CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29557 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29557G29557TnoncodingGT1781517815129557-29557

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29557G29557TGT1781517815All0.003407
noncoding29557G29557TGT74987498B.1.617.20.028233
noncoding29557G29557TGT55945594AY.430.024784
noncoding29557G29557TGT10591059B.1.160.160.984201
noncoding29557G29557TGT534534AY.390.013196
noncoding29557G29557TGT344344AY.440.002094
noncoding29557G29557TGT287287AY.40.000447
noncoding29557G29557TGT198198AY.1020.00525
noncoding29557G29557TGT182182B.1.1.70.000163
noncoding29557G29557TGT170170B.1.36.10.193843
noncoding29557G29557TGT125125AY.1030.000776
noncoding29557G29557TGT112112B.10.001026
noncoding29557G29557TGT111111AB.10.909836
noncoding29557G29557TGT105105AY.460.010928
noncoding29557G29557TGT9696AY.200.003731
noncoding29557G29557TGT8686B.1.1770.001132
noncoding29557G29557TGT6262AY.1190.002189
noncoding29557G29557TGT6060AY.5.30.020243
noncoding29557G29557TGT6060B.1.1600.001871
noncoding29557G29557TGT5050AY.330.003339
noncoding29557G29557TGT4949AY.320.026092
noncoding29557G29557TGT4949B.1.20.000431
noncoding29557G29557TGT4141AY.1110.007509
noncoding29557G29557TGT4141AY.5.40.011345
noncoding29557G29557TGT3535AY.46.60.002527
noncoding29557G29557TGT3131AY.250.000186
noncoding29557G29557TGT3030AY.30.000298
noncoding29557G29557TGT3030B.1.2210.002131
noncoding29557G29557TGT2727AY.90.001825
noncoding29557G29557TGT2525B.1.10.000454
noncoding29557G29557TGT2424B.1.177.310.275862
noncoding29557G29557TGT2222AY.980.001738
noncoding29557G29557TGT2121AY.4.20.000455
noncoding29557G29557TGT2121AY.50.000434
noncoding29557G29557TGT2121B.1.177.440.010898
noncoding29557G29557TGT2020AY.230.001395
noncoding29557G29557TGT2020AY.9.20.000735
noncoding29557G29557TGT1919AY.1170.001606
noncoding29557G29557TGT1919AY.410.005585
noncoding29557G29557TGT1717AY.770.019166
noncoding29557G29557TGT1515AY.420.000603
noncoding29557G29557TGT1515AY.7.10.001691
noncoding29557G29557TGT1414AY.1210.001894
noncoding29557G29557TGT1414AY.840.006124
noncoding29557G29557TGT1414AY.920.004022
noncoding29557G29557TGT1313AY.1130.001851
noncoding29557G29557TGT1313AY.340.001261
noncoding29557G29557TGT1313B.1.4080.04797
noncoding29557G29557TGT1212AY.990.012592
noncoding29557G29557TGT1111AY.450.001339
noncoding29557G29557TGT1111AY.46.10.011294
noncoding29557G29557TGT1111P.10.000173
noncoding29557G29557TGT99AY.1060.003014
noncoding29557G29557TGT99AY.1160.002581
noncoding29557G29557TGT99AY.590.004767
noncoding29557G29557TGT99B.1.4970.002833
noncoding29557G29557TGT88AY.1000.000368
noncoding29557G29557TGT88AY.98.10.000387
noncoding29557G29557TGT88B.1.3510.000238
noncoding29557G29557TGT77AY.1140.001618
noncoding29557G29557TGT77AY.470.000218
noncoding29557G29557TGT77AY.680.001916
noncoding29557G29557TGT77AY.750.000392
noncoding29557G29557TGT66AY.260.00017
noncoding29557G29557TGT66AY.670.002786
noncoding29557G29557TGT66B.1.1490.020548
noncoding29557G29557TGT66B.1.160.140.012712
noncoding29557G29557TGT66B.1.4000.002574
noncoding29557G29557TGT66B.1.617.10.000774
noncoding29557G29557TGT55AY.34.10.00255
noncoding29557G29557TGT55AY.530.001438
noncoding29557G29557TGT55AY.580.004537
noncoding29557G29557TGT55AY.890.02451
noncoding29557G29557TGT55AY.950.003805
noncoding29557G29557TGT55B.1.4220.004062
noncoding29557G29557TGT44AY.100.00212
noncoding29557G29557TGT44AY.1100.000451
noncoding29557G29557TGT44AY.1180.000251
noncoding29557G29557TGT44AY.140.000352
noncoding29557G29557TGT44AY.520.003257
noncoding29557G29557TGT44AY.610.000419
noncoding29557G29557TGT44AY.640.002381
noncoding29557G29557TGT44AY.860.00332
noncoding29557G29557TGT44B.1.1.2790.004484
noncoding29557G29557TGT44B.1.177.820.001909
noncoding29557G29557TGT33AY.1200.000112
noncoding29557G29557TGT33AY.190.003421
noncoding29557G29557TGT33AY.46.20.001906
noncoding29557G29557TGT33AY.60.000123
noncoding29557G29557TGT33AY.7.20.001678
noncoding29557G29557TGT33AY.720.004082
noncoding29557G29557TGT33B0.000383
noncoding29557G29557TGT33B.1.1.2220.000612
noncoding29557G29557TGT33B.1.1.3060.001315
noncoding29557G29557TGT33B.1.360.000438
noncoding29557G29557TGT33B.1.4730.057692
noncoding29557G29557TGT22AY.1050.001286
noncoding29557G29557TGT22AY.1080.002205
noncoding29557G29557TGT22AY.1090.001479
noncoding29557G29557TGT22AY.120.10.000642
noncoding29557G29557TGT22AY.130.000322
noncoding29557G29557TGT22AY.210.003795
noncoding29557G29557TGT22AY.290.000032
noncoding29557G29557TGT22AY.29.10.000441
noncoding29557G29557TGT22AY.4.40.000818
noncoding29557G29557TGT22AY.560.00321
noncoding29557G29557TGT22AY.620.000871
noncoding29557G29557TGT22AY.75.10.000361
noncoding29557G29557TGT22AY.870.001665
noncoding29557G29557TGT22B.1.1.280.000622
noncoding29557G29557TGT22B.1.1.390.001019
noncoding29557G29557TGT22B.1.1.4200.002012
noncoding29557G29557TGT22B.1.1.5230.003125
noncoding29557G29557TGT22B.1.177.210.000153
noncoding29557G29557TGT22B.1.177.530.004785
noncoding29557G29557TGT22B.1.177.600.000437
noncoding29557G29557TGT22B.1.2400.000431
noncoding29557G29557TGT22B.1.2430.000139
noncoding29557G29557TGT22B.1.2600.006689
noncoding29557G29557TGT22B.1.36.330.015152
noncoding29557G29557TGT22B.1.5400.019417
noncoding29557G29557TGT22B.1.5950.000522
noncoding29557G29557TGT22B.1.5960.000174
noncoding29557G29557TGT22B.1.6210.000177
noncoding29557G29557TGT22B.1.6370.000146
noncoding29557G29557TGT22C.40.02
noncoding29557G29557TGT22P.1.20.002312
noncoding29557G29557TGT22P.1.70.000639
noncoding29557G29557TGT22P.20.000373
noncoding29557G29557TGT11A0.000387
noncoding29557G29557TGT11A.10.000282
noncoding29557G29557TGT11A.23.10.000704
noncoding29557G29557TGT11A.30.002096
noncoding29557G29557TGT11AY.10.000396
noncoding29557G29557TGT11AY.1040.001984
noncoding29557G29557TGT11AY.110.001339
noncoding29557G29557TGT11AY.270.000065
noncoding29557G29557TGT11AY.350.000233
noncoding29557G29557TGT11AY.360.000148
noncoding29557G29557TGT11AY.370.000316
noncoding29557G29557TGT11AY.39.10.00004
noncoding29557G29557TGT11AY.4.30.000842
noncoding29557G29557TGT11AY.4.50.000107
noncoding29557G29557TGT11AY.600.000938
noncoding29557G29557TGT11AY.660.00107
noncoding29557G29557TGT11AY.70.000196
noncoding29557G29557TGT11AY.700.000209
noncoding29557G29557TGT11AY.740.000116
noncoding29557G29557TGT11AY.80.000606
noncoding29557G29557TGT11AY.880.000884
noncoding29557G29557TGT11AY.9.10.000084
noncoding29557G29557TGT11AY.910.00073
noncoding29557G29557TGT11AY.960.002075
noncoding29557G29557TGT11AY.970.001701
noncoding29557G29557TGT11AY.99.20.000092
noncoding29557G29557TGT11B.1.1.10.000327
noncoding29557G29557TGT11B.1.1.100.001115
noncoding29557G29557TGT11B.1.1.1410.002012
noncoding29557G29557TGT11B.1.1.1590.004673
noncoding29557G29557TGT11B.1.1.2160.00089
noncoding29557G29557TGT11B.1.1.2310.003096
noncoding29557G29557TGT11B.1.1.250.000569
noncoding29557G29557TGT11B.1.1.2630.001558
noncoding29557G29557TGT11B.1.1.2720.005208
noncoding29557G29557TGT11B.1.1.3120.001912
noncoding29557G29557TGT11B.1.1.3400.045455
noncoding29557G29557TGT11B.1.1.3430.020833
noncoding29557G29557TGT11B.1.1.3490.010309
noncoding29557G29557TGT11B.1.1.4060.006494
noncoding29557G29557TGT11B.1.1.470.005348
noncoding29557G29557TGT11B.1.1.5190.00004
noncoding29557G29557TGT11B.1.1.700.000341
noncoding29557G29557TGT11B.1.160.300.002976
noncoding29557G29557TGT11B.1.177.40.000211
noncoding29557G29557TGT11B.1.177.670.007634
noncoding29557G29557TGT11B.1.177.750.001041
noncoding29557G29557TGT11B.1.2340.000132
noncoding29557G29557TGT11B.1.2980.002114
noncoding29557G29557TGT11B.1.36.220.001208
noncoding29557G29557TGT11B.1.3620.001541
noncoding29557G29557TGT11B.1.3890.001002
noncoding29557G29557TGT11B.1.3910.001127
noncoding29557G29557TGT11B.1.4090.000781
noncoding29557G29557TGT11B.1.4230.010204
noncoding29557G29557TGT11B.1.4280.00102
noncoding29557G29557TGT11B.1.4290.000024
noncoding29557G29557TGT11B.1.4330.003195
noncoding29557G29557TGT11B.1.4500.011364
noncoding29557G29557TGT11B.1.4700.001404
noncoding29557G29557TGT11B.1.5260.000024
noncoding29557G29557TGT11B.1.5610.000397
noncoding29557G29557TGT11B.1.5670.003333
noncoding29557G29557TGT11B.1.5750.000303
noncoding29557G29557TGT11B.1.5760.000907
noncoding29557G29557TGT11B.60.00091
noncoding29557G29557TGT11C.370.000116
noncoding29557G29557TGT11P.1.10.000318
noncoding29557G29557TGT11P.1.150.000232
noncoding29557G29557TGT11Q.10.000126
noncoding29557G29557TGT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.