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.391 | 0.008547 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.46 | 0.004367 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.119 | 0.010526 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.160.33 | 0.004425 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.177.23 | 0.003236 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.177.4 | 0.000211 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.177.53 | 0.002392 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.177.80 | 0.001912 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.177.82 | 0.000477 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.218 | 0.005155 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.258.12 | 0.007874 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.264.1 | 0.047619 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.265 | 0.001271 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.284 | 0.013158 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.314 | 0.007519 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.324 | 0.001605 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.351.3 | 0.000876 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.380 | 0.006623 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.387 | 0.04 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.409 | 0.000781 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.423 | 0.010204 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.424 | 0.008065 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.426 | 0.001009 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.459 | 0.004082 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.462 | 0.007246 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.468 | 0.005714 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.469 | 0.00361 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.473 | 0.019231 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.501 | 0.007353 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.520 | 0.021739 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.521 | 0.004975 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.556 | 0.007519 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.560 | 0.00463 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.564.1 | 0.001577 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.588 | 0.00091 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.600 | 0.005848 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.618 | 0.004032 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.619.1 | 0.000641 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.625 | 0.002353 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.631 | 0.003367 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.1.8 | 0.001972 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.3 | 0.000831 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | B.40 | 0.000364 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | C.18 | 0.002591 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | D.3 | 0.005917 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | P.1.16 | 0.000374 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | P.1.4 | 0.000977 |
noncoding | 29708 | C29708T | C | T | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|