CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29686 & Codon = -
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 29686 | C29686- | noncoding | C | - | 359 | 359 | 1 | 29686-29686 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 29686 | C29686- | C | - | 359 | 359 | All | 0.000069 |
| noncoding | 29686 | C29686- | C | - | 38 | 38 | AY.4 | 0.000059 |
| noncoding | 29686 | C29686- | C | - | 38 | 38 | B.1.1.7 | 0.000034 |
| noncoding | 29686 | C29686- | C | - | 32 | 32 | AY.103 | 0.000199 |
| noncoding | 29686 | C29686- | C | - | 28 | 28 | B.1.2 | 0.000247 |
| noncoding | 29686 | C29686- | C | - | 23 | 23 | B.1.617.2 | 0.000087 |
| noncoding | 29686 | C29686- | C | - | 17 | 17 | AY.47 | 0.000529 |
| noncoding | 29686 | C29686- | C | - | 16 | 16 | AY.25 | 0.000096 |
| noncoding | 29686 | C29686- | C | - | 15 | 15 | AY.44 | 0.000091 |
| noncoding | 29686 | C29686- | C | - | 11 | 11 | B.1 | 0.000101 |
| noncoding | 29686 | C29686- | C | - | 10 | 10 | B.1.177 | 0.000132 |
| noncoding | 29686 | C29686- | C | - | 8 | 8 | R.1 | 0.00072 |
| noncoding | 29686 | C29686- | C | - | 5 | 5 | AY.3 | 0.00005 |
| noncoding | 29686 | C29686- | C | - | 5 | 5 | AY.9.2 | 0.000184 |
| noncoding | 29686 | C29686- | C | - | 5 | 5 | B.1.1 | 0.000091 |
| noncoding | 29686 | C29686- | C | - | 5 | 5 | B.1.258 | 0.000333 |
| noncoding | 29686 | C29686- | C | - | 5 | 5 | B.1.429 | 0.000118 |
| noncoding | 29686 | C29686- | C | - | 4 | 4 | AY.43 | 0.000018 |
| noncoding | 29686 | C29686- | C | - | 4 | 4 | P.1 | 0.000063 |
| noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.29 | 0.000047 |
| noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.3.1 | 0.000256 |
| noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.46.4 | 0.000494 |
| noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.75 | 0.000168 |
| noncoding | 29686 | C29686- | C | - | 3 | 3 | B.1.1.194 | 0.014851 |
| noncoding | 29686 | C29686- | C | - | 3 | 3 | C.37 | 0.000348 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AD.2 | 0.000438 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.102 | 0.000053 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.39 | 0.000049 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.46.6 | 0.000144 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.5 | 0.000041 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.61 | 0.00021 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.62 | 0.000871 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.64 | 0.00119 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.1.416 | 0.00181 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.1.46 | 0.008734 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.160.33 | 0.00885 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.221 | 0.000142 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.36.29 | 0.001035 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.362 | 0.003082 |
| noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.596 | 0.000174 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | A.1 | 0.000282 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.117 | 0.000085 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.118 | 0.000063 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.20 | 0.000039 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.23 | 0.00007 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.33 | 0.000067 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.34 | 0.000097 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.4.2 | 0.000022 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.45 | 0.000122 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.46.1 | 0.001027 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.5.3 | 0.000337 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.65 | 0.000533 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.68 | 0.000274 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.72 | 0.001361 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.75.1 | 0.00018 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.89 | 0.004902 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.9.1 | 0.000084 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.91 | 0.00073 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B | 0.000128 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.197 | 0.037037 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.218 | 0.007692 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.269 | 0.001353 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.277 | 0.000759 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.37 | 0.000193 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.519 | 0.00004 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.70 | 0.000341 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.160 | 0.000031 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.160.14 | 0.002119 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.243 | 0.00007 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.258.16 | 0.001637 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.298 | 0.002114 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.351.3 | 0.000876 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.423 | 0.010204 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.438.1 | 0.000107 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.443 | 0.004673 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.621 | 0.000089 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.637 | 0.000073 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.3.1 | 0.001658 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | B.58 | 0.010204 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | P.1.15 | 0.000232 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | P.1.17 | 0.000162 |
| noncoding | 29686 | C29686- | C | - | 1 | 1 | P.1.2 | 0.001156 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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