CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29686 | C29686T | noncoding | C | T | 8836 | 8836 | 1 | 29686-29686 | |
noncoding | 29686 | C29686G | noncoding | C | G | 1317 | 1317 | 1 | 29686-29686 | |
noncoding | 29686 | C29686- | noncoding | C | - | 359 | 359 | 1 | 29686-29686 | |
noncoding | 29686 | C29686A | noncoding | C | A | 42 | 42 | 1 | 29686-29686 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29686 | C29686T | C | T | 8836 | 8836 | All | 0.00169 |
noncoding | 29686 | C29686T | C | T | 1575 | 1575 | B.1.1.7 | 0.00141 |
noncoding | 29686 | C29686G | C | G | 1317 | 1317 | All | 0.000252 |
noncoding | 29686 | C29686T | C | T | 1089 | 1089 | B.1.177.17 | 0.894089 |
noncoding | 29686 | C29686G | C | G | 908 | 908 | B.1.1.7 | 0.000813 |
noncoding | 29686 | C29686T | C | T | 546 | 546 | B.1.1 | 0.009905 |
noncoding | 29686 | C29686T | C | T | 512 | 512 | AY.44 | 0.003116 |
noncoding | 29686 | C29686T | C | T | 491 | 491 | AY.4 | 0.000764 |
noncoding | 29686 | C29686T | C | T | 484 | 484 | AY.33 | 0.032321 |
noncoding | 29686 | C29686G | C | G | 364 | 364 | AY.4 | 0.000567 |
noncoding | 29686 | C29686- | C | - | 359 | 359 | All | 0.000069 |
noncoding | 29686 | C29686T | C | T | 340 | 340 | AY.103 | 0.002111 |
noncoding | 29686 | C29686T | C | T | 279 | 279 | AY.43 | 0.001236 |
noncoding | 29686 | C29686T | C | T | 275 | 275 | B.1.617.2 | 0.001035 |
noncoding | 29686 | C29686T | C | T | 225 | 225 | A.21 | 0.623269 |
noncoding | 29686 | C29686T | C | T | 219 | 219 | AY.25 | 0.001317 |
noncoding | 29686 | C29686T | C | T | 192 | 192 | B.1.177 | 0.002528 |
noncoding | 29686 | C29686T | C | T | 173 | 173 | AY.29 | 0.002729 |
noncoding | 29686 | C29686T | C | T | 132 | 132 | B.1.526 | 0.003103 |
noncoding | 29686 | C29686T | C | T | 116 | 116 | B.1.177.81 | 0.021961 |
noncoding | 29686 | C29686T | C | T | 115 | 115 | AY.120 | 0.004276 |
noncoding | 29686 | C29686T | C | T | 109 | 109 | B.1.2 | 0.00096 |
noncoding | 29686 | C29686T | C | T | 101 | 101 | B.1 | 0.000925 |
noncoding | 29686 | C29686T | C | T | 71 | 71 | AY.102 | 0.001882 |
noncoding | 29686 | C29686T | C | T | 59 | 59 | AY.47 | 0.001835 |
noncoding | 29686 | C29686T | C | T | 52 | 52 | P.1.14 | 0.002486 |
noncoding | 29686 | C29686T | C | T | 52 | 52 | P.1.17 | 0.008412 |
noncoding | 29686 | C29686T | C | T | 48 | 48 | P.1 | 0.000756 |
noncoding | 29686 | C29686T | C | T | 46 | 46 | B.1.525 | 0.005205 |
noncoding | 29686 | C29686T | C | T | 45 | 45 | AY.3 | 0.000448 |
noncoding | 29686 | C29686T | C | T | 43 | 43 | B.1.438.4 | 0.914894 |
noncoding | 29686 | C29686A | C | A | 42 | 42 | All | 0.000008 |
noncoding | 29686 | C29686T | C | T | 42 | 42 | AY.6 | 0.001727 |
noncoding | 29686 | C29686T | C | T | 40 | 40 | B.1.429 | 0.000941 |
noncoding | 29686 | C29686- | C | - | 38 | 38 | AY.4 | 0.000059 |
noncoding | 29686 | C29686- | C | - | 38 | 38 | B.1.1.7 | 0.000034 |
noncoding | 29686 | C29686T | C | T | 38 | 38 | B.1.427 | 0.001919 |
noncoding | 29686 | C29686T | C | T | 34 | 34 | AY.4.2 | 0.000737 |
noncoding | 29686 | C29686T | C | T | 34 | 34 | B.1.400 | 0.014586 |
noncoding | 29686 | C29686- | C | - | 32 | 32 | AY.103 | 0.000199 |
noncoding | 29686 | C29686T | C | T | 32 | 32 | C.37 | 0.003714 |
noncoding | 29686 | C29686T | C | T | 29 | 29 | AY.46 | 0.003018 |
noncoding | 29686 | C29686T | C | T | 28 | 28 | B.1.177.38 | 0.291667 |
noncoding | 29686 | C29686- | C | - | 28 | 28 | B.1.2 | 0.000247 |
noncoding | 29686 | C29686T | C | T | 27 | 27 | B.1.69 | 0.964286 |
noncoding | 29686 | C29686T | C | T | 25 | 25 | AY.39 | 0.000618 |
noncoding | 29686 | C29686T | C | T | 25 | 25 | AY.5 | 0.000516 |
noncoding | 29686 | C29686T | C | T | 25 | 25 | B.1.351 | 0.000743 |
noncoding | 29686 | C29686T | C | T | 23 | 23 | B.1.160 | 0.000717 |
noncoding | 29686 | C29686- | C | - | 23 | 23 | B.1.617.2 | 0.000087 |
noncoding | 29686 | C29686T | C | T | 22 | 22 | AY.118 | 0.001378 |
noncoding | 29686 | C29686T | C | T | 22 | 22 | B.1.637 | 0.001608 |
noncoding | 29686 | C29686T | C | T | 22 | 22 | C.36.3 | 0.012479 |
noncoding | 29686 | C29686T | C | T | 20 | 20 | B.1.1.519 | 0.000794 |
noncoding | 29686 | C29686T | C | T | 19 | 19 | AY.94 | 0.008411 |
noncoding | 29686 | C29686T | C | T | 18 | 18 | AY.36 | 0.002668 |
noncoding | 29686 | C29686T | C | T | 18 | 18 | B.1.1.222 | 0.003672 |
noncoding | 29686 | C29686T | C | T | 18 | 18 | B.1.370 | 0.144 |
noncoding | 29686 | C29686T | C | T | 17 | 17 | AY.12 | 0.005373 |
noncoding | 29686 | C29686- | C | - | 17 | 17 | AY.47 | 0.000529 |
noncoding | 29686 | C29686T | C | T | 17 | 17 | P.1.1 | 0.0054 |
noncoding | 29686 | C29686- | C | - | 16 | 16 | AY.25 | 0.000096 |
noncoding | 29686 | C29686T | C | T | 16 | 16 | AY.26 | 0.000453 |
noncoding | 29686 | C29686T | C | T | 16 | 16 | AY.34 | 0.001551 |
noncoding | 29686 | C29686T | C | T | 16 | 16 | AY.73 | 0.010645 |
noncoding | 29686 | C29686T | C | T | 16 | 16 | B.1.1.317 | 0.006587 |
noncoding | 29686 | C29686T | C | T | 16 | 16 | B.1.258 | 0.001065 |
noncoding | 29686 | C29686A | C | A | 16 | 16 | B.1.526 | 0.000376 |
noncoding | 29686 | C29686T | C | T | 16 | 16 | B.1.621 | 0.001416 |
noncoding | 29686 | C29686- | C | - | 15 | 15 | AY.44 | 0.000091 |
noncoding | 29686 | C29686T | C | T | 14 | 14 | P.2 | 0.002613 |
noncoding | 29686 | C29686T | C | T | 13 | 13 | AY.100 | 0.000598 |
noncoding | 29686 | C29686T | C | T | 13 | 13 | AY.23 | 0.000907 |
noncoding | 29686 | C29686T | C | T | 13 | 13 | B.1.126 | 0.016582 |
noncoding | 29686 | C29686T | C | T | 13 | 13 | B.1.375 | 0.010656 |
noncoding | 29686 | C29686T | C | T | 12 | 12 | AY.117 | 0.001014 |
noncoding | 29686 | C29686T | C | T | 12 | 12 | AY.13 | 0.001932 |
noncoding | 29686 | C29686T | C | T | 12 | 12 | AY.39.1 | 0.000475 |
noncoding | 29686 | C29686T | C | T | 12 | 12 | B.1.1.214 | 0.000665 |
noncoding | 29686 | C29686T | C | T | 12 | 12 | B.1.1.28 | 0.003735 |
noncoding | 29686 | C29686T | C | T | 11 | 11 | AY.106 | 0.003684 |
noncoding | 29686 | C29686- | C | - | 11 | 11 | B.1 | 0.000101 |
noncoding | 29686 | C29686T | C | T | 11 | 11 | B.1.36 | 0.001605 |
noncoding | 29686 | C29686T | C | T | 11 | 11 | B.1.36.26 | 0.031429 |
noncoding | 29686 | C29686T | C | T | 11 | 11 | B.1.596 | 0.000959 |
noncoding | 29686 | C29686T | C | T | 10 | 10 | B.1.1.306 | 0.004384 |
noncoding | 29686 | C29686- | C | - | 10 | 10 | B.1.177 | 0.000132 |
noncoding | 29686 | C29686T | C | T | 10 | 10 | B.1.221 | 0.00071 |
noncoding | 29686 | C29686T | C | T | 10 | 10 | B.1.243 | 0.000696 |
noncoding | 29686 | C29686T | C | T | 10 | 10 | B.1.582 | 0.004907 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | AY.20 | 0.00035 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | AY.45 | 0.001095 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | AY.9.2 | 0.000331 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | B.1.1.298 | 0.007759 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | B.1.177.54 | 0.005458 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | B.1.617.1 | 0.001161 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | N.4 | 0.038298 |
noncoding | 29686 | C29686T | C | T | 9 | 9 | P.1.15 | 0.002091 |
noncoding | 29686 | C29686T | C | T | 8 | 8 | AY.61 | 0.000838 |
noncoding | 29686 | C29686T | C | T | 8 | 8 | AY.99.2 | 0.000737 |
noncoding | 29686 | C29686T | C | T | 8 | 8 | B | 0.001022 |
noncoding | 29686 | C29686T | C | T | 8 | 8 | B.1.466.2 | 0.00313 |
noncoding | 29686 | C29686G | C | G | 8 | 8 | B.1.617.2 | 0.00003 |
noncoding | 29686 | C29686G | C | G | 8 | 8 | Q.8 | 0.001319 |
noncoding | 29686 | C29686- | C | - | 8 | 8 | R.1 | 0.00072 |
noncoding | 29686 | C29686T | C | T | 7 | 7 | AY.116 | 0.002007 |
noncoding | 29686 | C29686T | C | T | 7 | 7 | AY.75 | 0.000392 |
noncoding | 29686 | C29686T | C | T | 7 | 7 | B.1.438.1 | 0.000751 |
noncoding | 29686 | C29686T | C | T | 6 | 6 | A | 0.002322 |
noncoding | 29686 | C29686T | C | T | 6 | 6 | A.2.5 | 0.002994 |
noncoding | 29686 | C29686T | C | T | 6 | 6 | AY.46.5 | 0.00119 |
noncoding | 29686 | C29686T | C | T | 6 | 6 | AY.59 | 0.003178 |
noncoding | 29686 | C29686T | C | T | 6 | 6 | B.40 | 0.002186 |
noncoding | 29686 | C29686T | C | T | 6 | 6 | D.2 | 0.00045 |
noncoding | 29686 | C29686T | C | T | 6 | 6 | Q.8 | 0.000989 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.113 | 0.000712 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.119 | 0.000177 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.28 | 0.009452 |
noncoding | 29686 | C29686- | C | - | 5 | 5 | AY.3 | 0.00005 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.4.2.1 | 0.000745 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.42 | 0.000201 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.5.3 | 0.001687 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.74 | 0.000578 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | AY.75.1 | 0.000902 |
noncoding | 29686 | C29686- | C | - | 5 | 5 | AY.9.2 | 0.000184 |
noncoding | 29686 | C29686- | C | - | 5 | 5 | B.1.1 | 0.000091 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | B.1.1.216 | 0.004452 |
noncoding | 29686 | C29686A | C | A | 5 | 5 | B.1.1.519 | 0.000199 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | B.1.1.523 | 0.007812 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | B.1.177.60 | 0.001092 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | B.1.240 | 0.001078 |
noncoding | 29686 | C29686- | C | - | 5 | 5 | B.1.258 | 0.000333 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | B.1.258.3 | 0.008375 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | B.1.416.1 | 0.007812 |
noncoding | 29686 | C29686- | C | - | 5 | 5 | B.1.429 | 0.000118 |
noncoding | 29686 | C29686T | C | T | 5 | 5 | B.1.438 | 0.03268 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | A.19 | 0.037736 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.111 | 0.000733 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.121 | 0.000541 |
noncoding | 29686 | C29686G | C | G | 4 | 4 | AY.25 | 0.000024 |
noncoding | 29686 | C29686- | C | - | 4 | 4 | AY.43 | 0.000018 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.5.4 | 0.001107 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.51 | 0.003636 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.85 | 0.001709 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.89 | 0.019608 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.9 | 0.00027 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | AY.98 | 0.000316 |
noncoding | 29686 | C29686A | C | A | 4 | 4 | B.1 | 0.000037 |
noncoding | 29686 | C29686G | C | G | 4 | 4 | B.1 | 0.000037 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | B.1.1.170 | 0.004988 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | B.1.1.316 | 0.0037 |
noncoding | 29686 | C29686A | C | A | 4 | 4 | B.1.1.7 | 0.000004 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | B.1.36.16 | 0.005698 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | B.1.36.29 | 0.002069 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | B.1.564 | 0.001704 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | B.1.628 | 0.001409 |
noncoding | 29686 | C29686- | C | - | 4 | 4 | P.1 | 0.000063 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | P.1.16 | 0.001496 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | P.1.7 | 0.001277 |
noncoding | 29686 | C29686T | C | T | 4 | 4 | Q.3 | 0.00058 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | A.23.1 | 0.002113 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | AU.2 | 0.007264 |
noncoding | 29686 | C29686G | C | G | 3 | 3 | AY.102 | 0.00008 |
noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.29 | 0.000047 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | AY.29.1 | 0.000662 |
noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.46.4 | 0.000494 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | AY.69 | 0.00056 |
noncoding | 29686 | C29686- | C | - | 3 | 3 | AY.75 | 0.000168 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | AY.98.1 | 0.000145 |
noncoding | 29686 | C29686G | C | G | 3 | 3 | B.1.1 | 0.000054 |
noncoding | 29686 | C29686- | C | - | 3 | 3 | B.1.1.194 | 0.014851 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.1.265 | 0.009464 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.1.416 | 0.002715 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.1.70 | 0.001023 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.177.21 | 0.000229 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.177.43 | 0.004431 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.214.3 | 0.021429 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.234 | 0.000396 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.36.38 | 0.004926 |
noncoding | 29686 | C29686T | C | T | 3 | 3 | B.1.502 | 0.157895 |
noncoding | 29686 | C29686- | C | - | 3 | 3 | C.37 | 0.000348 |
noncoding | 29686 | C29686A | C | A | 2 | 2 | A.1 | 0.000564 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AD.2 | 0.000438 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.102 | 0.000053 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.114 | 0.000462 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.116.1 | 0.000623 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.120.2 | 0.002571 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.2 | 0.000712 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.21 | 0.003795 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.24 | 0.000862 |
noncoding | 29686 | C29686A | C | A | 2 | 2 | AY.3 | 0.00002 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.32 | 0.001065 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.39 | 0.000049 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.4.5 | 0.000215 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.46.6 | 0.000144 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.5 | 0.000041 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.52 | 0.001629 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.53 | 0.000575 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.61 | 0.00021 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.62 | 0.000871 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | AY.64 | 0.00119 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.7 | 0.000392 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.7.1 | 0.000225 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.9.1 | 0.000167 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | AY.92 | 0.000575 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.1 | 0.000653 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.118 | 0.020408 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.153 | 0.002191 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.158 | 0.02439 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.25 | 0.001137 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.269 | 0.002706 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.284 | 0.000215 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.311 | 0.000716 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.1.416 | 0.00181 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.1.46 | 0.008734 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.1.50 | 0.001358 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.110.3 | 0.001437 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.160.26 | 0.004843 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.160.33 | 0.00885 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.177.75 | 0.002081 |
noncoding | 29686 | C29686G | C | G | 2 | 2 | B.1.177.81 | 0.000379 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.210 | 0.004264 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.214.2 | 0.001199 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 29686 | C29686A | C | A | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.267 | 0.037037 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.293 | 0.025 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.349 | 0.00143 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.36.1 | 0.002281 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.36.29 | 0.001035 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.362 | 0.003082 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.437 | 0.041667 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.470 | 0.002809 |
noncoding | 29686 | C29686G | C | G | 2 | 2 | B.1.470 | 0.002809 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.480 | 0.004975 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.509 | 0.001732 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.575 | 0.000607 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.576 | 0.001813 |
noncoding | 29686 | C29686- | C | - | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | B.1.619 | 0.001742 |
noncoding | 29686 | C29686T | C | T | 2 | 2 | P.5 | 0.027397 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | A.2.2 | 0.001689 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | A.2.5.3 | 0.010309 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | A.27 | 0.001656 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AU.1 | 0.001266 |
noncoding | 29686 | C29686A | C | A | 1 | 1 | AY.1 | 0.000396 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.104 | 0.001984 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.110 | 0.000113 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.118 | 0.000063 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.14 | 0.000088 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.16.1 | 0.00047 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.23 | 0.00007 |
noncoding | 29686 | C29686A | C | A | 1 | 1 | AY.25 | 0.000006 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.27 | 0.000065 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | AY.34 | 0.000097 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.37 | 0.000316 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.38 | 0.000499 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.39.1.1 | 0.000725 |
noncoding | 29686 | C29686A | C | A | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.4.3 | 0.000842 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.41 | 0.000294 |
noncoding | 29686 | C29686A | C | A | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | AY.44 | 0.000006 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.45 | 0.000122 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.46.1 | 0.001027 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.46.2 | 0.000635 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.49 | 0.003195 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.57 | 0.000656 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.64 | 0.000595 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.65 | 0.000533 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.68 | 0.000274 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.72 | 0.001361 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.78 | 0.001541 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.79 | 0.001211 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.80 | 0.001129 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.82 | 0.001357 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.84 | 0.000437 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.89 | 0.004902 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.90 | 0.000684 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.91 | 0.00073 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | AY.95 | 0.000761 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B | 0.000128 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | B | 0.000128 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.121 | 0.002427 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.144 | 0.028571 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.174 | 0.003378 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.196 | 0.005714 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.197 | 0.037037 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.220 | 0.001859 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.226 | 0.005814 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.277 | 0.000759 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.290 | 0.018182 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.291 | 0.000742 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.294 | 0.001266 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.304 | 0.002809 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.333 | 0.001076 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.348 | 0.000796 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.372 | 0.000689 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.389 | 0.006061 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.391 | 0.008547 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.412 | 0.007634 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.420 | 0.001006 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.44 | 0.00241 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.448 | 0.002033 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.46 | 0.004367 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.462 | 0.008621 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.519 | 0.00004 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.521 | 0.005348 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.1.525 | 0.005464 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.1.70 | 0.000341 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.117 | 0.0125 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.128 | 0.000635 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.147 | 0.000756 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.160.14 | 0.002119 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.160.18 | 0.007299 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.160.9 | 0.007194 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.10 | 0.000878 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.16 | 0.000664 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.29 | 0.066667 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.4 | 0.000211 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.45 | 0.000381 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.55 | 0.002331 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.61 | 0.043478 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.77 | 0.000726 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.177.9 | 0.001332 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.192 | 0.009259 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.237 | 0.004975 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.260 | 0.003344 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.265 | 0.001271 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.338 | 0.008621 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.351.3 | 0.000876 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.36.10 | 0.004785 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.361 | 0.001289 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.371 | 0.001122 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.398 | 0.002976 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.411 | 0.003704 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.423 | 0.010204 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.443 | 0.004673 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.471 | 0.002732 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.501 | 0.007353 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.533 | 0.009615 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.549 | 0.007194 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.550 | 0.013699 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.588 | 0.00091 |
noncoding | 29686 | C29686A | C | A | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 29686 | C29686A | C | A | 1 | 1 | B.1.617.2 | 0.000004 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.621.1 | 0.000506 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.623 | 0.000536 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.631 | 0.003367 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.1.9 | 0.006173 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.3.1 | 0.001658 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | B.58 | 0.010204 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | B.6.6 | 0.000889 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | C.16 | 0.00106 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | C.37 | 0.000116 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | L.1 | 0.001905 |
noncoding | 29686 | C29686G | C | G | 1 | 1 | P.1 | 0.000016 |
noncoding | 29686 | C29686A | C | A | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 29686 | C29686- | C | - | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | P.7 | 0.004367 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | Q.7 | 0.001111 |
noncoding | 29686 | C29686T | C | T | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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