CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29694 | A29694- | noncoding | A | - | 400 | 400 | 1 | 29694-29694 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29694 | A29694- | A | - | 400 | 400 | All | 0.000077 |
noncoding | 29694 | A29694- | A | - | 44 | 44 | B.1.1.7 | 0.000039 |
noncoding | 29694 | A29694- | A | - | 41 | 41 | AY.103 | 0.000255 |
noncoding | 29694 | A29694- | A | - | 40 | 40 | AY.25 | 0.000241 |
noncoding | 29694 | A29694- | A | - | 20 | 20 | AY.44 | 0.000122 |
noncoding | 29694 | A29694- | A | - | 15 | 15 | AY.4 | 0.000023 |
noncoding | 29694 | A29694- | A | - | 13 | 13 | AY.3 | 0.000129 |
noncoding | 29694 | A29694- | A | - | 13 | 13 | AY.47 | 0.000404 |
noncoding | 29694 | A29694- | A | - | 10 | 10 | AY.75 | 0.00056 |
noncoding | 29694 | A29694- | A | - | 10 | 10 | B.1.617.2 | 0.000038 |
noncoding | 29694 | A29694- | A | - | 9 | 9 | AY.43 | 0.00004 |
noncoding | 29694 | A29694- | A | - | 9 | 9 | B.1.177 | 0.000119 |
noncoding | 29694 | A29694- | A | - | 8 | 8 | B.1.621 | 0.000708 |
noncoding | 29694 | A29694- | A | - | 7 | 7 | B.1 | 0.000064 |
noncoding | 29694 | A29694- | A | - | 7 | 7 | B.1.1.46 | 0.030568 |
noncoding | 29694 | A29694- | A | - | 7 | 7 | B.1.210 | 0.014925 |
noncoding | 29694 | A29694- | A | - | 6 | 6 | B.1.2 | 0.000053 |
noncoding | 29694 | A29694- | A | - | 6 | 6 | B.1.621.1 | 0.003035 |
noncoding | 29694 | A29694- | A | - | 6 | 6 | P.1 | 0.000095 |
noncoding | 29694 | A29694- | A | - | 5 | 5 | AY.39 | 0.000124 |
noncoding | 29694 | A29694- | A | - | 4 | 4 | AY.119 | 0.000141 |
noncoding | 29694 | A29694- | A | - | 4 | 4 | AY.20 | 0.000155 |
noncoding | 29694 | A29694- | A | - | 4 | 4 | AY.48 | 0.00186 |
noncoding | 29694 | A29694- | A | - | 4 | 4 | B.1.1 | 0.000073 |
noncoding | 29694 | A29694- | A | - | 4 | 4 | B.1.1.194 | 0.019802 |
noncoding | 29694 | A29694- | A | - | 4 | 4 | B.1.258 | 0.000266 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.109 | 0.002219 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.110 | 0.000338 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.118 | 0.000188 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.13 | 0.000483 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.26 | 0.000085 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.29 | 0.000047 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.37 | 0.000948 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | AY.5 | 0.000062 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | B.1.160.33 | 0.013274 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | B.1.351 | 0.000089 |
noncoding | 29694 | A29694- | A | - | 3 | 3 | C.37 | 0.000348 |
noncoding | 29694 | A29694- | A | - | 2 | 2 | AY.102 | 0.000053 |
noncoding | 29694 | A29694- | A | - | 2 | 2 | AY.14 | 0.000176 |
noncoding | 29694 | A29694- | A | - | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29694 | A29694- | A | - | 2 | 2 | AY.46.6 | 0.000144 |
noncoding | 29694 | A29694- | A | - | 2 | 2 | AY.77 | 0.002255 |
noncoding | 29694 | A29694- | A | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29694 | A29694- | A | - | 2 | 2 | B.1.617.3 | 0.00597 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.111 | 0.000183 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.35 | 0.000233 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.54 | 0.000095 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.73 | 0.000665 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.305 | 0.003861 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.177.23 | 0.003236 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.526 | 0.000024 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.58 | 0.010204 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | D.2 | 0.000075 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | P.1.10 | 0.000269 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29694 | A29694- | A | - | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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