CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29688 | G29688T | noncoding | G | T | 10163 | 10163 | 1 | 29688-29688 | |
noncoding | 29688 | G29688C | noncoding | G | C | 1912 | 1912 | 1 | 29688-29688 | |
noncoding | 29688 | G29688- | noncoding | G | - | 400 | 400 | 1 | 29688-29688 | |
noncoding | 29688 | G29688A | noncoding | G | A | 113 | 113 | 1 | 29688-29688 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29688 | G29688T | G | T | 10163 | 10163 | All | 0.001944 |
noncoding | 29688 | G29688T | G | T | 2326 | 2326 | B.1.1.7 | 0.002082 |
noncoding | 29688 | G29688C | G | C | 1912 | 1912 | All | 0.000366 |
noncoding | 29688 | G29688T | G | T | 1329 | 1329 | AY.64 | 0.791071 |
noncoding | 29688 | G29688C | G | C | 1285 | 1285 | B.1.617.2 | 0.004839 |
noncoding | 29688 | G29688T | G | T | 1040 | 1040 | B.1.617.2 | 0.003916 |
noncoding | 29688 | G29688T | G | T | 898 | 898 | AY.4 | 0.001398 |
noncoding | 29688 | G29688T | G | T | 828 | 828 | AY.43 | 0.003668 |
noncoding | 29688 | G29688T | G | T | 489 | 489 | AY.102 | 0.012965 |
noncoding | 29688 | G29688- | G | - | 400 | 400 | All | 0.000077 |
noncoding | 29688 | G29688T | G | T | 337 | 337 | AY.44 | 0.002051 |
noncoding | 29688 | G29688T | G | T | 174 | 174 | B.1.1 | 0.003157 |
noncoding | 29688 | G29688T | G | T | 171 | 171 | AY.119 | 0.006038 |
noncoding | 29688 | G29688C | G | C | 159 | 159 | B.1.2 | 0.0014 |
noncoding | 29688 | G29688T | G | T | 142 | 142 | P.1 | 0.002237 |
noncoding | 29688 | G29688T | G | T | 135 | 135 | AY.33 | 0.009015 |
noncoding | 29688 | G29688C | G | C | 126 | 126 | B.1.1.7 | 0.000113 |
noncoding | 29688 | G29688T | G | T | 114 | 114 | AY.103 | 0.000708 |
noncoding | 29688 | G29688A | G | A | 113 | 113 | All | 0.000022 |
noncoding | 29688 | G29688C | G | C | 104 | 104 | AY.43 | 0.000461 |
noncoding | 29688 | G29688T | G | T | 102 | 102 | B.1.240 | 0.021987 |
noncoding | 29688 | G29688T | G | T | 99 | 99 | AY.39 | 0.002446 |
noncoding | 29688 | G29688T | G | T | 93 | 93 | AY.114 | 0.021493 |
noncoding | 29688 | G29688T | G | T | 93 | 93 | B.1 | 0.000852 |
noncoding | 29688 | G29688T | G | T | 74 | 74 | AY.4.5 | 0.007954 |
noncoding | 29688 | G29688T | G | T | 72 | 72 | B.1.243 | 0.00501 |
noncoding | 29688 | G29688T | G | T | 70 | 70 | B.1.2 | 0.000616 |
noncoding | 29688 | G29688T | G | T | 57 | 57 | AY.25 | 0.000343 |
noncoding | 29688 | G29688T | G | T | 57 | 57 | B.1.177 | 0.000751 |
noncoding | 29688 | G29688T | G | T | 54 | 54 | AY.3 | 0.000537 |
noncoding | 29688 | G29688T | G | T | 54 | 54 | AY.98.1 | 0.002615 |
noncoding | 29688 | G29688C | G | C | 49 | 49 | AY.44 | 0.000298 |
noncoding | 29688 | G29688T | G | T | 48 | 48 | AY.6 | 0.001974 |
noncoding | 29688 | G29688T | G | T | 44 | 44 | B.1.438.1 | 0.00472 |
noncoding | 29688 | G29688- | G | - | 43 | 43 | B.1.1.7 | 0.000038 |
noncoding | 29688 | G29688T | G | T | 41 | 41 | AY.5 | 0.000847 |
noncoding | 29688 | G29688T | G | T | 39 | 39 | AY.4.2 | 0.000846 |
noncoding | 29688 | G29688A | G | A | 36 | 36 | R.1 | 0.00324 |
noncoding | 29688 | G29688C | G | C | 34 | 34 | AY.102 | 0.000901 |
noncoding | 29688 | G29688T | G | T | 34 | 34 | AY.20 | 0.001321 |
noncoding | 29688 | G29688- | G | - | 34 | 34 | B.1.2 | 0.000299 |
noncoding | 29688 | G29688- | G | - | 33 | 33 | AY.4 | 0.000051 |
noncoding | 29688 | G29688- | G | - | 32 | 32 | AY.103 | 0.000199 |
noncoding | 29688 | G29688T | G | T | 30 | 30 | B.1.559 | 0.75 |
noncoding | 29688 | G29688T | G | T | 27 | 27 | B.1.234 | 0.003562 |
noncoding | 29688 | G29688C | G | C | 26 | 26 | B.1.177.87 | 0.018923 |
noncoding | 29688 | G29688T | G | T | 24 | 24 | B.1.1.519 | 0.000953 |
noncoding | 29688 | G29688A | G | A | 23 | 23 | AY.4 | 0.000036 |
noncoding | 29688 | G29688T | G | T | 23 | 23 | AY.42 | 0.000925 |
noncoding | 29688 | G29688T | G | T | 23 | 23 | B.1.1.277 | 0.017451 |
noncoding | 29688 | G29688T | G | T | 22 | 22 | B.1.160 | 0.000686 |
noncoding | 29688 | G29688- | G | - | 22 | 22 | B.1.617.2 | 0.000083 |
noncoding | 29688 | G29688T | G | T | 22 | 22 | P.1.4 | 0.021484 |
noncoding | 29688 | G29688T | G | T | 21 | 21 | B.1.177.60 | 0.004587 |
noncoding | 29688 | G29688T | G | T | 21 | 21 | B.1.596.1 | 0.196262 |
noncoding | 29688 | G29688T | G | T | 20 | 20 | AY.46 | 0.002082 |
noncoding | 29688 | G29688T | G | T | 19 | 19 | AY.9.2 | 0.000698 |
noncoding | 29688 | G29688T | G | T | 18 | 18 | AY.35 | 0.004195 |
noncoding | 29688 | G29688T | G | T | 18 | 18 | AY.99.2 | 0.001659 |
noncoding | 29688 | G29688T | G | T | 18 | 18 | B.1.36 | 0.002626 |
noncoding | 29688 | G29688- | G | - | 17 | 17 | AY.25 | 0.000102 |
noncoding | 29688 | G29688T | G | T | 17 | 17 | AY.26 | 0.000481 |
noncoding | 29688 | G29688T | G | T | 17 | 17 | AY.30 | 0.006727 |
noncoding | 29688 | G29688T | G | T | 17 | 17 | AY.5.3 | 0.005735 |
noncoding | 29688 | G29688T | G | T | 17 | 17 | AY.75 | 0.000952 |
noncoding | 29688 | G29688C | G | C | 16 | 16 | AY.4 | 0.000025 |
noncoding | 29688 | G29688T | G | T | 16 | 16 | AY.47 | 0.000498 |
noncoding | 29688 | G29688T | G | T | 15 | 15 | AY.116.1 | 0.004671 |
noncoding | 29688 | G29688T | G | T | 15 | 15 | B.1.258 | 0.000998 |
noncoding | 29688 | G29688T | G | T | 15 | 15 | B.1.609 | 0.007191 |
noncoding | 29688 | G29688T | G | T | 14 | 14 | AY.29 | 0.000221 |
noncoding | 29688 | G29688C | G | C | 14 | 14 | AY.39 | 0.000346 |
noncoding | 29688 | G29688T | G | T | 14 | 14 | AY.61 | 0.001467 |
noncoding | 29688 | G29688T | G | T | 14 | 14 | B.1.177.52 | 0.024605 |
noncoding | 29688 | G29688- | G | - | 13 | 13 | AY.3 | 0.000129 |
noncoding | 29688 | G29688- | G | - | 13 | 13 | AY.44 | 0.000079 |
noncoding | 29688 | G29688T | G | T | 13 | 13 | B.1.221 | 0.000923 |
noncoding | 29688 | G29688T | G | T | 13 | 13 | B.1.36.29 | 0.006725 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | A.2.4 | 0.040404 |
noncoding | 29688 | G29688- | G | - | 12 | 12 | AY.42 | 0.000483 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | AY.46.2 | 0.007624 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | AY.65 | 0.006397 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | B.1.157 | 0.035821 |
noncoding | 29688 | G29688- | G | - | 12 | 12 | B.1.177 | 0.000158 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | B.1.351 | 0.000357 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | B.1.429 | 0.000282 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | B.1.526 | 0.000282 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | P.1.10 | 0.003234 |
noncoding | 29688 | G29688T | G | T | 12 | 12 | Q.3 | 0.00174 |
noncoding | 29688 | G29688T | G | T | 11 | 11 | AY.117 | 0.00093 |
noncoding | 29688 | G29688T | G | T | 11 | 11 | AY.54 | 0.001049 |
noncoding | 29688 | G29688T | G | T | 10 | 10 | AY.3.1 | 0.000853 |
noncoding | 29688 | G29688T | G | T | 10 | 10 | B.1.617.1 | 0.00129 |
noncoding | 29688 | G29688T | G | T | 9 | 9 | AY.23 | 0.000628 |
noncoding | 29688 | G29688A | G | A | 9 | 9 | B.1.1.7 | 0.000008 |
noncoding | 29688 | G29688T | G | T | 8 | 8 | A.1 | 0.002255 |
noncoding | 29688 | G29688T | G | T | 8 | 8 | AY.118 | 0.000501 |
noncoding | 29688 | G29688- | G | - | 8 | 8 | AY.47 | 0.000249 |
noncoding | 29688 | G29688T | G | T | 8 | 8 | B.1.427 | 0.000404 |
noncoding | 29688 | G29688- | G | - | 8 | 8 | P.1 | 0.000126 |
noncoding | 29688 | G29688T | G | T | 8 | 8 | Q.8 | 0.001319 |
noncoding | 29688 | G29688T | G | T | 7 | 7 | AY.13 | 0.001127 |
noncoding | 29688 | G29688T | G | T | 7 | 7 | AY.45 | 0.000852 |
noncoding | 29688 | G29688T | G | T | 7 | 7 | AY.9.1 | 0.000586 |
noncoding | 29688 | G29688T | G | T | 7 | 7 | B.1.1.294 | 0.008861 |
noncoding | 29688 | G29688- | G | - | 7 | 7 | B.1.1.46 | 0.030568 |
noncoding | 29688 | G29688- | G | - | 7 | 7 | B.1.210 | 0.014925 |
noncoding | 29688 | G29688T | G | T | 7 | 7 | B.1.525 | 0.000792 |
noncoding | 29688 | G29688T | G | T | 7 | 7 | B.1.621 | 0.00062 |
noncoding | 29688 | G29688T | G | T | 7 | 7 | P.1.15 | 0.001626 |
noncoding | 29688 | G29688C | G | C | 6 | 6 | AY.103 | 0.000037 |
noncoding | 29688 | G29688C | G | C | 6 | 6 | AY.26 | 0.00017 |
noncoding | 29688 | G29688- | G | - | 6 | 6 | AY.43 | 0.000027 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | AY.55 | 0.005505 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | B | 0.000767 |
noncoding | 29688 | G29688- | G | - | 6 | 6 | B.1 | 0.000055 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | B.1.1.153 | 0.006572 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | B.1.177.87 | 0.004367 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | B.1.470 | 0.008427 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | B.1.575 | 0.00182 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | B.1.628 | 0.002114 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | B.40 | 0.002186 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | P.1.14 | 0.000287 |
noncoding | 29688 | G29688T | G | T | 6 | 6 | P.2 | 0.00112 |
noncoding | 29688 | G29688C | G | C | 5 | 5 | AY.100 | 0.00023 |
noncoding | 29688 | G29688C | G | C | 5 | 5 | AY.119 | 0.000177 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | AY.24 | 0.002155 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | AY.27 | 0.000324 |
noncoding | 29688 | G29688C | G | C | 5 | 5 | AY.3 | 0.00005 |
noncoding | 29688 | G29688- | G | - | 5 | 5 | AY.3.1 | 0.000426 |
noncoding | 29688 | G29688- | G | - | 5 | 5 | AY.39 | 0.000124 |
noncoding | 29688 | G29688- | G | - | 5 | 5 | AY.9.2 | 0.000184 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | AY.98 | 0.000395 |
noncoding | 29688 | G29688C | G | C | 5 | 5 | B.1 | 0.000046 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | B.1.1.28 | 0.001556 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | B.1.1.284 | 0.000537 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | B.1.1.348 | 0.003981 |
noncoding | 29688 | G29688- | G | - | 5 | 5 | B.1.258 | 0.000333 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | B.1.36.8 | 0.005 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | B.1.407 | 0.178571 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | B.1.618 | 0.020161 |
noncoding | 29688 | G29688T | G | T | 5 | 5 | B.1.637 | 0.000365 |
noncoding | 29688 | G29688C | G | C | 5 | 5 | P.1 | 0.000079 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | A.23.1 | 0.002817 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AU.3 | 0.008439 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.106 | 0.00134 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.113 | 0.00057 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.116 | 0.001147 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.120 | 0.000149 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.14 | 0.000352 |
noncoding | 29688 | G29688- | G | - | 4 | 4 | AY.4.2 | 0.000087 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.46.3 | 0.003735 |
noncoding | 29688 | G29688- | G | - | 4 | 4 | AY.75 | 0.000224 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.75.1 | 0.000721 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.81 | 0.007968 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | AY.9 | 0.00027 |
noncoding | 29688 | G29688C | G | C | 4 | 4 | AY.91 | 0.002922 |
noncoding | 29688 | G29688- | G | - | 4 | 4 | B.1.1 | 0.000073 |
noncoding | 29688 | G29688C | G | C | 4 | 4 | B.1.1.284 | 0.00043 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | B.1.1.416 | 0.00362 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | B.1.1.47 | 0.02139 |
noncoding | 29688 | G29688- | G | - | 4 | 4 | B.1.243 | 0.000278 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | B.1.349 | 0.002859 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | B.1.350 | 0.01173 |
noncoding | 29688 | G29688C | G | C | 4 | 4 | B.1.351 | 0.000119 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | B.1.351.2 | 0.00121 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | B.1.351.3 | 0.003506 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | B.1.561 | 0.001588 |
noncoding | 29688 | G29688C | G | C | 4 | 4 | B.1.628 | 0.001409 |
noncoding | 29688 | G29688T | G | T | 4 | 4 | C.37 | 0.000464 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | AY.121 | 0.000406 |
noncoding | 29688 | G29688C | G | C | 3 | 3 | AY.25 | 0.000018 |
noncoding | 29688 | G29688A | G | A | 3 | 3 | AY.3 | 0.00003 |
noncoding | 29688 | G29688A | G | A | 3 | 3 | AY.39 | 0.000074 |
noncoding | 29688 | G29688A | G | A | 3 | 3 | AY.44 | 0.000018 |
noncoding | 29688 | G29688- | G | - | 3 | 3 | AY.46.4 | 0.000494 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | AY.52 | 0.002443 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | AY.67 | 0.001393 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | AY.68 | 0.000821 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | AY.73 | 0.001996 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | AY.74 | 0.000347 |
noncoding | 29688 | G29688A | G | A | 3 | 3 | B.1 | 0.000027 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.1.1 | 0.00098 |
noncoding | 29688 | G29688- | G | - | 3 | 3 | B.1.1.194 | 0.014851 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.1.219 | 0.015 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.1.222 | 0.000612 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.1.25 | 0.001706 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.1.318 | 0.000905 |
noncoding | 29688 | G29688- | G | - | 3 | 3 | B.1.147 | 0.002268 |
noncoding | 29688 | G29688- | G | - | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.311 | 0.000824 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | B.1.369 | 0.000856 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | C.14 | 0.012987 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | C.16 | 0.003181 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | C.36 | 0.002732 |
noncoding | 29688 | G29688- | G | - | 3 | 3 | C.37 | 0.000348 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | D.2 | 0.000225 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | P.1.9 | 0.014423 |
noncoding | 29688 | G29688T | G | T | 3 | 3 | R.1 | 0.00027 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | A.1 | 0.000564 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AD.2 | 0.000438 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.10 | 0.00106 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.102 | 0.000053 |
noncoding | 29688 | G29688A | G | A | 2 | 2 | AY.102 | 0.000053 |
noncoding | 29688 | G29688A | G | A | 2 | 2 | AY.103 | 0.000012 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.105 | 0.001286 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.111 | 0.000366 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.118 | 0.000125 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.16 | 0.000759 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.16.1 | 0.00094 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29688 | G29688A | G | A | 2 | 2 | AY.20 | 0.000078 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.29 | 0.000032 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.39.1 | 0.000079 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.4.2.1 | 0.000298 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.45 | 0.000243 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.46.6 | 0.000144 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | AY.47 | 0.000062 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.5 | 0.000041 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.5.4 | 0.000553 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | AY.61 | 0.00021 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.62 | 0.000871 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | AY.64 | 0.00119 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | AY.92 | 0.000575 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | AY.99 | 0.002099 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.216 | 0.001781 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | B.1.1.222 | 0.000408 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.230 | 0.018349 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.269 | 0.002706 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.316 | 0.00185 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.317 | 0.000823 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.37 | 0.000386 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | B.1.1.416 | 0.00181 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.434 | 0.000697 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.1.466 | 0.017391 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | B.1.1.519 | 0.000079 |
noncoding | 29688 | G29688A | G | A | 2 | 2 | B.1.1.519 | 0.000079 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | B.1.160.33 | 0.00885 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.177.73 | 0.001133 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.177.75 | 0.002081 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.214 | 0.007326 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.236 | 0.004107 |
noncoding | 29688 | G29688A | G | A | 2 | 2 | B.1.243.1 | 0.044444 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.293 | 0.025 |
noncoding | 29688 | G29688- | G | - | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.362 | 0.003082 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.466.2 | 0.000782 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.497 | 0.00063 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.527 | 0.007407 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.544 | 0.012048 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.577 | 0.001375 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.582 | 0.000981 |
noncoding | 29688 | G29688C | G | C | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.619 | 0.001742 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.621.1 | 0.001012 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | B.1.633 | 0.083333 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | P.1.13 | 0.001797 |
noncoding | 29688 | G29688T | G | T | 2 | 2 | P.1.2 | 0.002312 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | A | 0.000387 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | A | 0.000387 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | A.2.5 | 0.000499 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | A.27 | 0.001656 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AE.8 | 0.000489 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.1 | 0.000396 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.100 | 0.000046 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.101 | 0.00049 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.109 | 0.00074 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.113 | 0.000142 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.119 | 0.000035 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.16.1 | 0.00047 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.25 | 0.000006 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.28 | 0.00189 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.29 | 0.000016 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.32 | 0.000532 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.39.1.1 | 0.000725 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.46 | 0.000104 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.46.1 | 0.001027 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.46.4 | 0.000165 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.47 | 0.000031 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.5 | 0.000021 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.51 | 0.000909 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.51 | 0.000909 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.53 | 0.000288 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.59 | 0.00053 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.60 | 0.000938 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.65 | 0.000533 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.7 | 0.000196 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.7.1 | 0.000113 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.7.2 | 0.000559 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.70 | 0.000209 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.72 | 0.001361 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.72 | 0.001361 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.75 | 0.000056 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.77 | 0.001127 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.80 | 0.001129 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.87 | 0.000833 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.88 | 0.000884 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | AY.90 | 0.000684 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B | 0.000128 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B | 0.000128 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.161 | 0.003534 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.241 | 0.00207 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.282 | 0.011628 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.1.316 | 0.000925 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.368 | 0.003086 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.398 | 0.003226 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.402 | 0.011111 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.404 | 0.015873 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.413 | 0.006897 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.419 | 0.007407 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.433 | 0.001425 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.519 | 0.00004 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.1.523 | 0.001563 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.55 | 0.012987 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.59 | 0.006494 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.1.63 | 0.000386 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.126 | 0.001276 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.128 | 0.000635 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.139 | 0.000733 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.160.14 | 0.002119 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.160.8 | 0.001289 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.177 | 0.000013 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.177.17 | 0.000821 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.177.33 | 0.001645 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.177.77 | 0.000726 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.177.77 | 0.000726 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.177.82 | 0.000477 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.195 | 0.005025 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.214.2 | 0.0006 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.22 | 0.001318 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.232 | 0.000537 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.258.3 | 0.001675 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.265 | 0.001271 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.279 | 0.000514 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.324 | 0.001605 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.398 | 0.002976 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.399 | 0.001934 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.408 | 0.00369 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.421 | 0.007463 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.423 | 0.010204 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.459 | 0.004082 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.468 | 0.005714 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.471 | 0.002732 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.499 | 0.00105 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.499 | 0.00105 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.499 | 0.00105 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.503 | 0.002488 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.558 | 0.004566 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.565 | 0.00081 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.568 | 0.001111 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.588 | 0.00091 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.602 | 0.006536 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.612 | 0.002653 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.1.617.2 | 0.000004 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.1.9.5 | 0.005682 |
noncoding | 29688 | G29688A | G | A | 1 | 1 | B.3 | 0.000831 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.3.1 | 0.001658 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.58 | 0.010204 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.6 | 0.00091 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | B.6.8 | 0.008264 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | B.60 | 0.015873 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | C.30 | 0.001727 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | C.40 | 0.027778 |
noncoding | 29688 | G29688C | G | C | 1 | 1 | L.2 | 0.011364 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | L.3 | 0.003546 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29688 | G29688- | G | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29688 | G29688T | G | T | 1 | 1 | P.6 | 0.003145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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