CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29687

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	29687	A29687T		noncoding	A	T	391	391	1	29687-29687
noncoding	29687	A29687-		noncoding	A	-	354	354	1	29687-29687
noncoding	29687	A29687G		noncoding	A	G	314	314	1	29687-29687
noncoding	29687	A29687C		noncoding	A	C	201	201	1	29687-29687
noncoding	29687	A29687H		noncoding	A	H	3	3	1	29687-29687
noncoding	29687	A29687K		noncoding	A	K	1	1	1	29687-29687
noncoding	29687	A29687D		noncoding	A	D	1	1	1	29687-29687

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	29687	A29687T	A	T	391	391	All	0.000075
noncoding	29687	A29687-	A	-	354	354	All	0.000068
noncoding	29687	A29687G	A	G	314	314	All	0.00006
noncoding	29687	A29687T	A	T	259	259	AY.29	0.004085
noncoding	29687	A29687C	A	C	201	201	All	0.000038
noncoding	29687	A29687C	A	C	75	75	U.1	0.961538
noncoding	29687	A29687G	A	G	74	74	B.1.617.2	0.000279
noncoding	29687	A29687G	A	G	62	62	AY.100	0.002852
noncoding	29687	A29687T	A	T	40	40	AY.33	0.002671
noncoding	29687	A29687G	A	G	34	34	B.1.160	0.00106
noncoding	29687	A29687-	A	-	32	32	AY.4	0.00005
noncoding	29687	A29687-	A	-	32	32	B.1.1.7	0.000029
noncoding	29687	A29687-	A	-	31	31	AY.103	0.000192
noncoding	29687	A29687-	A	-	31	31	B.1.2	0.000273
noncoding	29687	A29687C	A	C	30	30	B.1.1.7	0.000027
noncoding	29687	A29687G	A	G	25	25	AY.44	0.000152
noncoding	29687	A29687T	A	T	25	25	B.1.1.7	0.000022
noncoding	29687	A29687-	A	-	21	21	B.1.617.2	0.000079
noncoding	29687	A29687G	A	G	18	18	B.1.1.7	0.000016
noncoding	29687	A29687-	A	-	16	16	AY.25	0.000096
noncoding	29687	A29687G	A	G	15	15	AY.43	0.000066
noncoding	29687	A29687-	A	-	15	15	AY.44	0.000091
noncoding	29687	A29687-	A	-	13	13	AY.3	0.000129
noncoding	29687	A29687C	A	C	11	11	AY.43	0.000049
noncoding	29687	A29687-	A	-	11	11	AY.47	0.000342
noncoding	29687	A29687T	A	T	11	11	B.1.637	0.000804
noncoding	29687	A29687G	A	G	10	10	AY.4	0.000016
noncoding	29687	A29687T	A	T	10	10	B.1.1.1	0.003267
noncoding	29687	A29687-	A	-	10	10	B.1.177	0.000132
noncoding	29687	A29687G	A	G	9	9	AY.103	0.000056
noncoding	29687	A29687G	A	G	9	9	B.1.526	0.000212
noncoding	29687	A29687-	A	-	8	8	AY.43	0.000035
noncoding	29687	A29687C	A	C	8	8	P.3	0.012759
noncoding	29687	A29687T	A	T	7	7	AY.4	0.000011
noncoding	29687	A29687-	A	-	7	7	B.1	0.000064
noncoding	29687	A29687-	A	-	7	7	B.1.1.46	0.030568
noncoding	29687	A29687-	A	-	7	7	B.1.210	0.014925
noncoding	29687	A29687-	A	-	7	7	P.1	0.00011
noncoding	29687	A29687C	A	C	6	6	AY.3	0.00006
noncoding	29687	A29687T	A	T	6	6	AY.46	0.000624
noncoding	29687	A29687-	A	-	5	5	AY.3.1	0.000426
noncoding	29687	A29687-	A	-	5	5	AY.9.2	0.000184
noncoding	29687	A29687G	A	G	5	5	AY.98.1	0.000242
noncoding	29687	A29687C	A	C	5	5	B.1.1	0.000091
noncoding	29687	A29687C	A	C	5	5	B.1.2	0.000044
noncoding	29687	A29687-	A	-	5	5	B.1.258	0.000333
noncoding	29687	A29687G	A	G	4	4	AY.13	0.000644
noncoding	29687	A29687T	A	T	4	4	AY.25	0.000024
noncoding	29687	A29687-	A	-	4	4	B.1.1	0.000073
noncoding	29687	A29687G	A	G	4	4	B.1.177.55	0.009324
noncoding	29687	A29687C	A	C	4	4	B.1.429	0.000094
noncoding	29687	A29687H	A	H	3	3	All	0.000001
noncoding	29687	A29687C	A	C	3	3	AY.21	0.005693
noncoding	29687	A29687G	A	G	3	3	AY.23	0.000209
noncoding	29687	A29687C	A	C	3	3	AY.25	0.000018
noncoding	29687	A29687C	A	C	3	3	AY.39	0.000074
noncoding	29687	A29687-	A	-	3	3	AY.46.4	0.000494
noncoding	29687	A29687-	A	-	3	3	AY.75	0.000168
noncoding	29687	A29687-	A	-	3	3	B.1.1.194	0.014851
noncoding	29687	A29687-	A	-	3	3	C.37	0.000348
noncoding	29687	A29687C	A	C	3	3	P.1	0.000047
noncoding	29687	A29687G	A	G	3	3	P.1	0.000047
noncoding	29687	A29687-	A	-	2	2	AD.2	0.000438
noncoding	29687	A29687G	A	G	2	2	AY.102	0.000053
noncoding	29687	A29687C	A	C	2	2	AY.102	0.000053
noncoding	29687	A29687-	A	-	2	2	AY.102	0.000053
noncoding	29687	A29687C	A	C	2	2	AY.103	0.000012
noncoding	29687	A29687G	A	G	2	2	AY.117	0.000169
noncoding	29687	A29687G	A	G	2	2	AY.27	0.000129
noncoding	29687	A29687-	A	-	2	2	AY.29	0.000032
noncoding	29687	A29687G	A	G	2	2	AY.3	0.00002
noncoding	29687	A29687-	A	-	2	2	AY.39	0.000049
noncoding	29687	A29687C	A	C	2	2	AY.46.6	0.000144
noncoding	29687	A29687-	A	-	2	2	AY.46.6	0.000144
noncoding	29687	A29687-	A	-	2	2	AY.5	0.000041
noncoding	29687	A29687-	A	-	2	2	AY.62	0.000871
noncoding	29687	A29687-	A	-	2	2	AY.64	0.00119
noncoding	29687	A29687G	A	G	2	2	AY.72	0.002721
noncoding	29687	A29687T	A	T	2	2	B.1	0.000018
noncoding	29687	A29687C	A	C	2	2	B.1	0.000018
noncoding	29687	A29687T	A	T	2	2	B.1.1	0.000036
noncoding	29687	A29687-	A	-	2	2	B.1.1.306	0.000877
noncoding	29687	A29687-	A	-	2	2	B.1.1.416	0.00181
noncoding	29687	A29687-	A	-	2	2	B.1.160.33	0.00885
noncoding	29687	A29687T	A	T	2	2	B.1.2	0.000018
noncoding	29687	A29687-	A	-	2	2	B.1.221	0.000142
noncoding	29687	A29687C	A	C	2	2	B.1.351	0.000059
noncoding	29687	A29687-	A	-	2	2	B.1.36.8	0.002
noncoding	29687	A29687C	A	C	2	2	B.1.525	0.000226
noncoding	29687	A29687C	A	C	2	2	B.1.526	0.000047
noncoding	29687	A29687C	A	C	2	2	B.1.609	0.000959
noncoding	29687	A29687C	A	C	2	2	B.1.617.2	0.000008
noncoding	29687	A29687T	A	T	2	2	B.1.621	0.000177
noncoding	29687	A29687T	A	T	2	2	P.1	0.000032
noncoding	29687	A29687T	A	T	1	1	A	0.000387
noncoding	29687	A29687-	A	-	1	1	A.1	0.000282
noncoding	29687	A29687K	A	K	1	1	All	0
noncoding	29687	A29687D	A	D	1	1	All	0
noncoding	29687	A29687C	A	C	1	1	AY.1	0.000396
noncoding	29687	A29687T	A	T	1	1	AY.109	0.00074
noncoding	29687	A29687C	A	C	1	1	AY.113	0.000142
noncoding	29687	A29687-	A	-	1	1	AY.117	0.000085
noncoding	29687	A29687C	A	C	1	1	AY.117	0.000085
noncoding	29687	A29687-	A	-	1	1	AY.118	0.000063
noncoding	29687	A29687C	A	C	1	1	AY.12	0.000316
noncoding	29687	A29687C	A	C	1	1	AY.120	0.000037
noncoding	29687	A29687G	A	G	1	1	AY.120.1	0.000321
noncoding	29687	A29687G	A	G	1	1	AY.16.1	0.00047
noncoding	29687	A29687-	A	-	1	1	AY.20	0.000039
noncoding	29687	A29687G	A	G	1	1	AY.20	0.000039
noncoding	29687	A29687-	A	-	1	1	AY.23	0.00007
noncoding	29687	A29687K	A	K	1	1	AY.23	0.00007
noncoding	29687	A29687G	A	G	1	1	AY.25	0.000006
noncoding	29687	A29687G	A	G	1	1	AY.26	0.000028
noncoding	29687	A29687C	A	C	1	1	AY.3.1	0.000085
noncoding	29687	A29687-	A	-	1	1	AY.33	0.000067
noncoding	29687	A29687T	A	T	1	1	AY.34	0.000097
noncoding	29687	A29687-	A	-	1	1	AY.34	0.000097
noncoding	29687	A29687H	A	H	1	1	AY.36	0.000148
noncoding	29687	A29687C	A	C	1	1	AY.36	0.000148
noncoding	29687	A29687T	A	T	1	1	AY.39	0.000025
noncoding	29687	A29687-	A	-	1	1	AY.4.2	0.000022
noncoding	29687	A29687-	A	-	1	1	AY.40	0.000964
noncoding	29687	A29687T	A	T	1	1	AY.43	0.000004
noncoding	29687	A29687C	A	C	1	1	AY.44	0.000006
noncoding	29687	A29687-	A	-	1	1	AY.45	0.000122
noncoding	29687	A29687G	A	G	1	1	AY.46	0.000104
noncoding	29687	A29687-	A	-	1	1	AY.46.1	0.001027
noncoding	29687	A29687G	A	G	1	1	AY.46.5	0.000198
noncoding	29687	A29687G	A	G	1	1	AY.47	0.000031
noncoding	29687	A29687-	A	-	1	1	AY.5.3	0.000337
noncoding	29687	A29687G	A	G	1	1	AY.53	0.000288
noncoding	29687	A29687C	A	C	1	1	AY.6	0.000041
noncoding	29687	A29687G	A	G	1	1	AY.61	0.000105
noncoding	29687	A29687-	A	-	1	1	AY.65	0.000533
noncoding	29687	A29687-	A	-	1	1	AY.68	0.000274
noncoding	29687	A29687G	A	G	1	1	AY.7.1	0.000113
noncoding	29687	A29687-	A	-	1	1	AY.72	0.001361
noncoding	29687	A29687G	A	G	1	1	AY.75	0.000056
noncoding	29687	A29687-	A	-	1	1	AY.75.1	0.00018
noncoding	29687	A29687C	A	C	1	1	AY.84	0.000437
noncoding	29687	A29687C	A	C	1	1	AY.9.2	0.000037
noncoding	29687	A29687C	A	C	1	1	AY.91	0.00073
noncoding	29687	A29687-	A	-	1	1	AY.91	0.00073
noncoding	29687	A29687-	A	-	1	1	AY.99	0.001049
noncoding	29687	A29687C	A	C	1	1	AZ.2	0.000821
noncoding	29687	A29687G	A	G	1	1	B	0.000128
noncoding	29687	A29687-	A	-	1	1	B	0.000128
noncoding	29687	A29687G	A	G	1	1	B.1	0.000009
noncoding	29687	A29687G	A	G	1	1	B.1.1	0.000018
noncoding	29687	A29687-	A	-	1	1	B.1.1.197	0.037037
noncoding	29687	A29687G	A	G	1	1	B.1.1.214	0.000055
noncoding	29687	A29687G	A	G	1	1	B.1.1.216	0.00089
noncoding	29687	A29687-	A	-	1	1	B.1.1.218	0.007692
noncoding	29687	A29687-	A	-	1	1	B.1.1.222	0.000204
noncoding	29687	A29687H	A	H	1	1	B.1.1.222	0.000204
noncoding	29687	A29687-	A	-	1	1	B.1.1.269	0.001353
noncoding	29687	A29687-	A	-	1	1	B.1.1.277	0.000759
noncoding	29687	A29687G	A	G	1	1	B.1.1.284	0.000107
noncoding	29687	A29687C	A	C	1	1	B.1.1.339	0.010526
noncoding	29687	A29687-	A	-	1	1	B.1.1.348	0.000796
noncoding	29687	A29687-	A	-	1	1	B.1.1.37	0.000193
noncoding	29687	A29687-	A	-	1	1	B.1.1.409	0.002833
noncoding	29687	A29687T	A	T	1	1	B.1.1.416	0.000905
noncoding	29687	A29687C	A	C	1	1	B.1.1.50	0.000679
noncoding	29687	A29687G	A	G	1	1	B.1.1.519	0.00004
noncoding	29687	A29687-	A	-	1	1	B.1.1.519	0.00004
noncoding	29687	A29687H	A	H	1	1	B.1.1.7	0.000001
noncoding	29687	A29687D	A	D	1	1	B.1.1.7	0.000001
noncoding	29687	A29687-	A	-	1	1	B.1.1.70	0.000341
noncoding	29687	A29687T	A	T	1	1	B.1.160	0.000031
noncoding	29687	A29687-	A	-	1	1	B.1.160	0.000031
noncoding	29687	A29687C	A	C	1	1	B.1.160	0.000031
noncoding	29687	A29687-	A	-	1	1	B.1.160.14	0.002119
noncoding	29687	A29687G	A	G	1	1	B.1.170	0.00431
noncoding	29687	A29687C	A	C	1	1	B.1.177	0.000013
noncoding	29687	A29687C	A	C	1	1	B.1.177.42	0.000894
noncoding	29687	A29687G	A	G	1	1	B.1.177.63	0.002703
noncoding	29687	A29687C	A	C	1	1	B.1.177.77	0.000726
noncoding	29687	A29687G	A	G	1	1	B.1.2	0.000009
noncoding	29687	A29687G	A	G	1	1	B.1.240	0.000216
noncoding	29687	A29687C	A	C	1	1	B.1.241	0.000812
noncoding	29687	A29687-	A	-	1	1	B.1.243	0.00007
noncoding	29687	A29687C	A	C	1	1	B.1.243	0.00007
noncoding	29687	A29687T	A	T	1	1	B.1.243	0.00007
noncoding	29687	A29687C	A	C	1	1	B.1.258	0.000067
noncoding	29687	A29687-	A	-	1	1	B.1.258.16	0.001637
noncoding	29687	A29687-	A	-	1	1	B.1.298	0.002114
noncoding	29687	A29687T	A	T	1	1	B.1.351	0.00003
noncoding	29687	A29687-	A	-	1	1	B.1.351	0.00003
noncoding	29687	A29687-	A	-	1	1	B.1.351.3	0.000876
noncoding	29687	A29687G	A	G	1	1	B.1.36	0.000146
noncoding	29687	A29687G	A	G	1	1	B.1.36.19	0.009259
noncoding	29687	A29687C	A	C	1	1	B.1.362	0.001541
noncoding	29687	A29687-	A	-	1	1	B.1.423	0.010204
noncoding	29687	A29687C	A	C	1	1	B.1.427	0.00005
noncoding	29687	A29687T	A	T	1	1	B.1.429	0.000024
noncoding	29687	A29687-	A	-	1	1	B.1.429	0.000024
noncoding	29687	A29687G	A	G	1	1	B.1.429	0.000024
noncoding	29687	A29687-	A	-	1	1	B.1.438.1	0.000107
noncoding	29687	A29687-	A	-	1	1	B.1.443	0.004673
noncoding	29687	A29687T	A	T	1	1	B.1.466.2	0.000391
noncoding	29687	A29687T	A	T	1	1	B.1.575	0.000303
noncoding	29687	A29687T	A	T	1	1	B.1.593	0.01087
noncoding	29687	A29687T	A	T	1	1	B.1.596	0.000087
noncoding	29687	A29687-	A	-	1	1	B.1.596	0.000087
noncoding	29687	A29687G	A	G	1	1	B.1.609	0.000479
noncoding	29687	A29687G	A	G	1	1	B.1.617.1	0.000129
noncoding	29687	A29687T	A	T	1	1	B.1.617.1	0.000129
noncoding	29687	A29687C	A	C	1	1	B.1.617.1	0.000129
noncoding	29687	A29687T	A	T	1	1	B.1.617.2	0.000004
noncoding	29687	A29687T	A	T	1	1	B.1.628	0.000352
noncoding	29687	A29687-	A	-	1	1	B.1.637	0.000073
noncoding	29687	A29687-	A	-	1	1	B.3.1	0.001658
noncoding	29687	A29687G	A	G	1	1	B.32	0.027027
noncoding	29687	A29687-	A	-	1	1	B.58	0.010204
noncoding	29687	A29687-	A	-	1	1	B.6	0.00091
noncoding	29687	A29687-	A	-	1	1	B.6.8	0.008264
noncoding	29687	A29687C	A	C	1	1	B.60	0.015873
noncoding	29687	A29687T	A	T	1	1	C.37	0.000116
noncoding	29687	A29687C	A	C	1	1	P.1.1	0.000318
noncoding	29687	A29687-	A	-	1	1	P.1.14	0.000048
noncoding	29687	A29687-	A	-	1	1	P.1.15	0.000232
noncoding	29687	A29687-	A	-	1	1	P.1.17	0.000162
noncoding	29687	A29687T	A	T	1	1	P.2	0.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.