CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29555

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29555C29555TnoncodingCT1943319433129555-29555
noncoding29555C29555-noncodingC-108108129555-29555
noncoding29555C29555AnoncodingCA3434129555-29555
noncoding29555C29555GnoncodingCG1212129555-29555

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29555C29555TCT1943319433All0.003717
noncoding29555C29555TCT29772977B.1.1.70.002665
noncoding29555C29555TCT23122312B.1.36.180.971429
noncoding29555C29555TCT19611961B.1.36.170.968874
noncoding29555C29555TCT14161416AY.250.008517
noncoding29555C29555TCT10171017AY.40.001583
noncoding29555C29555TCT604604AY.230.042129
noncoding29555C29555TCT564564AY.440.003433
noncoding29555C29555TCT552552B.1.1770.007269
noncoding29555C29555TCT546546B.1.617.20.002056
noncoding29555C29555TCT516516AY.430.002286
noncoding29555C29555TCT436436B.1.36.390.966741
noncoding29555C29555TCT414414AY.30.004118
noncoding29555C29555TCT391391AY.200.015196
noncoding29555C29555TCT353353B.10.003233
noncoding29555C29555TCT340340B.1.20.002994
noncoding29555C29555TCT273273B.1.1600.008514
noncoding29555C29555TCT225225B.1.258.170.023394
noncoding29555C29555TCT216216AY.50.00446
noncoding29555C29555TCT207207B.1.910.429461
noncoding29555C29555TCT188188AY.390.004646
noncoding29555C29555TCT160160B.1.10.002903
noncoding29555C29555TCT149149P.10.002347
noncoding29555C29555TCT141141B.1.5440.849398
noncoding29555C29555TCT138138AY.60.005676
noncoding29555C29555TCT137137B.1.5960.011938
noncoding29555C29555TCT122122AY.1200.004536
noncoding29555C29555TCT119119AY.1030.000739
noncoding29555C29555TCT117117B.1.1.3060.051293
noncoding29555C29555TCT114114B.1.4270.005757
noncoding29555C29555TCT112112AY.1020.00297
noncoding29555C29555-C-108108All0.000021
noncoding29555C29555TCT9898B.1.4220.07961
noncoding29555C29555TCT9393AY.29.10.020507
noncoding29555C29555TCT8383AY.1000.003819
noncoding29555C29555TCT7474B.1.5260.001739
noncoding29555C29555TCT7272AY.4.20.001562
noncoding29555C29555TCT7171AY.140.006249
noncoding29555C29555TCT6969B.1.4290.001623
noncoding29555C29555TCT6666B.1.1.5190.002621
noncoding29555C29555TCT5656B.1.2430.003897
noncoding29555C29555TCT5454B.1.6210.00478
noncoding29555C29555TCT5353P.1.100.014282
noncoding29555C29555TCT5252B.1.1280.033037
noncoding29555C29555TCT4747B.1.1.4860.074132
noncoding29555C29555TCT4646AY.260.001302
noncoding29555C29555TCT4545B.1.466.20.017606
noncoding29555C29555TCT4444B.1.3510.001308
noncoding29555C29555TCT4141P.1.140.00196
noncoding29555C29555TCT3939AY.1180.002443
noncoding29555C29555ACA3434All0.000007
noncoding29555C29555TCT3333AY.290.000521
noncoding29555C29555TCT3131Q.80.005112
noncoding29555C29555TCT3030AY.46.60.002166
noncoding29555C29555TCT2929B.1.1.2910.021529
noncoding29555C29555TCT2828AY.1190.000989
noncoding29555C29555TCT2828R.10.00252
noncoding29555C29555TCT2626AY.1050.01672
noncoding29555C29555TCT2525P.1.170.004044
noncoding29555C29555TCT2424AY.10.009497
noncoding29555C29555TCT2323B.1.177.40.004854
noncoding29555C29555TCT2121AY.470.000653
noncoding29555C29555TCT2121C.370.002437
noncoding29555C29555TCT2121P.1.10.006671
noncoding29555C29555TCT1919AY.610.001991
noncoding29555C29555TCT1919B.1.36.270.014504
noncoding29555C29555TCT1818AY.46.40.002961
noncoding29555C29555TCT1818B.1.177.70.002967
noncoding29555C29555TCT1818B.1.6090.008629
noncoding29555C29555TCT1717AY.120.005373
noncoding29555C29555TCT1717B.1.1.3110.006089
noncoding29555C29555TCT1717B.1.1.330.007155
noncoding29555C29555TCT1616AY.4.40.006547
noncoding29555C29555TCT1616AY.4.50.00172
noncoding29555C29555TCT1616B.1.1.2890.033333
noncoding29555C29555TCT1616B.1.2580.001065
noncoding29555C29555TCT1616B.1.617.10.002063
noncoding29555C29555-C-1313AY.40.00002
noncoding29555C29555TCT1313AY.740.001503
noncoding29555C29555TCT1313B.1.1.250.007391
noncoding29555C29555TCT1313B.1.4990.013655
noncoding29555C29555TCT1313P.20.002426
noncoding29555C29555GCG1212All0.000002
noncoding29555C29555TCT1212AY.1160.003441
noncoding29555C29555TCT1212AY.90.000811
noncoding29555C29555TCT1212B.1.1.390.006116
noncoding29555C29555TCT1212B.1.177.280.088889
noncoding29555C29555TCT1111AY.420.000443
noncoding29555C29555TCT1111AY.750.000616
noncoding29555C29555TCT1111AY.980.000869
noncoding29555C29555TCT1111B.1.4480.028871
noncoding29555C29555TCT1111P.1.150.002556
noncoding29555C29555TCT1010AY.46.20.006353
noncoding29555C29555TCT1010AY.920.002873
noncoding29555C29555TCT1010B.1.1.2690.013532
noncoding29555C29555TCT1010B.1.1.700.003411
noncoding29555C29555TCT1010B.1.5760.009066
noncoding29555C29555TCT99AY.16.10.004229
noncoding29555C29555TCT99AY.190.010262
noncoding29555C29555-C-99AY.250.000054
noncoding29555C29555TCT99AY.460.000937
noncoding29555C29555TCT99AY.9.20.000331
noncoding29555C29555TCT99B0.00115
noncoding29555C29555TCT99B.1.1.280.002801
noncoding29555C29555TCT99B.1.1.3170.003705
noncoding29555C29555-C-99B.1.1.70.000008
noncoding29555C29555TCT99B.1.2210.000639
noncoding29555C29555TCT99B.1.3690.002567
noncoding29555C29555TCT99B.1.6370.000658
noncoding29555C29555TCT99D.20.000675
noncoding29555C29555TCT88AT.10.041026
noncoding29555C29555TCT88AY.330.000534
noncoding29555C29555TCT88AY.39.10.000317
noncoding29555C29555TCT88AY.450.000973
noncoding29555C29555TCT88AY.5.40.002214
noncoding29555C29555TCT88AY.70.001568
noncoding29555C29555TCT88AY.99.20.000737
noncoding29555C29555TCT88B.1.1.2160.007124
noncoding29555C29555TCT88B.1.1.4340.002788
noncoding29555C29555TCT88B.1.177.50.009938
noncoding29555C29555TCT88B.1.2340.001056
noncoding29555C29555TCT88B.1.360.001167
noncoding29555C29555TCT88B.1.438.10.000858
noncoding29555C29555TCT77AY.1210.000947
noncoding29555C29555TCT77AY.540.000667
noncoding29555C29555TCT77AY.590.003708
noncoding29555C29555TCT77AY.75.10.001262
noncoding29555C29555TCT77B.1.177.210.000535
noncoding29555C29555-C-77B.1.2580.000466
noncoding29555C29555-C-77B.1.617.20.000026
noncoding29555C29555TCT77P.1.60.013619
noncoding29555C29555TCT66AY.360.000889
noncoding29555C29555TCT66AY.98.10.000291
noncoding29555C29555-C-66B.10.000055
noncoding29555C29555TCT66B.1.1.3850.026786
noncoding29555C29555TCT66B.1.1.4280.056604
noncoding29555C29555TCT66B.1.1.5230.009375
noncoding29555C29555ACA66B.1.1.70.000005
noncoding29555C29555TCT66B.1.177.120.00091
noncoding29555C29555TCT66B.1.36.290.003104
noncoding29555C29555TCT66B.1.5820.002944
noncoding29555C29555TCT66B.1.5950.001566
noncoding29555C29555TCT55AY.1010.002452
noncoding29555C29555TCT55AY.1070.00233
noncoding29555C29555TCT55AY.1090.003698
noncoding29555C29555TCT55AY.1130.000712
noncoding29555C29555TCT55AY.1140.001156
noncoding29555C29555TCT55AY.116.10.001557
noncoding29555C29555TCT55AY.1170.000423
noncoding29555C29555TCT55AY.4.2.10.000745
noncoding29555C29555TCT55AY.5.30.001687
noncoding29555C29555TCT55AY.9.10.000419
noncoding29555C29555TCT55AY.910.003652
noncoding29555C29555TCT55AY.950.003805
noncoding29555C29555TCT55B.1.1.270.028249
noncoding29555C29555TCT55B.1.1.3480.003981
noncoding29555C29555TCT55B.1.177.330.008224
noncoding29555C29555TCT55B.1.36.100.023923
noncoding29555C29555TCT55B.1.5770.003436
noncoding29555C29555ACA55B.1.617.20.000019
noncoding29555C29555TCT44AY.1110.000733
noncoding29555C29555TCT44AY.270.000259
noncoding29555C29555TCT44AY.300.001583
noncoding29555C29555TCT44AY.370.001264
noncoding29555C29555TCT44AY.7.10.000451
noncoding29555C29555TCT44AY.7.20.002237
noncoding29555C29555TCT44AY.850.001709
noncoding29555C29555TCT44B.1.1.10.001307
noncoding29555C29555TCT44B.1.1.2220.000816
noncoding29555C29555TCT44B.1.1.2540.044944
noncoding29555C29555-C-44B.1.1.3060.001754
noncoding29555C29555TCT44B.1.1.500.002716
noncoding29555C29555TCT44B.1.2320.002149
noncoding29555C29555TCT44B.1.2400.000862
noncoding29555C29555TCT44B.1.4160.005076
noncoding29555C29555TCT44B.1.5230.009804
noncoding29555C29555TCT44B.1.6190.003484
noncoding29555C29555TCT44Q.30.00058
noncoding29555C29555TCT33A.210.00831
noncoding29555C29555TCT33AY.1100.000338
noncoding29555C29555TCT33AY.160.001139
noncoding29555C29555TCT33AY.23.10.001252
noncoding29555C29555TCT33AY.240.001293
noncoding29555C29555ACA33AY.30.00003
noncoding29555C29555TCT33AY.3.10.000256
noncoding29555C29555TCT33AY.380.001498
noncoding29555C29555-C-33AY.430.000013
noncoding29555C29555TCT33AY.46.50.000595
noncoding29555C29555TCT33AY.600.002814
noncoding29555C29555TCT33AY.620.001307
noncoding29555C29555TCT33AZ.30.004559
noncoding29555C29555ACA33B.10.000027
noncoding29555C29555-C-33B.1.10.000054
noncoding29555C29555TCT33B.1.1.100.003344
noncoding29555C29555TCT33B.1.1.2140.000166
noncoding29555C29555TCT33B.1.1.4020.033333
noncoding29555C29555TCT33B.1.1.540.009063
noncoding29555C29555TCT33B.1.1.570.034483
noncoding29555C29555TCT33B.1.177.730.001699
noncoding29555C29555TCT33B.1.214.20.001799
noncoding29555C29555TCT33B.1.2360.00616
noncoding29555C29555TCT33B.1.2600.010033
noncoding29555C29555TCT33B.1.3240.004815
noncoding29555C29555TCT33B.1.36.80.003
noncoding29555C29555TCT33B.1.3670.002377
noncoding29555C29555GCG33B.1.4480.007874
noncoding29555C29555TCT33B.1.4680.017143
noncoding29555C29555TCT33B.60.00273
noncoding29555C29555-C-33P.10.000047
noncoding29555C29555TCT33P.1.17.10.002625
noncoding29555C29555TCT33Q.10.000379
noncoding29555C29555TCT33Q.40.001364
noncoding29555C29555TCT22A.10.000564
noncoding29555C29555ACA22AY.1000.000092
noncoding29555C29555ACA22AY.1030.000012
noncoding29555C29555TCT22AY.1080.002205
noncoding29555C29555TCT22AY.130.000322
noncoding29555C29555TCT22AY.280.003781
noncoding29555C29555-C-22AY.30.00002
noncoding29555C29555TCT22AY.320.001065
noncoding29555C29555TCT22AY.350.000466
noncoding29555C29555-C-22AY.440.000012
noncoding29555C29555-C-22AY.470.000062
noncoding29555C29555TCT22AY.530.000575
noncoding29555C29555TCT22AY.550.001835
noncoding29555C29555TCT22AY.580.001815
noncoding29555C29555TCT22AY.650.001066
noncoding29555C29555TCT22AY.870.001665
noncoding29555C29555TCT22AY.880.001768
noncoding29555C29555-C-22AY.980.000158
noncoding29555C29555TCT22B.1.1.1010.02
noncoding29555C29555TCT22B.1.1.1110.029412
noncoding29555C29555TCT22B.1.1.1530.002191
noncoding29555C29555TCT22B.1.1.1920.004619
noncoding29555C29555TCT22B.1.1.3340.032787
noncoding29555C29555TCT22B.1.1.4850.033333
noncoding29555C29555TCT22B.1.1.950.039216
noncoding29555C29555TCT22B.1.1110.00235
noncoding29555C29555TCT22B.1.130.004751
noncoding29555C29555TCT22B.1.1390.001466
noncoding29555C29555TCT22B.1.1470.001512
noncoding29555C29555-C-22B.1.1600.000062
noncoding29555C29555TCT22B.1.177.820.000955
noncoding29555C29555-C-22B.1.20.000018
noncoding29555C29555TCT22B.1.2640.024691
noncoding29555C29555TCT22B.1.2650.002541
noncoding29555C29555TCT22B.1.2980.004228
noncoding29555C29555TCT22B.1.3110.000549
noncoding29555C29555TCT22B.1.3130.013158
noncoding29555C29555TCT22B.1.3490.00143
noncoding29555C29555TCT22B.1.351.10.076923
noncoding29555C29555TCT22B.1.351.20.000605
noncoding29555C29555TCT22B.1.4040.002604
noncoding29555C29555TCT22B.1.4560.006536
noncoding29555C29555TCT22B.1.5250.000226
noncoding29555C29555-C-22B.1.5250.000226
noncoding29555C29555TCT22B.1.5380.016129
noncoding29555C29555TCT22B.1.5510.002581
noncoding29555C29555ACA22B.1.5560.015038
noncoding29555C29555TCT22B.1.5800.00813
noncoding29555C29555TCT22B.1.6350.035088
noncoding29555C29555TCT22B.30.001661
noncoding29555C29555TCT22C.260.014706
noncoding29555C29555TCT22C.350.001548
noncoding29555C29555TCT22C.360.001821
noncoding29555C29555TCT22C.36.10.008299
noncoding29555C29555ACA22C.370.000232
noncoding29555C29555TCT22P.1.160.000748
noncoding29555C29555TCT22P.1.70.000639
noncoding29555C29555TCT11A0.000387
noncoding29555C29555TCT11A.2.50.000499
noncoding29555C29555TCT11A.23.10.000704
noncoding29555C29555-C-11AD.20.000219
noncoding29555C29555TCT11AH.30.003802
noncoding29555C29555TCT11AY.100.00053
noncoding29555C29555GCG11AY.1020.000027
noncoding29555C29555ACA11AY.1020.000027
noncoding29555C29555TCT11AY.1040.001984
noncoding29555C29555TCT11AY.1060.000335
noncoding29555C29555-C-11AY.1170.000085
noncoding29555C29555TCT11AY.120.10.000321
noncoding29555C29555TCT11AY.120.2.10.000498
noncoding29555C29555-C-11AY.130.000161
noncoding29555C29555TCT11AY.150.002222
noncoding29555C29555GCG11AY.200.000039
noncoding29555C29555TCT11AY.210.001898
noncoding29555C29555-C-11AY.260.000028
noncoding29555C29555-C-11AY.290.000016
noncoding29555C29555TCT11AY.34.10.00051
noncoding29555C29555GCG11AY.34.10.00051
noncoding29555C29555-C-11AY.380.000499
noncoding29555C29555-C-11AY.39.10.00004
noncoding29555C29555TCT11AY.39.1.10.000725
noncoding29555C29555GCG11AY.40.000002
noncoding29555C29555ACA11AY.40.000002
noncoding29555C29555-C-11AY.4.20.000022
noncoding29555C29555TCT11AY.4.30.000842
noncoding29555C29555TCT11AY.400.000964
noncoding29555C29555GCG11AY.420.00004
noncoding29555C29555-C-11AY.46.60.000072
noncoding29555C29555-C-11AY.50.000021
noncoding29555C29555-C-11AY.5.30.000337
noncoding29555C29555TCT11AY.560.001605
noncoding29555C29555ACA11AY.610.000105
noncoding29555C29555-C-11AY.620.000436
noncoding29555C29555TCT11AY.640.000595
noncoding29555C29555-C-11AY.650.000533
noncoding29555C29555TCT11AY.670.000464
noncoding29555C29555TCT11AY.700.000209
noncoding29555C29555TCT11AY.710.000475
noncoding29555C29555TCT11AY.720.001361
noncoding29555C29555TCT11AY.770.001127
noncoding29555C29555TCT11AY.780.001541
noncoding29555C29555TCT11AY.790.001211
noncoding29555C29555TCT11AY.840.000437
noncoding29555C29555-C-11AY.9.10.000084
noncoding29555C29555TCT11AY.930.000273
noncoding29555C29555TCT11AY.940.000443
noncoding29555C29555ACA11AY.980.000079
noncoding29555C29555-C-11AY.98.10.000048
noncoding29555C29555-C-11AY.990.001049
noncoding29555C29555TCT11AZ.20.000821
noncoding29555C29555GCG11B.10.000009
noncoding29555C29555TCT11B.1.1.1290.009174
noncoding29555C29555TCT11B.1.1.1610.003534
noncoding29555C29555TCT11B.1.1.1760.000439
noncoding29555C29555TCT11B.1.1.2310.003096
noncoding29555C29555TCT11B.1.1.2650.003155
noncoding29555C29555TCT11B.1.1.2670.010101
noncoding29555C29555TCT11B.1.1.2730.006757
noncoding29555C29555TCT11B.1.1.2790.001121
noncoding29555C29555TCT11B.1.1.2840.000107
noncoding29555C29555TCT11B.1.1.3010.001179
noncoding29555C29555TCT11B.1.1.3180.000302
noncoding29555C29555TCT11B.1.1.3510.002793
noncoding29555C29555TCT11B.1.1.3520.03125
noncoding29555C29555TCT11B.1.1.3540.004386
noncoding29555C29555TCT11B.1.1.3690.000446
noncoding29555C29555-C-11B.1.1.370.000193
noncoding29555C29555TCT11B.1.1.3970.002252
noncoding29555C29555TCT11B.1.1.3980.003226
noncoding29555C29555TCT11B.1.1.4090.002833
noncoding29555C29555-C-11B.1.1.4200.001006
noncoding29555C29555ACA11B.1.1.4640.001473
noncoding29555C29555TCT11B.1.1.5070.008696
noncoding29555C29555TCT11B.1.1.5210.005348
noncoding29555C29555TCT11B.1.110.30.000718
noncoding29555C29555TCT11B.1.1260.001276
noncoding29555C29555TCT11B.1.160.150.00495
noncoding29555C29555TCT11B.1.1660.008475
noncoding29555C29555GCG11B.1.1770.000013
noncoding29555C29555-C-11B.1.1770.000013
noncoding29555C29555TCT11B.1.177.110.001698
noncoding29555C29555TCT11B.1.177.160.000664
noncoding29555C29555TCT11B.1.177.180.00116
noncoding29555C29555TCT11B.1.177.200.001517
noncoding29555C29555TCT11B.1.177.310.011494
noncoding29555C29555TCT11B.1.177.320.00135
noncoding29555C29555TCT11B.1.177.430.001477
noncoding29555C29555TCT11B.1.177.530.002392
noncoding29555C29555TCT11B.1.177.560.000668
noncoding29555C29555TCT11B.1.177.570.000281
noncoding29555C29555TCT11B.1.177.590.016129
noncoding29555C29555TCT11B.1.177.630.002703
noncoding29555C29555TCT11B.1.177.650.000665
noncoding29555C29555TCT11B.1.177.810.000189
noncoding29555C29555-C-11B.1.177.830.001481
noncoding29555C29555TCT11B.1.177.850.005435
noncoding29555C29555ACA11B.1.20.000009
noncoding29555C29555TCT11B.1.2100.002132
noncoding29555C29555ACA11B.1.2210.000071
noncoding29555C29555TCT11B.1.2290.009709
noncoding29555C29555TCT11B.1.2390.001221
noncoding29555C29555TCT11B.1.2410.000812
noncoding29555C29555TCT11B.1.258.110.000396
noncoding29555C29555TCT11B.1.258.140.00098
noncoding29555C29555-C-11B.1.258.160.001637
noncoding29555C29555TCT11B.1.258.20.004505
noncoding29555C29555TCT11B.1.258.30.001675
noncoding29555C29555TCT11B.1.258.40.003448
noncoding29555C29555TCT11B.1.2790.000514
noncoding29555C29555TCT11B.1.3050.002151
noncoding29555C29555GCG11B.1.3330.010526
noncoding29555C29555TCT11B.1.3360.002439
noncoding29555C29555TCT11B.1.3560.001727
noncoding29555C29555TCT11B.1.36.120.009615
noncoding29555C29555TCT11B.1.36.310.001751
noncoding29555C29555TCT11B.1.3620.001541
noncoding29555C29555TCT11B.1.3890.001002
noncoding29555C29555-C-11B.1.3960.000706
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noncoding29555C29555TCT11B.1.4000.000429
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noncoding29555C29555TCT11B.1.416.10.001563
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noncoding29555C29555TCT11B.1.4740.001901
noncoding29555C29555TCT11B.1.4900.1
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noncoding29555C29555-C-11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.