CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29700 | A29700G | noncoding | A | G | 168955 | 168955 | 1 | 29700-29700 | |
noncoding | 29700 | A29700- | noncoding | A | - | 222 | 222 | 1 | 29700-29700 | |
noncoding | 29700 | A29700T | noncoding | A | T | 79 | 79 | 1 | 29700-29700 | |
noncoding | 29700 | A29700C | noncoding | A | C | 39 | 39 | 1 | 29700-29700 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29700 | A29700G | A | G | 168955 | 168955 | All | 0.032315 |
noncoding | 29700 | A29700G | A | G | 140886 | 140886 | AY.44 | 0.857539 |
noncoding | 29700 | A29700G | A | G | 11582 | 11582 | B.1.617.2 | 0.043611 |
noncoding | 29700 | A29700G | A | G | 3531 | 3531 | B.1.1.7 | 0.003161 |
noncoding | 29700 | A29700G | A | G | 1767 | 1767 | AY.4 | 0.00275 |
noncoding | 29700 | A29700G | A | G | 1200 | 1200 | AY.102 | 0.031817 |
noncoding | 29700 | A29700G | A | G | 663 | 663 | A | 0.256579 |
noncoding | 29700 | A29700G | A | G | 523 | 523 | AY.29 | 0.00825 |
noncoding | 29700 | A29700G | A | G | 520 | 520 | B.1.351 | 0.015458 |
noncoding | 29700 | A29700G | A | G | 475 | 475 | B.1.2 | 0.004183 |
noncoding | 29700 | A29700G | A | G | 456 | 456 | AY.103 | 0.002831 |
noncoding | 29700 | A29700G | A | G | 451 | 451 | AY.43 | 0.001998 |
noncoding | 29700 | A29700G | A | G | 434 | 434 | A.3 | 0.909853 |
noncoding | 29700 | A29700G | A | G | 390 | 390 | AY.54 | 0.037185 |
noncoding | 29700 | A29700G | A | G | 314 | 314 | AY.3 | 0.003123 |
noncoding | 29700 | A29700G | A | G | 309 | 309 | AY.25 | 0.001859 |
noncoding | 29700 | A29700G | A | G | 254 | 254 | AY.47 | 0.007901 |
noncoding | 29700 | A29700- | A | - | 222 | 222 | All | 0.000042 |
noncoding | 29700 | A29700G | A | G | 213 | 213 | AY.98.1 | 0.010316 |
noncoding | 29700 | A29700G | A | G | 209 | 209 | AY.120.1 | 0.067095 |
noncoding | 29700 | A29700G | A | G | 207 | 207 | AY.39 | 0.005115 |
noncoding | 29700 | A29700G | A | G | 177 | 177 | AY.26 | 0.005011 |
noncoding | 29700 | A29700G | A | G | 161 | 161 | B.1.429 | 0.003788 |
noncoding | 29700 | A29700G | A | G | 156 | 156 | B.1 | 0.001429 |
noncoding | 29700 | A29700G | A | G | 155 | 155 | AY.20 | 0.006024 |
noncoding | 29700 | A29700G | A | G | 154 | 154 | B.1.1 | 0.002794 |
noncoding | 29700 | A29700G | A | G | 138 | 138 | AY.24 | 0.059483 |
noncoding | 29700 | A29700G | A | G | 135 | 135 | AY.75 | 0.007563 |
noncoding | 29700 | A29700G | A | G | 110 | 110 | AY.119 | 0.003884 |
noncoding | 29700 | A29700G | A | G | 102 | 102 | B.1.177 | 0.001343 |
noncoding | 29700 | A29700G | A | G | 96 | 96 | AY.69 | 0.01792 |
noncoding | 29700 | A29700G | A | G | 95 | 95 | AY.5 | 0.001962 |
noncoding | 29700 | A29700G | A | G | 85 | 85 | AY.117 | 0.007184 |
noncoding | 29700 | A29700G | A | G | 85 | 85 | B.1.221 | 0.006038 |
noncoding | 29700 | A29700T | A | T | 79 | 79 | All | 0.000015 |
noncoding | 29700 | A29700G | A | G | 77 | 77 | B.1.351.5 | 0.046163 |
noncoding | 29700 | A29700G | A | G | 77 | 77 | P.1 | 0.001213 |
noncoding | 29700 | A29700G | A | G | 74 | 74 | B.1.258.17 | 0.007694 |
noncoding | 29700 | A29700G | A | G | 68 | 68 | B.1.1.284 | 0.007303 |
noncoding | 29700 | A29700G | A | G | 63 | 63 | AY.74 | 0.007286 |
noncoding | 29700 | A29700G | A | G | 62 | 62 | AY.100 | 0.002852 |
noncoding | 29700 | A29700G | A | G | 57 | 57 | AY.45 | 0.006936 |
noncoding | 29700 | A29700G | A | G | 57 | 57 | AY.7.2 | 0.031879 |
noncoding | 29700 | A29700G | A | G | 54 | 54 | B.1.427 | 0.002727 |
noncoding | 29700 | A29700G | A | G | 53 | 53 | AY.34 | 0.005139 |
noncoding | 29700 | A29700G | A | G | 49 | 49 | AY.68 | 0.013414 |
noncoding | 29700 | A29700G | A | G | 46 | 46 | AY.33 | 0.003072 |
noncoding | 29700 | A29700G | A | G | 42 | 42 | B.1.177.60 | 0.009174 |
noncoding | 29700 | A29700G | A | G | 40 | 40 | AY.61 | 0.004191 |
noncoding | 29700 | A29700G | A | G | 40 | 40 | AY.70 | 0.00834 |
noncoding | 29700 | A29700C | A | C | 39 | 39 | All | 0.000007 |
noncoding | 29700 | A29700G | A | G | 39 | 39 | AY.113 | 0.005553 |
noncoding | 29700 | A29700G | A | G | 39 | 39 | B.1.617.1 | 0.00503 |
noncoding | 29700 | A29700G | A | G | 39 | 39 | B.1.621 | 0.003452 |
noncoding | 29700 | A29700G | A | G | 38 | 38 | AY.9.1 | 0.003182 |
noncoding | 29700 | A29700G | A | G | 38 | 38 | B.1.160.14 | 0.080508 |
noncoding | 29700 | A29700G | A | G | 37 | 37 | AY.46 | 0.003851 |
noncoding | 29700 | A29700G | A | G | 37 | 37 | B.1.1.255 | 0.112121 |
noncoding | 29700 | A29700G | A | G | 36 | 36 | B.1.258 | 0.002396 |
noncoding | 29700 | A29700G | A | G | 35 | 35 | B.1.243 | 0.002435 |
noncoding | 29700 | A29700G | A | G | 33 | 33 | B.1.1.403 | 0.846154 |
noncoding | 29700 | A29700G | A | G | 33 | 33 | B.1.623 | 0.017704 |
noncoding | 29700 | A29700G | A | G | 32 | 32 | B.1.369 | 0.009127 |
noncoding | 29700 | A29700G | A | G | 32 | 32 | C.37 | 0.003714 |
noncoding | 29700 | A29700G | A | G | 31 | 31 | AY.120 | 0.001153 |
noncoding | 29700 | A29700G | A | G | 31 | 31 | AY.3.1 | 0.002643 |
noncoding | 29700 | A29700G | A | G | 31 | 31 | AY.4.2 | 0.000672 |
noncoding | 29700 | A29700G | A | G | 30 | 30 | AY.23 | 0.002092 |
noncoding | 29700 | A29700G | A | G | 30 | 30 | B.1.1.519 | 0.001191 |
noncoding | 29700 | A29700G | A | G | 29 | 29 | AY.32 | 0.015442 |
noncoding | 29700 | A29700G | A | G | 29 | 29 | AY.9.2 | 0.001065 |
noncoding | 29700 | A29700G | A | G | 29 | 29 | B.1.1.358 | 1 |
noncoding | 29700 | A29700G | A | G | 29 | 29 | B.1.1.450 | 1 |
noncoding | 29700 | A29700G | A | G | 29 | 29 | B.1.160 | 0.000904 |
noncoding | 29700 | A29700G | A | G | 28 | 28 | B.1.177.43 | 0.041359 |
noncoding | 29700 | A29700G | A | G | 27 | 27 | AY.92 | 0.007756 |
noncoding | 29700 | A29700G | A | G | 27 | 27 | P.1.14 | 0.001291 |
noncoding | 29700 | A29700T | A | T | 26 | 26 | AY.4 | 0.00004 |
noncoding | 29700 | A29700G | A | G | 26 | 26 | AY.42 | 0.001046 |
noncoding | 29700 | A29700G | A | G | 26 | 26 | B.1.371 | 0.029181 |
noncoding | 29700 | A29700G | A | G | 25 | 25 | AY.27 | 0.001618 |
noncoding | 29700 | A29700G | A | G | 24 | 24 | AY.14 | 0.002112 |
noncoding | 29700 | A29700- | A | - | 24 | 24 | AY.44 | 0.000146 |
noncoding | 29700 | A29700G | A | G | 22 | 22 | B.1.526 | 0.000517 |
noncoding | 29700 | A29700G | A | G | 21 | 21 | AY.110 | 0.002366 |
noncoding | 29700 | A29700G | A | G | 21 | 21 | AY.111 | 0.003846 |
noncoding | 29700 | A29700G | A | G | 21 | 21 | AY.35 | 0.004894 |
noncoding | 29700 | A29700G | A | G | 21 | 21 | AY.6 | 0.000864 |
noncoding | 29700 | A29700G | A | G | 19 | 19 | AY.116 | 0.005449 |
noncoding | 29700 | A29700G | A | G | 19 | 19 | AY.36 | 0.002816 |
noncoding | 29700 | A29700T | A | T | 19 | 19 | AY.44 | 0.000116 |
noncoding | 29700 | A29700G | A | G | 19 | 19 | AY.93 | 0.005188 |
noncoding | 29700 | A29700G | A | G | 18 | 18 | AY.118 | 0.001128 |
noncoding | 29700 | A29700G | A | G | 18 | 18 | AY.121 | 0.002436 |
noncoding | 29700 | A29700G | A | G | 18 | 18 | B.1.596 | 0.001568 |
noncoding | 29700 | A29700G | A | G | 17 | 17 | AY.16.1 | 0.007989 |
noncoding | 29700 | A29700G | A | G | 17 | 17 | AY.75.1 | 0.003065 |
noncoding | 29700 | A29700- | A | - | 17 | 17 | B.1.1.7 | 0.000015 |
noncoding | 29700 | A29700G | A | G | 17 | 17 | P.2 | 0.003173 |
noncoding | 29700 | A29700G | A | G | 17 | 17 | R.1 | 0.00153 |
noncoding | 29700 | A29700G | A | G | 16 | 16 | B.1.240 | 0.003449 |
noncoding | 29700 | A29700G | A | G | 15 | 15 | AY.53 | 0.004313 |
noncoding | 29700 | A29700G | A | G | 15 | 15 | B.1.36.18 | 0.006303 |
noncoding | 29700 | A29700G | A | G | 15 | 15 | B.1.595 | 0.003914 |
noncoding | 29700 | A29700G | A | G | 14 | 14 | AZ.1 | 0.012142 |
noncoding | 29700 | A29700C | A | C | 14 | 14 | B.1.1.7 | 0.000013 |
noncoding | 29700 | A29700G | A | G | 13 | 13 | AY.13 | 0.002093 |
noncoding | 29700 | A29700G | A | G | 13 | 13 | Q.8 | 0.002144 |
noncoding | 29700 | A29700G | A | G | 12 | 12 | AY.62 | 0.005229 |
noncoding | 29700 | A29700G | A | G | 12 | 12 | AY.98 | 0.000948 |
noncoding | 29700 | A29700G | A | G | 12 | 12 | B | 0.001534 |
noncoding | 29700 | A29700G | A | G | 12 | 12 | B.1.127 | 0.026374 |
noncoding | 29700 | A29700- | A | - | 11 | 11 | AY.25 | 0.000066 |
noncoding | 29700 | A29700G | A | G | 11 | 11 | AY.34.1 | 0.005609 |
noncoding | 29700 | A29700G | A | G | 11 | 11 | AY.9 | 0.000744 |
noncoding | 29700 | A29700G | A | G | 11 | 11 | B.1.1.1 | 0.003594 |
noncoding | 29700 | A29700G | A | G | 11 | 11 | B.1.1.63 | 0.004244 |
noncoding | 29700 | A29700- | A | - | 11 | 11 | B.1.617.2 | 0.000041 |
noncoding | 29700 | A29700G | A | G | 10 | 10 | AY.114 | 0.002311 |
noncoding | 29700 | A29700- | A | - | 10 | 10 | AY.3 | 0.000099 |
noncoding | 29700 | A29700G | A | G | 10 | 10 | AY.46.2 | 0.006353 |
noncoding | 29700 | A29700G | A | G | 10 | 10 | AY.72 | 0.013605 |
noncoding | 29700 | A29700G | A | G | 10 | 10 | B.1.177.7 | 0.001649 |
noncoding | 29700 | A29700G | A | G | 10 | 10 | Q.4 | 0.004548 |
noncoding | 29700 | A29700G | A | G | 9 | 9 | AT.1 | 0.046154 |
noncoding | 29700 | A29700- | A | - | 9 | 9 | AY.4 | 0.000014 |
noncoding | 29700 | A29700G | A | G | 9 | 9 | AY.46.4 | 0.001481 |
noncoding | 29700 | A29700G | A | G | 9 | 9 | AY.59 | 0.004767 |
noncoding | 29700 | A29700G | A | G | 9 | 9 | B.1.1.28 | 0.002801 |
noncoding | 29700 | A29700G | A | G | 9 | 9 | B.1.409 | 0.007031 |
noncoding | 29700 | A29700G | A | G | 8 | 8 | AY.29.1 | 0.001764 |
noncoding | 29700 | A29700G | A | G | 8 | 8 | AY.46.6 | 0.000578 |
noncoding | 29700 | A29700G | A | G | 8 | 8 | AY.67 | 0.003714 |
noncoding | 29700 | A29700G | A | G | 8 | 8 | AY.79 | 0.009685 |
noncoding | 29700 | A29700G | A | G | 8 | 8 | AY.84 | 0.0035 |
noncoding | 29700 | A29700- | A | - | 8 | 8 | B.1 | 0.000073 |
noncoding | 29700 | A29700G | A | G | 8 | 8 | B.1.1.222 | 0.001632 |
noncoding | 29700 | A29700C | A | C | 7 | 7 | AY.30 | 0.00277 |
noncoding | 29700 | A29700- | A | - | 7 | 7 | AY.43 | 0.000031 |
noncoding | 29700 | A29700G | A | G | 7 | 7 | AY.65 | 0.003731 |
noncoding | 29700 | A29700G | A | G | 7 | 7 | AY.71 | 0.003325 |
noncoding | 29700 | A29700G | A | G | 7 | 7 | AY.91 | 0.005113 |
noncoding | 29700 | A29700G | A | G | 7 | 7 | B.1.1.214 | 0.000388 |
noncoding | 29700 | A29700- | A | - | 7 | 7 | B.1.1.46 | 0.030568 |
noncoding | 29700 | A29700- | A | - | 7 | 7 | B.1.210 | 0.014925 |
noncoding | 29700 | A29700G | A | G | 7 | 7 | B.1.637 | 0.000512 |
noncoding | 29700 | A29700G | A | G | 7 | 7 | C.36.1 | 0.029046 |
noncoding | 29700 | A29700G | A | G | 6 | 6 | AY.108 | 0.006615 |
noncoding | 29700 | A29700G | A | G | 6 | 6 | AY.46.5 | 0.00119 |
noncoding | 29700 | A29700G | A | G | 6 | 6 | B.1.1.170 | 0.007481 |
noncoding | 29700 | A29700G | A | G | 6 | 6 | B.1.1.458 | 0.25 |
noncoding | 29700 | A29700- | A | - | 6 | 6 | B.1.160.33 | 0.026549 |
noncoding | 29700 | A29700G | A | G | 6 | 6 | B.1.177.81 | 0.001136 |
noncoding | 29700 | A29700G | A | G | 6 | 6 | B.1.177.83 | 0.008889 |
noncoding | 29700 | A29700- | A | - | 6 | 6 | B.1.2 | 0.000053 |
noncoding | 29700 | A29700T | A | T | 6 | 6 | B.1.526 | 0.000141 |
noncoding | 29700 | A29700G | A | G | 6 | 6 | N.5 | 0.010601 |
noncoding | 29700 | A29700- | A | - | 6 | 6 | P.1 | 0.000095 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | AY.106 | 0.001674 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | AY.39.1 | 0.000198 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | AY.48 | 0.002326 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | AY.5.3 | 0.001687 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | AY.64 | 0.002976 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | AY.77 | 0.005637 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | AY.95 | 0.003805 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | B.1.1.196 | 0.028571 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | B.1.1.229 | 0.028736 |
noncoding | 29700 | A29700- | A | - | 5 | 5 | B.1.177 | 0.000066 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | B.1.177.57 | 0.001405 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | B.1.36.29 | 0.002587 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | B.1.36.8 | 0.005 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | B.1.609 | 0.002397 |
noncoding | 29700 | A29700T | A | T | 5 | 5 | B.1.617.2 | 0.000019 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | D.2 | 0.000375 |
noncoding | 29700 | A29700G | A | G | 5 | 5 | P.1.12 | 0.00242 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | A.1 | 0.001127 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | A.2.5 | 0.001996 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.107 | 0.001864 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.116.1 | 0.001246 |
noncoding | 29700 | A29700- | A | - | 4 | 4 | AY.39 | 0.000099 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.4.2.1 | 0.000596 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.4.5 | 0.00043 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.60 | 0.003752 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.7.1 | 0.000451 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.8 | 0.002424 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.85 | 0.001709 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.96 | 0.008299 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | AY.99.2 | 0.000369 |
noncoding | 29700 | A29700- | A | - | 4 | 4 | B.1.1 | 0.000073 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | B.1.1.263 | 0.006231 |
noncoding | 29700 | A29700- | A | - | 4 | 4 | B.1.1.306 | 0.001754 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | B.1.111 | 0.0047 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | B.1.588 | 0.00364 |
noncoding | 29700 | A29700G | A | G | 4 | 4 | P.1.17 | 0.000647 |
noncoding | 29700 | A29700- | A | - | 3 | 3 | AY.103 | 0.000019 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | AY.105 | 0.001929 |
noncoding | 29700 | A29700- | A | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | AY.12 | 0.000948 |
noncoding | 29700 | A29700- | A | - | 3 | 3 | AY.29 | 0.000047 |
noncoding | 29700 | A29700- | A | - | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | AY.37 | 0.000948 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | AY.40 | 0.002893 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | AY.5.4 | 0.00083 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | AY.52 | 0.002443 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | AY.56 | 0.004815 |
noncoding | 29700 | A29700T | A | T | 3 | 3 | B.1 | 0.000027 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.1.176 | 0.001318 |
noncoding | 29700 | A29700- | A | - | 3 | 3 | B.1.1.194 | 0.014851 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.1.220 | 0.005576 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.1.25 | 0.001706 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.1.70 | 0.001023 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.177.4 | 0.000633 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.177.5 | 0.003727 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.177.73 | 0.001699 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.234 | 0.000396 |
noncoding | 29700 | A29700T | A | T | 3 | 3 | B.1.351 | 0.000089 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.36 | 0.000438 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.367 | 0.002377 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.497 | 0.000944 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.499 | 0.003151 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | B.1.582 | 0.001472 |
noncoding | 29700 | A29700- | A | - | 3 | 3 | C.37 | 0.000348 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | P.1.10 | 0.000808 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | P.1.7 | 0.000958 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | Q.1 | 0.000379 |
noncoding | 29700 | A29700G | A | G | 3 | 3 | Q.2 | 0.00184 |
noncoding | 29700 | A29700C | A | C | 2 | 2 | 0.111111 | |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AE.8 | 0.000978 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.10 | 0.00106 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.101 | 0.000981 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.109 | 0.001479 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.15 | 0.004444 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.2 | 0.000712 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.30 | 0.000791 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.38 | 0.000999 |
noncoding | 29700 | A29700- | A | - | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29700 | A29700- | A | - | 2 | 2 | AY.47 | 0.000062 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.5.1 | 0.007519 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.57 | 0.001312 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.66 | 0.002139 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.7 | 0.000392 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.86 | 0.00166 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | AY.99 | 0.002099 |
noncoding | 29700 | A29700T | A | T | 2 | 2 | B.1.1 | 0.000036 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.1.288 | 0.003831 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.1.318 | 0.000604 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29700 | A29700- | A | - | 2 | 2 | B.1.1.33 | 0.000842 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.1.448 | 0.004065 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.1.525 | 0.010929 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.1.526 | 0.007092 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.128 | 0.001271 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.149 | 0.006849 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.160.26 | 0.004843 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.177.44 | 0.001038 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.177.82 | 0.000955 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.206 | 0.001631 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.214.2 | 0.001199 |
noncoding | 29700 | A29700- | A | - | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.333 | 0.021053 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.36.1 | 0.002281 |
noncoding | 29700 | A29700- | A | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.375 | 0.001639 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.380 | 0.013245 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.396 | 0.001411 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.400 | 0.000858 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.420 | 0.020833 |
noncoding | 29700 | A29700- | A | - | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.446 | 0.04 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.466.2 | 0.000782 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.564 | 0.000852 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.574 | 0.004301 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.575 | 0.000607 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.580 | 0.00813 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.1.612 | 0.005305 |
noncoding | 29700 | A29700C | A | C | 2 | 2 | B.1.617.2 | 0.000008 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | B.4.1 | 0.037736 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | C.35 | 0.001548 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | C.36 | 0.001821 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | P.1.6 | 0.003891 |
noncoding | 29700 | A29700G | A | G | 2 | 2 | U.3 | 0.007722 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | A.1 | 0.000282 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | A.27 | 0.001656 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AP.1 | 0.001502 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.1 | 0.000396 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.103 | 0.000006 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.103 | 0.000006 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.11 | 0.001339 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.119 | 0.000035 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.120.2 | 0.001285 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.19 | 0.00114 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.25 | 0.000006 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.3 | 0.00001 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.31 | 0.018519 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.36 | 0.000148 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.4.3 | 0.000842 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.46.1 | 0.001027 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.46.2 | 0.000635 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.46.3 | 0.000934 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.5 | 0.000021 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.6 | 0.000041 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.63 | 0.000387 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.69 | 0.000187 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.69 | 0.000187 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | AY.7.1 | 0.000113 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.81 | 0.001992 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.83 | 0.001724 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.84 | 0.000437 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.88 | 0.000884 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.89 | 0.004902 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.9.2.1 | 0.001976 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AY.96 | 0.002075 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | AY.99 | 0.001049 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | AY.99.1 | 0.001553 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B | 0.000128 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.10 | 0.001115 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.112 | 0.058824 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.135 | 0.004695 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.159 | 0.004673 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.161 | 0.003534 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.192 | 0.002309 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.231 | 0.003096 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.237 | 0.005405 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | B.1.1.27 | 0.00565 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.291 | 0.000742 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.294 | 0.001266 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.304 | 0.002809 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.305 | 0.003861 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.309 | 0.005848 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.322 | 0.008772 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.40 | 0.034483 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.406 | 0.006494 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | B.1.1.416 | 0.000905 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.487 | 0.005587 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.1.50 | 0.000679 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | B.1.1.7 | 0.000001 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.126 | 0.001276 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.139 | 0.000733 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.160.28 | 0.002924 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.160.30 | 0.002976 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.164 | 0.014925 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.177.19 | 0.001431 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.177.54 | 0.000606 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.177.56 | 0.000668 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.177.77 | 0.000726 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.192 | 0.009259 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | B.1.2 | 0.000009 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.258 | 0.000067 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.258.11 | 0.000396 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.258.7 | 0.001912 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.260 | 0.003344 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.265 | 0.001271 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.279 | 0.000514 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | B.1.279 | 0.000514 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.3 | 0.002618 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.323 | 0.020833 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.350 | 0.002933 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.36.22 | 0.001208 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.36.26 | 0.002857 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.36.36 | 0.000602 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.36.37 | 0.002778 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.39 | 0.003906 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.391 | 0.001127 |
noncoding | 29700 | A29700C | A | C | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.450 | 0.011364 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.456 | 0.003268 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.466.1 | 0.007194 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.538 | 0.008065 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.546 | 0.003704 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.560 | 0.00463 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 29700 | A29700T | A | T | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.596.1 | 0.009346 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.604 | 0.017241 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.621.1 | 0.000506 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.631 | 0.003367 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.1.632 | 0.006711 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.3.1 | 0.001658 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.40 | 0.000364 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | B.46 | 0.020833 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | C.18 | 0.002591 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | C.6 | 0.037037 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | N.4 | 0.004255 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | N.9 | 0.005952 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29700 | A29700- | A | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | P.1.4 | 0.000977 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | P.3 | 0.001595 |
noncoding | 29700 | A29700G | A | G | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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