CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29550 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29550C29550TnoncodingCT14701470129550-29550

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29550C29550TCT14701470All0.000281
noncoding29550C29550TCT307307B.1.1.70.000275
noncoding29550C29550TCT287287B.1.617.20.001081
noncoding29550C29550TCT124124B.10.001136
noncoding29550C29550TCT105105AY.40.000163
noncoding29550C29550TCT7777AY.440.000469
noncoding29550C29550TCT7171AY.920.020396
noncoding29550C29550TCT6262P.10.000977
noncoding29550C29550TCT5757B.1.5630.966102
noncoding29550C29550TCT5050AY.290.000789
noncoding29550C29550TCT4040AY.1020.001061
noncoding29550C29550TCT3232AY.1030.000199
noncoding29550C29550TCT3232B.1.3750.02623
noncoding29550C29550TCT2424AY.430.000106
noncoding29550C29550TCT1212B.1.10.000218
noncoding29550C29550TCT1010AY.250.00006
noncoding29550C29550TCT1010AY.390.000247
noncoding29550C29550TCT99AY.130.001449
noncoding29550C29550TCT77AY.470.000218
noncoding29550C29550TCT66AY.340.000582
noncoding29550C29550TCT66B.1.20.000053
noncoding29550C29550TCT55AY.260.000142
noncoding29550C29550TCT55AY.50.000103
noncoding29550C29550TCT55AY.560.008026
noncoding29550C29550TCT55P.1.140.000239
noncoding29550C29550TCT44AY.200.000155
noncoding29550C29550TCT44AY.4.20.000087
noncoding29550C29550TCT44B.1.1.1010.04
noncoding29550C29550TCT44B.1.5260.000094
noncoding29550C29550TCT33AY.1170.000254
noncoding29550C29550TCT33AY.1180.000188
noncoding29550C29550TCT33AY.120.2.10.001495
noncoding29550C29550TCT33AY.330.0002
noncoding29550C29550TCT33AY.46.20.001906
noncoding29550C29550TCT33AY.980.000237
noncoding29550C29550TCT33B.1.1770.00004
noncoding29550C29550TCT33B.1.2580.0002
noncoding29550C29550TCT33B.1.4290.000071
noncoding29550C29550TCT33P.1.70.000958
noncoding29550C29550TCT22AY.1000.000092
noncoding29550C29550TCT22AY.1190.000071
noncoding29550C29550TCT22AY.230.000139
noncoding29550C29550TCT22AY.29.10.000441
noncoding29550C29550TCT22AY.30.00002
noncoding29550C29550TCT22AY.370.000632
noncoding29550C29550TCT22AY.5.30.000675
noncoding29550C29550TCT22AY.7.10.000225
noncoding29550C29550TCT22B.1.1.700.000682
noncoding29550C29550TCT22B.1.2320.001075
noncoding29550C29550TCT22B.1.3510.000059
noncoding29550C29550TCT22B.1.360.000292
noncoding29550C29550TCT22B.1.36.100.009569
noncoding29550C29550TCT22B.1.4270.000101
noncoding29550C29550TCT22B.1.6210.000177
noncoding29550C29550TCT11AY.100.00053
noncoding29550C29550TCT11AY.1110.000183
noncoding29550C29550TCT11AY.1130.000142
noncoding29550C29550TCT11AY.1140.000231
noncoding29550C29550TCT11AY.1160.000287
noncoding29550C29550TCT11AY.1200.000037
noncoding29550C29550TCT11AY.1210.000135
noncoding29550C29550TCT11AY.160.00038
noncoding29550C29550TCT11AY.320.000532
noncoding29550C29550TCT11AY.34.10.00051
noncoding29550C29550TCT11AY.420.00004
noncoding29550C29550TCT11AY.450.000122
noncoding29550C29550TCT11AY.46.30.000934
noncoding29550C29550TCT11AY.46.40.000165
noncoding29550C29550TCT11AY.520.000814
noncoding29550C29550TCT11AY.610.000105
noncoding29550C29550TCT11AY.640.000595
noncoding29550C29550TCT11AY.650.000533
noncoding29550C29550TCT11AY.750.000056
noncoding29550C29550TCT11AY.790.001211
noncoding29550C29550TCT11AY.910.00073
noncoding29550C29550TCT11B.1.1.1170.009709
noncoding29550C29550TCT11B.1.1.1590.004673
noncoding29550C29550TCT11B.1.1.2090.008929
noncoding29550C29550TCT11B.1.1.2220.000204
noncoding29550C29550TCT11B.1.1.2840.000107
noncoding29550C29550TCT11B.1.1.50.008333
noncoding29550C29550TCT11B.1.177.60.000977
noncoding29550C29550TCT11B.1.177.630.002703
noncoding29550C29550TCT11B.1.2180.005155
noncoding29550C29550TCT11B.1.2340.000132
noncoding29550C29550TCT11B.1.36.10.00114
noncoding29550C29550TCT11B.1.36.180.00042
noncoding29550C29550TCT11B.1.3620.001541
noncoding29550C29550TCT11B.1.3690.000285
noncoding29550C29550TCT11B.1.3710.001122
noncoding29550C29550TCT11B.1.3960.000706
noncoding29550C29550TCT11B.1.4040.001302
noncoding29550C29550TCT11B.1.4160.001269
noncoding29550C29550TCT11B.1.5200.021739
noncoding29550C29550TCT11B.1.5620.018519
noncoding29550C29550TCT11B.1.5730.006098
noncoding29550C29550TCT11B.1.6100.003546
noncoding29550C29550TCT11C.370.000116
noncoding29550C29550TCT11P.1.150.000232
noncoding29550C29550TCT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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