CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 29555 | C29555T | noncoding | C | T | 19433 | 19433 | 1 | 29555-29555 | |
noncoding | 29555 | C29555- | noncoding | C | - | 108 | 108 | 1 | 29555-29555 | |
noncoding | 29555 | C29555A | noncoding | C | A | 34 | 34 | 1 | 29555-29555 | |
noncoding | 29555 | C29555G | noncoding | C | G | 12 | 12 | 1 | 29555-29555 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 29555 | C29555T | C | T | 19433 | 19433 | All | 0.003717 |
noncoding | 29555 | C29555T | C | T | 2977 | 2977 | B.1.1.7 | 0.002665 |
noncoding | 29555 | C29555T | C | T | 2312 | 2312 | B.1.36.18 | 0.971429 |
noncoding | 29555 | C29555T | C | T | 1961 | 1961 | B.1.36.17 | 0.968874 |
noncoding | 29555 | C29555T | C | T | 1416 | 1416 | AY.25 | 0.008517 |
noncoding | 29555 | C29555T | C | T | 1017 | 1017 | AY.4 | 0.001583 |
noncoding | 29555 | C29555T | C | T | 604 | 604 | AY.23 | 0.042129 |
noncoding | 29555 | C29555T | C | T | 564 | 564 | AY.44 | 0.003433 |
noncoding | 29555 | C29555T | C | T | 552 | 552 | B.1.177 | 0.007269 |
noncoding | 29555 | C29555T | C | T | 546 | 546 | B.1.617.2 | 0.002056 |
noncoding | 29555 | C29555T | C | T | 516 | 516 | AY.43 | 0.002286 |
noncoding | 29555 | C29555T | C | T | 436 | 436 | B.1.36.39 | 0.966741 |
noncoding | 29555 | C29555T | C | T | 414 | 414 | AY.3 | 0.004118 |
noncoding | 29555 | C29555T | C | T | 391 | 391 | AY.20 | 0.015196 |
noncoding | 29555 | C29555T | C | T | 353 | 353 | B.1 | 0.003233 |
noncoding | 29555 | C29555T | C | T | 340 | 340 | B.1.2 | 0.002994 |
noncoding | 29555 | C29555T | C | T | 273 | 273 | B.1.160 | 0.008514 |
noncoding | 29555 | C29555T | C | T | 225 | 225 | B.1.258.17 | 0.023394 |
noncoding | 29555 | C29555T | C | T | 216 | 216 | AY.5 | 0.00446 |
noncoding | 29555 | C29555T | C | T | 207 | 207 | B.1.91 | 0.429461 |
noncoding | 29555 | C29555T | C | T | 188 | 188 | AY.39 | 0.004646 |
noncoding | 29555 | C29555T | C | T | 160 | 160 | B.1.1 | 0.002903 |
noncoding | 29555 | C29555T | C | T | 149 | 149 | P.1 | 0.002347 |
noncoding | 29555 | C29555T | C | T | 141 | 141 | B.1.544 | 0.849398 |
noncoding | 29555 | C29555T | C | T | 138 | 138 | AY.6 | 0.005676 |
noncoding | 29555 | C29555T | C | T | 137 | 137 | B.1.596 | 0.011938 |
noncoding | 29555 | C29555T | C | T | 122 | 122 | AY.120 | 0.004536 |
noncoding | 29555 | C29555T | C | T | 119 | 119 | AY.103 | 0.000739 |
noncoding | 29555 | C29555T | C | T | 117 | 117 | B.1.1.306 | 0.051293 |
noncoding | 29555 | C29555T | C | T | 114 | 114 | B.1.427 | 0.005757 |
noncoding | 29555 | C29555T | C | T | 112 | 112 | AY.102 | 0.00297 |
noncoding | 29555 | C29555- | C | - | 108 | 108 | All | 0.000021 |
noncoding | 29555 | C29555T | C | T | 98 | 98 | B.1.422 | 0.07961 |
noncoding | 29555 | C29555T | C | T | 93 | 93 | AY.29.1 | 0.020507 |
noncoding | 29555 | C29555T | C | T | 83 | 83 | AY.100 | 0.003819 |
noncoding | 29555 | C29555T | C | T | 74 | 74 | B.1.526 | 0.001739 |
noncoding | 29555 | C29555T | C | T | 72 | 72 | AY.4.2 | 0.001562 |
noncoding | 29555 | C29555T | C | T | 71 | 71 | AY.14 | 0.006249 |
noncoding | 29555 | C29555T | C | T | 69 | 69 | B.1.429 | 0.001623 |
noncoding | 29555 | C29555T | C | T | 66 | 66 | B.1.1.519 | 0.002621 |
noncoding | 29555 | C29555T | C | T | 56 | 56 | B.1.243 | 0.003897 |
noncoding | 29555 | C29555T | C | T | 54 | 54 | B.1.621 | 0.00478 |
noncoding | 29555 | C29555T | C | T | 53 | 53 | P.1.10 | 0.014282 |
noncoding | 29555 | C29555T | C | T | 52 | 52 | B.1.128 | 0.033037 |
noncoding | 29555 | C29555T | C | T | 47 | 47 | B.1.1.486 | 0.074132 |
noncoding | 29555 | C29555T | C | T | 46 | 46 | AY.26 | 0.001302 |
noncoding | 29555 | C29555T | C | T | 45 | 45 | B.1.466.2 | 0.017606 |
noncoding | 29555 | C29555T | C | T | 44 | 44 | B.1.351 | 0.001308 |
noncoding | 29555 | C29555T | C | T | 41 | 41 | P.1.14 | 0.00196 |
noncoding | 29555 | C29555T | C | T | 39 | 39 | AY.118 | 0.002443 |
noncoding | 29555 | C29555A | C | A | 34 | 34 | All | 0.000007 |
noncoding | 29555 | C29555T | C | T | 33 | 33 | AY.29 | 0.000521 |
noncoding | 29555 | C29555T | C | T | 31 | 31 | Q.8 | 0.005112 |
noncoding | 29555 | C29555T | C | T | 30 | 30 | AY.46.6 | 0.002166 |
noncoding | 29555 | C29555T | C | T | 29 | 29 | B.1.1.291 | 0.021529 |
noncoding | 29555 | C29555T | C | T | 28 | 28 | AY.119 | 0.000989 |
noncoding | 29555 | C29555T | C | T | 28 | 28 | R.1 | 0.00252 |
noncoding | 29555 | C29555T | C | T | 26 | 26 | AY.105 | 0.01672 |
noncoding | 29555 | C29555T | C | T | 25 | 25 | P.1.17 | 0.004044 |
noncoding | 29555 | C29555T | C | T | 24 | 24 | AY.1 | 0.009497 |
noncoding | 29555 | C29555T | C | T | 23 | 23 | B.1.177.4 | 0.004854 |
noncoding | 29555 | C29555T | C | T | 21 | 21 | AY.47 | 0.000653 |
noncoding | 29555 | C29555T | C | T | 21 | 21 | C.37 | 0.002437 |
noncoding | 29555 | C29555T | C | T | 21 | 21 | P.1.1 | 0.006671 |
noncoding | 29555 | C29555T | C | T | 19 | 19 | AY.61 | 0.001991 |
noncoding | 29555 | C29555T | C | T | 19 | 19 | B.1.36.27 | 0.014504 |
noncoding | 29555 | C29555T | C | T | 18 | 18 | AY.46.4 | 0.002961 |
noncoding | 29555 | C29555T | C | T | 18 | 18 | B.1.177.7 | 0.002967 |
noncoding | 29555 | C29555T | C | T | 18 | 18 | B.1.609 | 0.008629 |
noncoding | 29555 | C29555T | C | T | 17 | 17 | AY.12 | 0.005373 |
noncoding | 29555 | C29555T | C | T | 17 | 17 | B.1.1.311 | 0.006089 |
noncoding | 29555 | C29555T | C | T | 17 | 17 | B.1.1.33 | 0.007155 |
noncoding | 29555 | C29555T | C | T | 16 | 16 | AY.4.4 | 0.006547 |
noncoding | 29555 | C29555T | C | T | 16 | 16 | AY.4.5 | 0.00172 |
noncoding | 29555 | C29555T | C | T | 16 | 16 | B.1.1.289 | 0.033333 |
noncoding | 29555 | C29555T | C | T | 16 | 16 | B.1.258 | 0.001065 |
noncoding | 29555 | C29555T | C | T | 16 | 16 | B.1.617.1 | 0.002063 |
noncoding | 29555 | C29555- | C | - | 13 | 13 | AY.4 | 0.00002 |
noncoding | 29555 | C29555T | C | T | 13 | 13 | AY.74 | 0.001503 |
noncoding | 29555 | C29555T | C | T | 13 | 13 | B.1.1.25 | 0.007391 |
noncoding | 29555 | C29555T | C | T | 13 | 13 | B.1.499 | 0.013655 |
noncoding | 29555 | C29555T | C | T | 13 | 13 | P.2 | 0.002426 |
noncoding | 29555 | C29555G | C | G | 12 | 12 | All | 0.000002 |
noncoding | 29555 | C29555T | C | T | 12 | 12 | AY.116 | 0.003441 |
noncoding | 29555 | C29555T | C | T | 12 | 12 | AY.9 | 0.000811 |
noncoding | 29555 | C29555T | C | T | 12 | 12 | B.1.1.39 | 0.006116 |
noncoding | 29555 | C29555T | C | T | 12 | 12 | B.1.177.28 | 0.088889 |
noncoding | 29555 | C29555T | C | T | 11 | 11 | AY.42 | 0.000443 |
noncoding | 29555 | C29555T | C | T | 11 | 11 | AY.75 | 0.000616 |
noncoding | 29555 | C29555T | C | T | 11 | 11 | AY.98 | 0.000869 |
noncoding | 29555 | C29555T | C | T | 11 | 11 | B.1.448 | 0.028871 |
noncoding | 29555 | C29555T | C | T | 11 | 11 | P.1.15 | 0.002556 |
noncoding | 29555 | C29555T | C | T | 10 | 10 | AY.46.2 | 0.006353 |
noncoding | 29555 | C29555T | C | T | 10 | 10 | AY.92 | 0.002873 |
noncoding | 29555 | C29555T | C | T | 10 | 10 | B.1.1.269 | 0.013532 |
noncoding | 29555 | C29555T | C | T | 10 | 10 | B.1.1.70 | 0.003411 |
noncoding | 29555 | C29555T | C | T | 10 | 10 | B.1.576 | 0.009066 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | AY.16.1 | 0.004229 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | AY.19 | 0.010262 |
noncoding | 29555 | C29555- | C | - | 9 | 9 | AY.25 | 0.000054 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | AY.46 | 0.000937 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | AY.9.2 | 0.000331 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | B | 0.00115 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | B.1.1.28 | 0.002801 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | B.1.1.317 | 0.003705 |
noncoding | 29555 | C29555- | C | - | 9 | 9 | B.1.1.7 | 0.000008 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | B.1.221 | 0.000639 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | B.1.369 | 0.002567 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | B.1.637 | 0.000658 |
noncoding | 29555 | C29555T | C | T | 9 | 9 | D.2 | 0.000675 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | AT.1 | 0.041026 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | AY.33 | 0.000534 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | AY.39.1 | 0.000317 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | AY.45 | 0.000973 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | AY.5.4 | 0.002214 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | AY.7 | 0.001568 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | AY.99.2 | 0.000737 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | B.1.1.216 | 0.007124 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | B.1.1.434 | 0.002788 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | B.1.177.5 | 0.009938 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | B.1.234 | 0.001056 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | B.1.36 | 0.001167 |
noncoding | 29555 | C29555T | C | T | 8 | 8 | B.1.438.1 | 0.000858 |
noncoding | 29555 | C29555T | C | T | 7 | 7 | AY.121 | 0.000947 |
noncoding | 29555 | C29555T | C | T | 7 | 7 | AY.54 | 0.000667 |
noncoding | 29555 | C29555T | C | T | 7 | 7 | AY.59 | 0.003708 |
noncoding | 29555 | C29555T | C | T | 7 | 7 | AY.75.1 | 0.001262 |
noncoding | 29555 | C29555T | C | T | 7 | 7 | B.1.177.21 | 0.000535 |
noncoding | 29555 | C29555- | C | - | 7 | 7 | B.1.258 | 0.000466 |
noncoding | 29555 | C29555- | C | - | 7 | 7 | B.1.617.2 | 0.000026 |
noncoding | 29555 | C29555T | C | T | 7 | 7 | P.1.6 | 0.013619 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | AY.36 | 0.000889 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | AY.98.1 | 0.000291 |
noncoding | 29555 | C29555- | C | - | 6 | 6 | B.1 | 0.000055 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | B.1.1.385 | 0.026786 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | B.1.1.428 | 0.056604 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | B.1.1.523 | 0.009375 |
noncoding | 29555 | C29555A | C | A | 6 | 6 | B.1.1.7 | 0.000005 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | B.1.177.12 | 0.00091 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | B.1.36.29 | 0.003104 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | B.1.582 | 0.002944 |
noncoding | 29555 | C29555T | C | T | 6 | 6 | B.1.595 | 0.001566 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.101 | 0.002452 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.107 | 0.00233 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.109 | 0.003698 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.113 | 0.000712 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.114 | 0.001156 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.116.1 | 0.001557 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.117 | 0.000423 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.4.2.1 | 0.000745 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.5.3 | 0.001687 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.9.1 | 0.000419 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.91 | 0.003652 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | AY.95 | 0.003805 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | B.1.1.27 | 0.028249 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | B.1.1.348 | 0.003981 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | B.1.177.33 | 0.008224 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | B.1.36.10 | 0.023923 |
noncoding | 29555 | C29555T | C | T | 5 | 5 | B.1.577 | 0.003436 |
noncoding | 29555 | C29555A | C | A | 5 | 5 | B.1.617.2 | 0.000019 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | AY.111 | 0.000733 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | AY.27 | 0.000259 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | AY.30 | 0.001583 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | AY.37 | 0.001264 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | AY.7.1 | 0.000451 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | AY.7.2 | 0.002237 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | AY.85 | 0.001709 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.1.1 | 0.001307 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.1.222 | 0.000816 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.1.254 | 0.044944 |
noncoding | 29555 | C29555- | C | - | 4 | 4 | B.1.1.306 | 0.001754 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.1.50 | 0.002716 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.232 | 0.002149 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.240 | 0.000862 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.416 | 0.005076 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.523 | 0.009804 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | B.1.619 | 0.003484 |
noncoding | 29555 | C29555T | C | T | 4 | 4 | Q.3 | 0.00058 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | A.21 | 0.00831 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.110 | 0.000338 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.16 | 0.001139 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.23.1 | 0.001252 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.24 | 0.001293 |
noncoding | 29555 | C29555A | C | A | 3 | 3 | AY.3 | 0.00003 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.3.1 | 0.000256 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.38 | 0.001498 |
noncoding | 29555 | C29555- | C | - | 3 | 3 | AY.43 | 0.000013 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.46.5 | 0.000595 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.60 | 0.002814 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AY.62 | 0.001307 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | AZ.3 | 0.004559 |
noncoding | 29555 | C29555A | C | A | 3 | 3 | B.1 | 0.000027 |
noncoding | 29555 | C29555- | C | - | 3 | 3 | B.1.1 | 0.000054 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.1.10 | 0.003344 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.1.214 | 0.000166 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.1.402 | 0.033333 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.1.54 | 0.009063 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.1.57 | 0.034483 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.177.73 | 0.001699 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.214.2 | 0.001799 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.236 | 0.00616 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.260 | 0.010033 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.324 | 0.004815 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.36.8 | 0.003 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.367 | 0.002377 |
noncoding | 29555 | C29555G | C | G | 3 | 3 | B.1.448 | 0.007874 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.1.468 | 0.017143 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | B.6 | 0.00273 |
noncoding | 29555 | C29555- | C | - | 3 | 3 | P.1 | 0.000047 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | P.1.17.1 | 0.002625 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | Q.1 | 0.000379 |
noncoding | 29555 | C29555T | C | T | 3 | 3 | Q.4 | 0.001364 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | A.1 | 0.000564 |
noncoding | 29555 | C29555A | C | A | 2 | 2 | AY.100 | 0.000092 |
noncoding | 29555 | C29555A | C | A | 2 | 2 | AY.103 | 0.000012 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.108 | 0.002205 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.13 | 0.000322 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.28 | 0.003781 |
noncoding | 29555 | C29555- | C | - | 2 | 2 | AY.3 | 0.00002 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.32 | 0.001065 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.35 | 0.000466 |
noncoding | 29555 | C29555- | C | - | 2 | 2 | AY.44 | 0.000012 |
noncoding | 29555 | C29555- | C | - | 2 | 2 | AY.47 | 0.000062 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.53 | 0.000575 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.55 | 0.001835 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.58 | 0.001815 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.65 | 0.001066 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.87 | 0.001665 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | AY.88 | 0.001768 |
noncoding | 29555 | C29555- | C | - | 2 | 2 | AY.98 | 0.000158 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.1.101 | 0.02 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.1.111 | 0.029412 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.1.153 | 0.002191 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.1.192 | 0.004619 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.1.334 | 0.032787 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.1.485 | 0.033333 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.1.95 | 0.039216 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.111 | 0.00235 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.13 | 0.004751 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.139 | 0.001466 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.147 | 0.001512 |
noncoding | 29555 | C29555- | C | - | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.177.82 | 0.000955 |
noncoding | 29555 | C29555- | C | - | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.264 | 0.024691 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.265 | 0.002541 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.298 | 0.004228 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.311 | 0.000549 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.313 | 0.013158 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.349 | 0.00143 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.351.1 | 0.076923 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.351.2 | 0.000605 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.404 | 0.002604 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.456 | 0.006536 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 29555 | C29555- | C | - | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.538 | 0.016129 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.551 | 0.002581 |
noncoding | 29555 | C29555A | C | A | 2 | 2 | B.1.556 | 0.015038 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.580 | 0.00813 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.1.635 | 0.035088 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | B.3 | 0.001661 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | C.26 | 0.014706 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | C.35 | 0.001548 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | C.36 | 0.001821 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | C.36.1 | 0.008299 |
noncoding | 29555 | C29555A | C | A | 2 | 2 | C.37 | 0.000232 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | P.1.16 | 0.000748 |
noncoding | 29555 | C29555T | C | T | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | A | 0.000387 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | A.2.5 | 0.000499 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | A.23.1 | 0.000704 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AD.2 | 0.000219 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AH.3 | 0.003802 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.10 | 0.00053 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | AY.102 | 0.000027 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.104 | 0.001984 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.106 | 0.000335 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.120.2.1 | 0.000498 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.13 | 0.000161 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.15 | 0.002222 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | AY.20 | 0.000039 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.21 | 0.001898 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.29 | 0.000016 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.38 | 0.000499 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.39.1.1 | 0.000725 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | AY.4 | 0.000002 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | AY.4 | 0.000002 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.4.3 | 0.000842 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.40 | 0.000964 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | AY.42 | 0.00004 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.5 | 0.000021 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.56 | 0.001605 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | AY.61 | 0.000105 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.64 | 0.000595 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.65 | 0.000533 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.67 | 0.000464 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.70 | 0.000209 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.71 | 0.000475 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.72 | 0.001361 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.77 | 0.001127 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.78 | 0.001541 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.79 | 0.001211 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.84 | 0.000437 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.93 | 0.000273 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AY.94 | 0.000443 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | AY.98 | 0.000079 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | AY.99 | 0.001049 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | B.1 | 0.000009 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.129 | 0.009174 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.161 | 0.003534 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.176 | 0.000439 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.231 | 0.003096 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.265 | 0.003155 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.267 | 0.010101 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.273 | 0.006757 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.279 | 0.001121 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.284 | 0.000107 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.301 | 0.001179 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.351 | 0.002793 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.352 | 0.03125 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.354 | 0.004386 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.369 | 0.000446 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.397 | 0.002252 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.398 | 0.003226 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.1.420 | 0.001006 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | B.1.1.464 | 0.001473 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.507 | 0.008696 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.1.521 | 0.005348 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.110.3 | 0.000718 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.126 | 0.001276 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.160.15 | 0.00495 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.166 | 0.008475 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | B.1.177 | 0.000013 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.177 | 0.000013 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.11 | 0.001698 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.16 | 0.000664 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.18 | 0.00116 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.20 | 0.001517 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.31 | 0.011494 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.32 | 0.00135 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.43 | 0.001477 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.53 | 0.002392 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.56 | 0.000668 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.57 | 0.000281 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.59 | 0.016129 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.65 | 0.000665 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.177.83 | 0.001481 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.177.85 | 0.005435 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | B.1.2 | 0.000009 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | B.1.221 | 0.000071 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.229 | 0.009709 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.239 | 0.001221 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.241 | 0.000812 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.258.11 | 0.000396 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.258.14 | 0.00098 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.258.16 | 0.001637 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.258.2 | 0.004505 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.258.3 | 0.001675 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.258.4 | 0.003448 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.279 | 0.000514 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.305 | 0.002151 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | B.1.333 | 0.010526 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.336 | 0.002439 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.356 | 0.001727 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.36.12 | 0.009615 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.362 | 0.001541 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.389 | 0.001002 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.400 | 0.000429 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.415 | 0.014286 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.416.1 | 0.001563 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.424 | 0.008065 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.459 | 0.004082 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | B.1.459 | 0.004082 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.474 | 0.001901 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.490 | 0.1 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.503 | 0.002488 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.527 | 0.003704 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.564 | 0.000426 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.565 | 0.00081 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.571 | 0.009709 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.575.1 | 0.002439 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.588 | 0.00091 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.590 | 0.004545 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.596.1 | 0.009346 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.619.1 | 0.000641 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.620 | 0.000946 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.623 | 0.000536 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.625 | 0.002353 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.1.631 | 0.003367 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.31 | 0.003731 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | B.4 | 0.002208 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | C.1 | 0.002392 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | C.16 | 0.00106 |
noncoding | 29555 | C29555A | C | A | 1 | 1 | C.36 | 0.000911 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | C.37 | 0.000116 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | C.37.1 | 0.002618 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | D.5 | 0.004975 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | N.4 | 0.004255 |
noncoding | 29555 | C29555G | C | G | 1 | 1 | P.1 | 0.000016 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | P.4 | 0.003802 |
noncoding | 29555 | C29555T | C | T | 1 | 1 | Q.2 | 0.000613 |
noncoding | 29555 | C29555- | C | - | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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