CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29692 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29692G29692TnoncodingGT1672116721129692-29692

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29692G29692TGT1672116721All0.003198
noncoding29692G29692TGT92069206B.1.1.2840.988723
noncoding29692G29692TGT18251825B.1.1.1760.801845
noncoding29692G29692TGT763763B.1.617.20.002873
noncoding29692G29692TGT706706AY.40.001099
noncoding29692G29692TGT609609B.1.1.70.000545
noncoding29692G29692TGT267267B.1.4270.013483
noncoding29692G29692TGT221221AY.430.000979
noncoding29692G29692TGT206206B.1.6280.072586
noncoding29692G29692TGT198198B.1.10.003592
noncoding29692G29692TGT190190B.1.4710.519126
noncoding29692G29692TGT169169D.20.012682
noncoding29692G29692TGT144144AY.1030.000894
noncoding29692G29692TGT127127B.10.001163
noncoding29692G29692TGT124124AY.440.000755
noncoding29692G29692TGT9797AY.9.10.008121
noncoding29692G29692TGT8585AY.610.008906
noncoding29692G29692TGT7878B.1.20.000687
noncoding29692G29692TGT6565AY.50.001342
noncoding29692G29692TGT6060AY.390.001483
noncoding29692G29692TGT5555AY.1200.002045
noncoding29692G29692TGT5555AY.60.002262
noncoding29692G29692TGT4848B.1.1.4040.761905
noncoding29692G29692TGT4747B.1.1.700.01603
noncoding29692G29692TGT4747B.1.3990.090909
noncoding29692G29692TGT4343AY.250.000259
noncoding29692G29692TGT4242AY.1020.001114
noncoding29692G29692TGT4242B.1.1.5190.001668
noncoding29692G29692TGT4040AY.360.005929
noncoding29692G29692TGT4040B.1.177.810.007573
noncoding29692G29692TGT3838B.1.1.3940.926829
noncoding29692G29692TGT3737B.1.1770.000487
noncoding29692G29692TGT3737P.1.140.001769
noncoding29692G29692TGT3434B.1.2430.002366
noncoding29692G29692TGT3333B.1.1.3180.009958
noncoding29692G29692TGT3333C.350.025542
noncoding29692G29692TGT3030B.1.1.1600.714286
noncoding29692G29692TGT2626B.1.1.2220.005304
noncoding29692G29692TGT2525AY.290.000394
noncoding29692G29692TGT2323B.1.2320.012359
noncoding29692G29692TGT2222AY.30.000219
noncoding29692G29692TGT2222P.10.000347
noncoding29692G29692TGT2121AY.200.000816
noncoding29692G29692TGT2121AY.75.10.003787
noncoding29692G29692TGT1919AY.450.002312
noncoding29692G29692TGT1919AY.46.60.001372
noncoding29692G29692TGT1818B.1.4020.176471
noncoding29692G29692TGT1717AY.750.000952
noncoding29692G29692TGT1717B.1.1.5210.090909
noncoding29692G29692TGT1616AY.260.000453
noncoding29692G29692TGT1515B.1.2580.000998
noncoding29692G29692TGT1414B.1.2210.000994
noncoding29692G29692TGT1414B.1.3510.000416
noncoding29692G29692TGT1212AY.840.005249
noncoding29692G29692TGT1111B0.001406
noncoding29692G29692TGT1111B.1.360.001605
noncoding29692G29692TGT1111B.1.4800.027363
noncoding29692G29692TGT1111B.1.5260.000259
noncoding29692G29692TGT1010AY.330.000668
noncoding29692G29692TGT1010AY.9.20.000367
noncoding29692G29692TGT1010B.1.1.5120.285714
noncoding29692G29692TGT88AY.1210.001083
noncoding29692G29692TGT88AY.39.10.000317
noncoding29692G29692TGT88AY.600.007505
noncoding29692G29692TGT88AY.90.000541
noncoding29692G29692TGT88B.1.1.1350.037559
noncoding29692G29692TGT88B.1.1.1530.008762
noncoding29692G29692TGT88B.1.1.2210.080808
noncoding29692G29692TGT88B.1.1.2740.040404
noncoding29692G29692TGT88B.1.3850.085106
noncoding29692G29692TGT88B.1.4290.000188
noncoding29692G29692TGT88B.1.5960.000697
noncoding29692G29692TGT77B.1.2340.000924
noncoding29692G29692TGT77P.1.150.001626
noncoding29692G29692TGT66AY.1170.000507
noncoding29692G29692TGT66AY.1190.000212
noncoding29692G29692TGT66AY.270.000388
noncoding29692G29692TGT66AY.4.20.00013
noncoding29692G29692TGT66AY.420.000241
noncoding29692G29692TGT66AY.470.000187
noncoding29692G29692TGT66AY.710.00285
noncoding29692G29692TGT66B.1.1110.007051
noncoding29692G29692TGT66B.1.1600.000187
noncoding29692G29692TGT66B.1.1640.089552
noncoding29692G29692TGT66B.1.2190.056604
noncoding29692G29692TGT66B.1.2380.089552
noncoding29692G29692TGT55AY.120.10.001605
noncoding29692G29692TGT55AY.300.001979
noncoding29692G29692TGT55AY.580.004537
noncoding29692G29692TGT55AY.940.002213
noncoding29692G29692TGT55AY.980.000395
noncoding29692G29692TGT55B.1.36.380.00821
noncoding29692G29692TGT55B.1.4700.007022
noncoding29692G29692TGT55C.370.00058
noncoding29692G29692TGT55P.20.000933
noncoding29692G29692TGT44AE.80.001956
noncoding29692G29692TGT44AY.1000.000184
noncoding29692G29692TGT44AY.1180.000251
noncoding29692G29692TGT44AY.3.10.000341
noncoding29692G29692TGT44AY.320.00213
noncoding29692G29692TGT44AY.46.40.000658
noncoding29692G29692TGT44AY.530.00115
noncoding29692G29692TGT44AY.98.10.000194
noncoding29692G29692TGT44B.1.1.3120.007648
noncoding29692G29692TGT44B.1.1.3160.0037
noncoding29692G29692TGT44B.1.1.3650.022346
noncoding29692G29692TGT44B.1.6210.000354
noncoding29692G29692TGT33AY.230.000209
noncoding29692G29692TGT33AY.460.000312
noncoding29692G29692TGT33AY.540.000286
noncoding29692G29692TGT33AY.680.000821
noncoding29692G29692TGT33AY.70.000588
noncoding29692G29692TGT33B.1.1.1690.054545
noncoding29692G29692TGT33B.1.1.2140.000166
noncoding29692G29692TGT33B.1.1.2530.007519
noncoding29692G29692TGT33B.1.1.4340.001046
noncoding29692G29692TGT33B.1.4000.001287
noncoding29692G29692TGT33B.1.4590.012245
noncoding29692G29692TGT33B.1.4690.01083
noncoding29692G29692TGT33B.1.5820.001472
noncoding29692G29692TGT33C.140.012987
noncoding29692G29692TGT33P.1.100.000808
noncoding29692G29692TGT33Q.80.000495
noncoding29692G29692TGT22A.10.000564
noncoding29692G29692TGT22AD.20.000438
noncoding29692G29692TGT22AY.1100.000225
noncoding29692G29692TGT22AY.116.10.000623
noncoding29692G29692TGT22AY.120.000632
noncoding29692G29692TGT22AY.130.000322
noncoding29692G29692TGT22AY.140.000176
noncoding29692G29692TGT22AY.160.000759
noncoding29692G29692TGT22AY.20.000712
noncoding29692G29692TGT22AY.340.000194
noncoding29692G29692TGT22AY.410.000588
noncoding29692G29692TGT22AY.46.50.000397
noncoding29692G29692TGT22AY.550.001835
noncoding29692G29692TGT22AY.700.000417
noncoding29692G29692TGT22AY.770.002255
noncoding29692G29692TGT22AY.910.001461
noncoding29692G29692TGT22AY.990.002099
noncoding29692G29692TGT22AZ.20.001642
noncoding29692G29692TGT22B.1.1.1740.006757
noncoding29692G29692TGT22B.1.1.2360.013793
noncoding29692G29692TGT22B.1.1.2770.001517
noncoding29692G29692TGT22B.1.1.280.000622
noncoding29692G29692TGT22B.1.1.2910.001485
noncoding29692G29692TGT22B.1.1.2940.002532
noncoding29692G29692TGT22B.1.1.3170.000823
noncoding29692G29692TGT22B.1.1.3260.003521
noncoding29692G29692TGT22B.1.1.560.035714
noncoding29692G29692TGT22B.1.160.110.011429
noncoding29692G29692TGT22B.1.177.120.000303
noncoding29692G29692TGT22B.1.177.210.000153
noncoding29692G29692TGT22B.1.2370.00995
noncoding29692G29692TGT22B.1.258.170.000208
noncoding29692G29692TGT22B.1.2700.011236
noncoding29692G29692TGT22B.1.3240.00321
noncoding29692G29692TGT22B.1.3290.001215
noncoding29692G29692TGT22B.1.3490.00143
noncoding29692G29692TGT22B.1.3960.001411
noncoding29692G29692TGT22B.1.4510.016393
noncoding29692G29692TGT22B.1.5030.004975
noncoding29692G29692TGT22B.1.5250.000226
noncoding29692G29692TGT22B.1.5440.012048
noncoding29692G29692TGT22B.1.6090.000959
noncoding29692G29692TGT22B.1.617.10.000258
noncoding29692G29692TGT22B.1.6200.001892
noncoding29692G29692TGT22B.1.6360.013423
noncoding29692G29692TGT22P.1.10.000635
noncoding29692G29692TGT22R.10.00018
noncoding29692G29692TGT11A0.000387
noncoding29692G29692TGT11A.160.016129
noncoding29692G29692TGT11A.270.001656
noncoding29692G29692TGT11AP.10.001502
noncoding29692G29692TGT11AY.100.00053
noncoding29692G29692TGT11AY.1010.00049
noncoding29692G29692TGT11AY.1080.001103
noncoding29692G29692TGT11AY.110.001339
noncoding29692G29692TGT11AY.1130.000142
noncoding29692G29692TGT11AY.1160.000287
noncoding29692G29692TGT11AY.370.000316
noncoding29692G29692TGT11AY.480.000465
noncoding29692G29692TGT11AY.5.30.000337
noncoding29692G29692TGT11AY.570.000656
noncoding29692G29692TGT11AY.590.00053
noncoding29692G29692TGT11AY.7.10.000113
noncoding29692G29692TGT11AY.7.20.000559
noncoding29692G29692TGT11AY.920.000287
noncoding29692G29692TGT11AY.930.000273
noncoding29692G29692TGT11AY.950.000761
noncoding29692G29692TGT11AY.99.20.000092
noncoding29692G29692TGT11B.1.1.10.000327
noncoding29692G29692TGT11B.1.1.100.001115
noncoding29692G29692TGT11B.1.1.1410.002012
noncoding29692G29692TGT11B.1.1.1890.001513
noncoding29692G29692TGT11B.1.1.1920.002309
noncoding29692G29692TGT11B.1.1.1980.001468
noncoding29692G29692TGT11B.1.1.2160.00089
noncoding29692G29692TGT11B.1.1.2320.001815
noncoding29692G29692TGT11B.1.1.2620.015152
noncoding29692G29692TGT11B.1.1.2690.001353
noncoding29692G29692TGT11B.1.1.3060.000438
noncoding29692G29692TGT11B.1.1.330.000421
noncoding29692G29692TGT11B.1.1.3680.003086
noncoding29692G29692TGT11B.1.1.370.000193
noncoding29692G29692TGT11B.1.1.3740.002375
noncoding29692G29692TGT11B.1.1.4370.010417
noncoding29692G29692TGT11B.1.1.5170.006803
noncoding29692G29692TGT11B.1.1.830.00271
noncoding29692G29692TGT11B.1.1190.010526
noncoding29692G29692TGT11B.1.1570.002985
noncoding29692G29692TGT11B.1.177.100.000878
noncoding29692G29692TGT11B.1.177.350.000691
noncoding29692G29692TGT11B.1.177.40.000211
noncoding29692G29692TGT11B.1.177.480.003125
noncoding29692G29692TGT11B.1.177.50.001242
noncoding29692G29692TGT11B.1.177.570.000281
noncoding29692G29692TGT11B.1.177.790.002342
noncoding29692G29692TGT11B.1.2100.002132
noncoding29692G29692TGT11B.1.2400.000216
noncoding29692G29692TGT11B.1.2630.047619
noncoding29692G29692TGT11B.1.2840.013158
noncoding29692G29692TGT11B.1.3050.002151
noncoding29692G29692TGT11B.1.351.20.000303
noncoding29692G29692TGT11B.1.36.290.000517
noncoding29692G29692TGT11B.1.36.310.001751
noncoding29692G29692TGT11B.1.36.80.001
noncoding29692G29692TGT11B.1.416.10.001563
noncoding29692G29692TGT11B.1.4200.010417
noncoding29692G29692TGT11B.1.466.20.000391
noncoding29692G29692TGT11B.1.4990.00105
noncoding29692G29692TGT11B.1.5050.004386
noncoding29692G29692TGT11B.1.5090.000866
noncoding29692G29692TGT11B.1.5270.003704
noncoding29692G29692TGT11B.1.5430.01
noncoding29692G29692TGT11B.1.5580.004566
noncoding29692G29692TGT11B.1.5680.001111
noncoding29692G29692TGT11B.1.5750.000303
noncoding29692G29692TGT11B.1.5880.00091
noncoding29692G29692TGT11B.1.5900.004545
noncoding29692G29692TGT11B.30.000831
noncoding29692G29692TGT11B.310.003731
noncoding29692G29692TGT11K.10.02381
noncoding29692G29692TGT11P.1.170.000162
noncoding29692G29692TGT11P.60.003145
noncoding29692G29692TGT11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.