CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29705

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29705G29705TnoncodingGT62496249129705-29705
noncoding29705G29705-noncodingG-203203129705-29705
noncoding29705G29705CnoncodingGC107107129705-29705
noncoding29705G29705AnoncodingGA4747129705-29705

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29705G29705TGT62496249All0.001195
noncoding29705G29705TGT24882488AY.700.518766
noncoding29705G29705TGT568568AY.40.000884
noncoding29705G29705TGT498498B.1.3750.408197
noncoding29705G29705TGT411411AY.430.001821
noncoding29705G29705TGT295295AY.9.10.024699
noncoding29705G29705TGT250250B.1.1.70.000224
noncoding29705G29705TGT210210B.1.10.00381
noncoding29705G29705-G-203203All0.000039
noncoding29705G29705TGT178178B.1.617.20.00067
noncoding29705G29705CGC107107All0.00002
noncoding29705G29705TGT9696B.10.000879
noncoding29705G29705TGT7777B.1.1170.9625
noncoding29705G29705TGT6767AY.250.000403
noncoding29705G29705TGT6565B.1.1.1651
noncoding29705G29705TGT6464AY.440.00039
noncoding29705G29705TGT6262AY.1030.000385
noncoding29705G29705TGT5757AY.1000.002622
noncoding29705G29705TGT5151AY.200.001982
noncoding29705G29705AGA4747All0.000009
noncoding29705G29705TGT3838B.1.1.5190.001509
noncoding29705G29705TGT3737AY.4.20.000802
noncoding29705G29705TGT3333AY.1020.000875
noncoding29705G29705TGT3232B.1.4220.025995
noncoding29705G29705TGT3030AY.470.000933
noncoding29705G29705TGT3030AY.50.000619
noncoding29705G29705CGC2222AY.1030.000137
noncoding29705G29705TGT2222AY.750.001232
noncoding29705G29705TGT2222B.1.5960.001917
noncoding29705G29705CGC2121AY.410.006173
noncoding29705G29705TGT2020AY.30.000199
noncoding29705G29705TGT1818AY.990.018888
noncoding29705G29705TGT1818B.1.20.000158
noncoding29705G29705TGT1616AY.240.006897
noncoding29705G29705TGT1616AY.60.000658
noncoding29705G29705TGT1515AY.330.001002
noncoding29705G29705TGT1515AY.390.000371
noncoding29705G29705-G-1515B.1.1.70.000013
noncoding29705G29705CGC1414AY.30.000139
noncoding29705G29705TGT1313AY.900.008898
noncoding29705G29705TGT1313B.1.1.2160.011576
noncoding29705G29705-G-1212AY.250.000072
noncoding29705G29705TGT1212AY.260.00034
noncoding29705G29705TGT1212AY.420.000483
noncoding29705G29705CGC1212AY.430.000053
noncoding29705G29705TGT1111A.20.00728
noncoding29705G29705-G-1111AY.40.000017
noncoding29705G29705TGT1010A0.00387
noncoding29705G29705TGT1010AY.1110.001832
noncoding29705G29705TGT1010AY.1210.001353
noncoding29705G29705TGT1010AY.270.000647
noncoding29705G29705TGT1010AY.460.001041
noncoding29705G29705TGT1010AY.75.10.001803
noncoding29705G29705TGT1010B.1.3510.000297
noncoding29705G29705CGC1010B.1.617.20.000038
noncoding29705G29705TGT1010P.10.000158
noncoding29705G29705TGT99AY.1200.000335
noncoding29705G29705-G-99AY.30.00009
noncoding29705G29705TGT99B.1.177.210.000688
noncoding29705G29705TGT99B.1.4690.032491
noncoding29705G29705-G-88AY.440.000049
noncoding29705G29705-G-88B.10.000073
noncoding29705G29705TGT88B.1.2430.000557
noncoding29705G29705-G-88B.1.617.20.00003
noncoding29705G29705TGT88B.1.6370.000585
noncoding29705G29705TGT77A.210.019391
noncoding29705G29705TGT77AY.1090.005178
noncoding29705G29705TGT77AY.1190.000247
noncoding29705G29705TGT77AY.90.000473
noncoding29705G29705TGT77B.1.1.2220.001428
noncoding29705G29705-G-77B.1.1.460.030568
noncoding29705G29705-G-77B.1.20.000062
noncoding29705G29705-G-77B.1.2100.014925
noncoding29705G29705TGT66AY.1160.001721
noncoding29705G29705TGT66AY.360.000889
noncoding29705G29705CGC66AY.40.000009
noncoding29705G29705-G-66AY.430.000027
noncoding29705G29705TGT66AY.9.20.00022
noncoding29705G29705CGC66B.1.1.70.000005
noncoding29705G29705-G-66B.1.160.330.026549
noncoding29705G29705TGT66B.1.2400.001293
noncoding29705G29705TGT66B.1.360.000875
noncoding29705G29705TGT66B.1.4290.000141
noncoding29705G29705AGA55AY.40.000008
noncoding29705G29705TGT55AY.980.000395
noncoding29705G29705TGT55B.1.1600.000156
noncoding29705G29705-G-55B.1.1770.000066
noncoding29705G29705AGA44AY.23.10.001669
noncoding29705G29705-G-44AY.390.000099
noncoding29705G29705TGT44AY.450.000487
noncoding29705G29705TGT44AY.46.40.000658
noncoding29705G29705TGT44AY.46.60.000289
noncoding29705G29705-G-44B.1.10.000073
noncoding29705G29705TGT44B.1.1.2140.000222
noncoding29705G29705TGT44B.1.36.350.010417
noncoding29705G29705-G-44P.10.000063
noncoding29705G29705TGT44P.20.000747
noncoding29705G29705-G-33AY.1030.000019
noncoding29705G29705-G-33AY.1090.002219
noncoding29705G29705AGA33AY.250.000018
noncoding29705G29705-G-33AY.290.000047
noncoding29705G29705TGT33AY.290.000047
noncoding29705G29705TGT33AY.530.000863
noncoding29705G29705TGT33AY.610.000314
noncoding29705G29705TGT33AY.98.10.000145
noncoding29705G29705AGA33B0.000383
noncoding29705G29705-G-33B.1.1.1940.014851
noncoding29705G29705TGT33B.1.1.250.001706
noncoding29705G29705-G-33B.1.1.3060.001315
noncoding29705G29705TGT33B.1.1.3180.000905
noncoding29705G29705TGT33B.1.1770.00004
noncoding29705G29705TGT33B.1.2360.00616
noncoding29705G29705TGT33B.1.258.170.000312
noncoding29705G29705TGT33B.1.36.290.001552
noncoding29705G29705TGT33B.1.4270.000151
noncoding29705G29705AGA33B.550.00885
noncoding29705G29705-G-33C.370.000348
noncoding29705G29705TGT33C.370.000348
noncoding29705G29705TGT33D.20.000225
noncoding29705G29705AGA220.111111
noncoding29705G29705AGA22A0.000774
noncoding29705G29705TGT22A.2.50.000998
noncoding29705G29705TGT22AE.30.064516
noncoding29705G29705AGA22AY.1030.000012
noncoding29705G29705TGT22AY.1060.00067
noncoding29705G29705TGT22AY.1180.000125
noncoding29705G29705TGT22AY.140.000176
noncoding29705G29705TGT22AY.3.10.000171
noncoding29705G29705-G-22AY.3.10.000171
noncoding29705G29705TGT22AY.350.000466
noncoding29705G29705AGA22AY.440.000012
noncoding29705G29705-G-22AY.450.000243
noncoding29705G29705TGT22AY.46.50.000397
noncoding29705G29705-G-22AY.470.000062
noncoding29705G29705TGT22AY.5.40.000553
noncoding29705G29705TGT22AY.540.000191
noncoding29705G29705CGC22AY.590.001059
noncoding29705G29705-G-22AY.610.00021
noncoding29705G29705TGT22AY.690.000373
noncoding29705G29705TGT22AY.7.10.000225
noncoding29705G29705TGT22AY.830.003448
noncoding29705G29705TGT22AY.870.001665
noncoding29705G29705TGT22AY.890.009804
noncoding29705G29705TGT22AZ.10.001735
noncoding29705G29705AGA22B.1.1.280.000622
noncoding29705G29705TGT22B.1.1.280.000622
noncoding29705G29705TGT22B.1.1.3050.007722
noncoding29705G29705TGT22B.1.1.3110.000716
noncoding29705G29705TGT22B.1.1.3160.00185
noncoding29705G29705-G-22B.1.1.330.000842
noncoding29705G29705TGT22B.1.1890.008584
noncoding29705G29705-G-22B.1.2210.000142
noncoding29705G29705TGT22B.1.36.170.000988
noncoding29705G29705-G-22B.1.36.80.002
noncoding29705G29705TGT22B.1.3670.001585
noncoding29705G29705TGT22B.1.4000.000858
noncoding29705G29705-G-22B.1.4290.000047
noncoding29705G29705TGT22B.1.4480.005249
noncoding29705G29705TGT22B.1.5260.000047
noncoding29705G29705TGT22B.1.5610.000794
noncoding29705G29705AGA22B.1.617.20.000008
noncoding29705G29705TGT22B.1.6310.006734
noncoding29705G29705TGT22C.110.021277
noncoding29705G29705-G-11A.10.000282
noncoding29705G29705TGT11A.2.20.001689
noncoding29705G29705TGT11AD.20.000219
noncoding29705G29705-G-11AD.20.000219
noncoding29705G29705TGT11AY.1010.00049
noncoding29705G29705-G-11AY.1020.000027
noncoding29705G29705TGT11AY.1080.001103
noncoding29705G29705-G-11AY.1110.000183
noncoding29705G29705TGT11AY.1130.000142
noncoding29705G29705-G-11AY.1170.000085
noncoding29705G29705-G-11AY.1190.000035
noncoding29705G29705TGT11AY.120.000316
noncoding29705G29705CGC11AY.120.000316
noncoding29705G29705TGT11AY.120.10.000321
noncoding29705G29705-G-11AY.120.2.10.000498
noncoding29705G29705AGA11AY.1210.000135
noncoding29705G29705CGC11AY.1210.000135
noncoding29705G29705-G-11AY.140.000088
noncoding29705G29705AGA11AY.16.10.00047
noncoding29705G29705TGT11AY.16.10.00047
noncoding29705G29705TGT11AY.190.00114
noncoding29705G29705-G-11AY.200.000039
noncoding29705G29705AGA11AY.200.000039
noncoding29705G29705-G-11AY.230.00007
noncoding29705G29705TGT11AY.230.00007
noncoding29705G29705-G-11AY.260.000028
noncoding29705G29705TGT11AY.340.000097
noncoding29705G29705-G-11AY.340.000097
noncoding29705G29705CGC11AY.39.10.00004
noncoding29705G29705TGT11AY.39.10.00004
noncoding29705G29705TGT11AY.4.2.10.000149
noncoding29705G29705TGT11AY.4.50.000107
noncoding29705G29705-G-11AY.400.000964
noncoding29705G29705TGT11AY.410.000294
noncoding29705G29705AGA11AY.430.000004
noncoding29705G29705CGC11AY.440.000006
noncoding29705G29705-G-11AY.46.20.000635
noncoding29705G29705CGC11AY.46.60.000072
noncoding29705G29705-G-11AY.46.60.000072
noncoding29705G29705TGT11AY.480.000465
noncoding29705G29705CGC11AY.50.000021
noncoding29705G29705-G-11AY.50.000021
noncoding29705G29705TGT11AY.510.000909
noncoding29705G29705AGA11AY.540.000095
noncoding29705G29705CGC11AY.60.000041
noncoding29705G29705AGA11AY.620.000436
noncoding29705G29705-G-11AY.620.000436
noncoding29705G29705TGT11AY.710.000475
noncoding29705G29705-G-11AY.750.000056
noncoding29705G29705TGT11AY.770.001127
noncoding29705G29705TGT11AY.840.000437
noncoding29705G29705CGC11AY.840.000437
noncoding29705G29705AGA11AY.9.20.000037
noncoding29705G29705TGT11AY.910.00073
noncoding29705G29705-G-11AY.910.00073
noncoding29705G29705TGT11AY.930.000273
noncoding29705G29705-G-11AY.940.000443
noncoding29705G29705CGC11AY.990.001049
noncoding29705G29705-G-11AZ.20.000821
noncoding29705G29705TGT11B0.000128
noncoding29705G29705AGA11B.10.000009
noncoding29705G29705TGT11B.1.1.10.000327
noncoding29705G29705TGT11B.1.1.1280.007092
noncoding29705G29705CGC11B.1.1.1390.022727
noncoding29705G29705TGT11B.1.1.1700.001247
noncoding29705G29705TGT11B.1.1.1890.001513
noncoding29705G29705-G-11B.1.1.1970.037037
noncoding29705G29705-G-11B.1.1.2180.007692
noncoding29705G29705-G-11B.1.1.2220.000204
noncoding29705G29705TGT11B.1.1.2540.011236
noncoding29705G29705TGT11B.1.1.2770.000759
noncoding29705G29705-G-11B.1.1.2770.000759
noncoding29705G29705TGT11B.1.1.2940.001266
noncoding29705G29705TGT11B.1.1.3040.002809
noncoding29705G29705-G-11B.1.1.3050.003861
noncoding29705G29705TGT11B.1.1.3260.001761
noncoding29705G29705-G-11B.1.1.3480.000796
noncoding29705G29705TGT11B.1.1.3710.010417
noncoding29705G29705TGT11B.1.1.3780.007299
noncoding29705G29705TGT11B.1.1.390.00051
noncoding29705G29705TGT11B.1.1.4090.002833
noncoding29705G29705-G-11B.1.1.4090.002833
noncoding29705G29705TGT11B.1.1.500.000679
noncoding29705G29705AGA11B.1.1600.000031
noncoding29705G29705TGT11B.1.177.320.00135
noncoding29705G29705TGT11B.1.177.540.000606
noncoding29705G29705TGT11B.1.177.60.000977
noncoding29705G29705-G-11B.1.177.630.002703
noncoding29705G29705TGT11B.1.1990.004132
noncoding29705G29705CGC11B.1.20.000009
noncoding29705G29705-G-11B.1.2220.001692
noncoding29705G29705TGT11B.1.2580.000067
noncoding29705G29705-G-11B.1.2580.000067
noncoding29705G29705-G-11B.1.258.160.001637
noncoding29705G29705TGT11B.1.2600.003344
noncoding29705G29705-G-11B.1.2980.002114
noncoding29705G29705TGT11B.1.3250.006897
noncoding29705G29705AGA11B.1.3510.00003
noncoding29705G29705TGT11B.1.351.20.000303
noncoding29705G29705AGA11B.1.351.30.000876
noncoding29705G29705TGT11B.1.36.100.004785
noncoding29705G29705TGT11B.1.36.180.00042
noncoding29705G29705TGT11B.1.36.220.001208
noncoding29705G29705-G-11B.1.36.290.000517
noncoding29705G29705-G-11B.1.36.310.001751
noncoding29705G29705AGA11B.1.36.360.000602
noncoding29705G29705TGT11B.1.36.80.001
noncoding29705G29705TGT11B.1.3690.000285
noncoding29705G29705TGT11B.1.3710.001122
noncoding29705G29705TGT11B.1.4160.001269
noncoding29705G29705-G-11B.1.438.10.000107
noncoding29705G29705-G-11B.1.4430.004673
noncoding29705G29705-G-11B.1.466.20.000391
noncoding29705G29705AGA11B.1.4970.000315
noncoding29705G29705-G-11B.1.5170.000427
noncoding29705G29705TGT11B.1.5210.004975
noncoding29705G29705AGA11B.1.5240.001406
noncoding29705G29705TGT11B.1.5550.022222
noncoding29705G29705TGT11B.1.5670.003333
noncoding29705G29705-G-11B.1.5820.000491
noncoding29705G29705TGT11B.1.5890.007576
noncoding29705G29705TGT11B.1.6090.000479
noncoding29705G29705TGT11B.1.617.10.000129
noncoding29705G29705-G-11B.1.617.30.002985
noncoding29705G29705TGT11B.1.6200.000946
noncoding29705G29705-G-11B.1.6210.000089
noncoding29705G29705TGT11B.1.6280.000352
noncoding29705G29705-G-11B.1.6370.000073
noncoding29705G29705AGA11B.30.000831
noncoding29705G29705AGA11B.3.10.001658
noncoding29705G29705TGT11B.40.002208
noncoding29705G29705-G-11B.60.00091
noncoding29705G29705AGA11C.140.004329
noncoding29705G29705TGT11C.360.000911
noncoding29705G29705TGT11C.37.10.002618
noncoding29705G29705CGC11P.10.000016
noncoding29705G29705-G-11P.1.150.000232
noncoding29705G29705CGC11P.1.150.000232
noncoding29705G29705-G-11P.1.170.000162
noncoding29705G29705TGT11P.1.70.000319
noncoding29705G29705-G-11P.20.000187
noncoding29705G29705CGC11P.20.000187
noncoding29705G29705-G-11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.